Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

45398118 .. 45398863

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAATCCGCAAAGGTCACCAGAGGCGCCGGGGGACGAAAGGGCGGCGACCGCAAGAAGTCGGTCTCCAAGTCCGTCAAGGCCGGCCTCCAATTCCCCGTCGGCCGTATCGCCCGGTTCTTGAAAAAGGGCCGCTACGCCCAGCGAACCGGGTCCGGCGCCCCGATCTACCTCGCCGCCGTGCTCGAATACCTCGCCGCTGAGGTGCTGGAGCTTGCCGGAAACGCGGCACGTGACAACAAGAAGACTAGGATCAACCCGAGGCACGTGCAATTGGCGGTGAGGAACGACGAGGAGTTGGGGAAGCTTTTGGCCGGAGTGACCATCGCCAGCGGCGGAGTGCTTCCGAACATTAACCCGGTCTTGCTTCCCAAGAAGACCTCAAGCTCTGATGCCTCTGATAAGGCGACCAAGTCACCCAAATCTCTCAAGAAGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

147

Amino Acids

15.48

Weight (kDa)

10.58

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	18 - 95	1.2e-13	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	98 - 130	1.8e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	26, 158
AccII	CGCG	1 cut(s)	227
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	2 cut(s)	103, 312
AcvI	CACGTG	2 cut(s)	233, 268
AcyI	GRCGYC	2 cut(s)	27, 159
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	3 cut(s)	214, 307, 387
AluI	AGCT	3 cut(s)	214, 307, 387
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	5 cut(s)	81, 85, 103, 130, 312
ApeKI	GCWGC	1 cut(s)	437
AspLEI	GCGC	2 cut(s)	29, 161
AspS9I	GGNCC	2 cut(s)	130, 153
AsuC2I	CCSGG	4 cut(s)	31, 115, 151, 359
AsuHPI	GGTGA	3 cut(s)	10, 292, 408
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	153
BanI	GGYRCC	2 cut(s)	26, 158
BbrPI	CACGTG	2 cut(s)	233, 268
BbsI	GAAGAC	2 cut(s)	251, 383
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	2 cut(s)	90, 164
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcnI	CCSGG	4 cut(s)	31, 115, 151, 359
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	2 cut(s)	30, 162
BisI	GCNGC	7 cut(s)	46, 133, 177, 198, 228, 334, 438
BlsI	GCNGC	7 cut(s)	47, 134, 178, 199, 229, 335, 439
Bme1390I	CCNGG	4 cut(s)	31, 115, 151, 359
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	130, 153
BmiI	GGNNCC	3 cut(s)	28, 154, 160
BmrFI	CCNGG	4 cut(s)	31, 115, 151, 359
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	2 cut(s)	251, 383
BpmI	CTGGAG	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	367, 413
BpuMI	CCSGG	4 cut(s)	31, 115, 151, 359
BsaAI	YACGTR	2 cut(s)	233, 268
BsaHI	GRCGYC	2 cut(s)	27, 159
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	30, 260
Bse118I	RCCGGY	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	30, 260
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	308
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	424
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	2 cut(s)	52, 106
BshFI	GGCC	5 cut(s)	83, 87, 105, 132, 314
BshNI	GGYRCC	2 cut(s)	26, 158
BsiEI	CGRYCG	2 cut(s)	52, 106
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	8 cut(s)	30, 84, 115, 150, 156, 219, 315, 359
BslFI	GGGAC	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	5 cut(s)	83, 87, 105, 132, 314
Bso31I	GGTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	165, 252
BspANI	GGCC	5 cut(s)	83, 87, 105, 132, 314
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	3 cut(s)	28, 154, 160
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	26, 158
BspTNI	GGTCTC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	30, 260
BssMI	GATC	2 cut(s)	165, 252
BssNI	GRCGYC	2 cut(s)	27, 159
BstACI	GRCGYC	2 cut(s)	27, 159
BstBAI	YACGTR	2 cut(s)	233, 268
BstC8I	GCNNGC	3 cut(s)	85, 216, 331
BstDEI	CTNAG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	2 cut(s)	30, 162
BstHHI	GCGC	2 cut(s)	29, 161
BstKTI	GATC	2 cut(s)	168, 255
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	165, 252
BstMCI	CGRYCG	2 cut(s)	52, 106
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 224
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	4 cut(s)	29, 113, 149, 357
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	2 cut(s)	251, 383
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	83, 87, 105, 132, 314
BtgZI	GCGATG	1 cut(s)	310
Cac8I	GCNNGC	3 cut(s)	85, 216, 331
