Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

29379905 .. 29380830

Gene Structure 926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1215400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAACCACGAAAGTCACCAAGGGCGCCGGCGGAAGAAGAGGCGGAGAGAGGAAGAAGTCGGTGTCTAAGTCAGTAAAAGCCGGCCTGCAATTCCCCGTCGGTCGTATTGCCCGTTTCCTCAAAAAGGGCCGCTACGCCCAGCGCACCGGTACCGGCGCTCCCATTTACCTCGCCGCCGTCCTCGAATACCTCGCAGCCGAGGTGCTGGAATTGGCGGGAAACGCGGCACGTGACAACAAAAAGACTCGGATCAACCCGAGGCACGTGCTCTTGGCCGTGAGAAACGACGAGGAGCTTGGAAAGCTCCTTGCCGGAGTGACCATCGCAAGCGGCGGCGTGCTCCCCAACATCAACCCAGTCTTGCTTCCGAAGAAAACCGGCTCCCAGGAAGGCGAGAAGGCGCCCAAATCTCCCAAGGCAGCAAAGTCGCCCAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

149

Amino Acids

15.65

Weight (kDa)

10.6

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	17 - 95	3.2e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	98 - 129	3.9e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	3 cut(s)	26, 152, 403
AccII	CGCG	1 cut(s)	227
AciI	CCGC	8 cut(s)	33, 45, 133, 177, 218, 227, 333, 336
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	276
AcvI	CACGTG	2 cut(s)	233, 268
AcyI	GRCGYC	2 cut(s)	27, 404
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	2 cut(s)	298, 307
AluI	AGCT	2 cut(s)	298, 307
Alw21I	GWGCWC	2 cut(s)	273, 345
AlwI	GGATC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	3 cut(s)	85, 130, 276
ApeKI	GCWGC	2 cut(s)	197, 422
AsiGI	ACCGGT	1 cut(s)	149
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	4 cut(s)	29, 147, 161, 406
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	259
BanI	GGYRCC	3 cut(s)	26, 152, 403
BbrPI	CACGTG	2 cut(s)	233, 268
Bbv12I	GWGCWC	2 cut(s)	273, 345
BbvI	GCAGC	2 cut(s)	209, 434
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	2 cut(s)	164, 263
BcgI	CGANNNNNNTGC	4 cut(s)	250, 284, 411, 445
BciT130I	CCWGG	1 cut(s)	389
BfoI	RGCGCY	3 cut(s)	30, 162, 407
BisI	GCNGC	7 cut(s)	133, 177, 198, 228, 334, 337, 423
BlsI	GCNGC	7 cut(s)	134, 178, 199, 229, 335, 338, 424
Bme1390I	CCNGG	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	4 cut(s)	28, 154, 385, 405
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	353
BsaAI	YACGTR	2 cut(s)	233, 268
BsaHI	GRCGYC	2 cut(s)	27, 404
BsaJI	CCNNGG	5 cut(s)	21, 201, 260, 387, 417
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	5 cut(s)	29, 83, 149, 155, 380
Bse1I	ACTGG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	5 cut(s)	21, 201, 260, 387, 417
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	209, 434
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	87, 132, 278
BshNI	GGYRCC	3 cut(s)	26, 152, 403
BshTI	ACCGGT	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	273, 345
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	6 cut(s)	30, 84, 150, 156, 315, 381
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	3 cut(s)	87, 132, 278
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	273, 345
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	8 cut(s)	33, 45, 133, 177, 218, 227, 333, 336
BspANI	GGCC	3 cut(s)	87, 132, 278
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	4 cut(s)	28, 154, 385, 405
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	3 cut(s)	26, 152, 403
BsrFI	RCCGGY	5 cut(s)	29, 83, 149, 155, 380
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	5 cut(s)	29, 83, 149, 155, 380
BssECI	CCNNGG	5 cut(s)	21, 201, 260, 387, 417
BssMI	GATC	1 cut(s)	252
BssNI	GRCGYC	2 cut(s)	27, 404
BssT1I	CCWWGG	2 cut(s)	21, 417
Bst2UI	CCWGG	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	2 cut(s)	27, 404
BstBAI	YACGTR	2 cut(s)	233, 268
BstC8I	GCNNGC	5 cut(s)	31, 85, 89, 331, 341
BstDEI	CTNAG	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	3 cut(s)	30, 162, 407
BstHHI	GCGC	4 cut(s)	29, 147, 161, 406
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 304
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	209, 434
BsuRI	GGCC	3 cut(s)	87, 132, 278
BtgZI	GCGATG	1 cut(s)	310
Cac8I	GCNNGC	5 cut(s)	31, 85, 89, 331, 341
CfoI	GCGC	4 cut(s)	29, 147, 161, 406
Cfr10I	RCCGGY	5 cut(s)	29, 83, 149, 155, 380
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	149
CviJI	RGCY	8 cut(s)	83, 87, 132, 200, 278, 298, 307, 384
CviKI_1	RGCY	8 cut(s)	83, 87, 132, 200, 278, 298, 307, 384
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	69
DinI	GGCGCC	2 cut(s)	28, 405
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
EciI	GGCGGA	2 cut(s)	48, 60
Eco130I	CCWWGG	2 cut(s)	21, 417
Eco72I	CACGTG	2 cut(s)	233, 268
Eco88I	CYCGRG	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	2 cut(s)	21, 417
EgeI	GGCGCC	2 cut(s)	28, 405
EheI	GGCGCC	2 cut(s)	28, 405
ErhI	CCWWGG	2 cut(s)	21, 417
FaiI	YATR	1 cut(s)	445
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	7 cut(s)	133, 177, 198, 228, 334, 337, 423
Fsp4HI	GCNGC	7 cut(s)	133, 177, 198, 228, 334, 337, 423
GlaI	GCGC	4 cut(s)	28, 146, 160, 405
GluI	GCNGC	7 cut(s)	133, 177, 198, 228, 334, 337, 423
GsaI	CCCAGC	1 cut(s)	145
HaeII	RGCGCY	3 cut(s)	30, 162, 407
HaeIII	GGCC	3 cut(s)	87, 132, 278
HapII	CCGG	6 cut(s)	30, 84, 150, 156, 315, 381
HhaI	GCGC	4 cut(s)	29, 147, 161, 406
Hin1I	GRCGYC	2 cut(s)	27, 404
Hin6I	GCGC	4 cut(s)	27, 145, 159, 404
HinP1I	GCGC	4 cut(s)	27, 145, 159, 404
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	6 cut(s)	30, 84, 150, 156, 315, 