CfoI	GCGC	2 cut(s)	29, 161
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	130, 153
CviJI	RGCY	9 cut(s)	83, 87, 105, 132, 214, 307, 314, 387, 437
CviKI_1	RGCY	9 cut(s)	83, 87, 105, 132, 214, 307, 314, 387, 437
DdeI	CTNAG	1 cut(s)	201
DinI	GGCGCC	2 cut(s)	28, 160
DpnI	GATC	2 cut(s)	167, 254
DpnII	GATC	2 cut(s)	165, 252
EaeI	YGGCCR	2 cut(s)	103, 312
EagI	CGGCCG	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	103
Eco72I	CACGTG	2 cut(s)	233, 268
Eco88I	CYCGRG	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EgeI	GGCGCC	2 cut(s)	28, 160
EheI	GGCGCC	2 cut(s)	28, 160
FaqI	GGGAC	1 cut(s)	48
Fnu4HI	GCNGC	7 cut(s)	46, 133, 177, 198, 228, 334, 438
FseI	GGCCGGCC	1 cut(s)	87
Fsp4HI	GCNGC	7 cut(s)	46, 133, 177, 198, 228, 334, 438
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	2 cut(s)	28, 160
GluI	GCNGC	7 cut(s)	46, 133, 177, 198, 228, 334, 438
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	2 cut(s)	30, 162
HaeIII	GGCC	5 cut(s)	83, 87, 105, 132, 314
HapII	CCGG	8 cut(s)	30, 84, 115, 150, 156, 219, 315, 359
HhaI	GCGC	2 cut(s)	29, 161
Hin1I	GRCGYC	2 cut(s)	27, 159
Hin6I	GCGC	2 cut(s)	27, 159
HinP1I	GCGC	2 cut(s)	27, 159
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	8 cut(s)	30, 84, 115, 150, 156, 219, 315, 359
HphI	GGTGA	3 cut(s)	10, 292, 408
Hpy188I	TCNGA	3 cut(s)	348, 391, 400
Hpy188III	TCNNGA	2 cut(s)	121, 430
Hpy99I	CGWCG	2 cut(s)	104, 293
HpyAV	CCTTC	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	232, 267
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 224
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	2 cut(s)	232, 267
Hsp92I	GRCGYC	2 cut(s)	27, 159
HspAI	GCGC	2 cut(s)	27, 159
KasI	GGCGCC	2 cut(s)	26, 158
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	165, 252
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	232, 267
MaeIII	GTNAC	4 cut(s)	16, 233, 319, 414
MalI	GATC	2 cut(s)	167, 254
MboI	GATC	2 cut(s)	165, 252
MboII	GAAGA	2 cut(s)	256, 388
MfeI	CAATTG	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	92, 272
Mly113I	GGCGCC	2 cut(s)	27, 159
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	2 cut(s)	354, 442
MspA1I	CMGCKG	2 cut(s)	200, 333
MspI	CCGG	8 cut(s)	30, 84, 115, 150, 156, 219, 315, 359
MspR9I	CCNGG	4 cut(s)	31, 115, 151, 359
MunI	CAATTG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	51, 224
NaeI	GCCGGC	1 cut(s)	85
NarI	GGCGCC	2 cut(s)	27, 159
NciI	CCSGG	4 cut(s)	31, 115, 151, 359
NdeII	GATC	2 cut(s)	165, 252
NgoMIV	GCCGGC	1 cut(s)	83
NlaIV	GGNNCC	3 cut(s)	28, 154, 160
NmuCI	GTSAC	4 cut(s)	16, 233, 319, 414
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	5
PflFI	GACNNNGTC	1 cut(s)	412
PkrI	GCNGC	7 cut(s)	47, 134, 178, 199, 229, 335, 439
PluTI	GGCGCC	2 cut(s)	30, 162
PmaCI	CACGTG	2 cut(s)	233, 268
PmlI	CACGTG	2 cut(s)	233, 268
Ppu21I	YACGTR	2 cut(s)	233, 268
PspCI	CACGTG	2 cut(s)	233, 268
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	28, 154, 160
PspPI	GGNCC	2 cut(s)	130, 153
PsyI	GACNNNGTC	1 cut(s)	412
RigI	GGCCGGCC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	354, 442
SatI	GCNGC	7 cut(s)	46, 133, 177, 198, 228, 334, 438
Sau3AI	GATC	2 cut(s)	165, 252
Sau96I	GGNCC	2 cut(s)	130, 153
ScrFI	CCNGG	4 cut(s)	31, 115, 151, 359
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	382
SfoI	GGCGCC	2 cut(s)	28, 160
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	382, 428
SmoI	CTYRAG	2 cut(s)	382, 428
Sse9I	AATT	2 cut(s)	92, 272
SspDI	GGCGCC	2 cut(s)	26, 158
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	4 cut(s)	29, 113, 149, 357
TaiI	ACGT	2 cut(s)	235, 270
TaqI	TCGA	1 cut(s)	186
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	92, 272
TauI	GCSGC	6 cut(s)	48, 135, 179, 200, 230, 336
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	354, 442
Tru9I	TTAA	2 cut(s)	354, 442
TseFI	GTSAC	4 cut(s)	16, 233, 319, 414
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	4 cut(s)	16, 233, 319, 414
TspGWI	ACGGA	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	153
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.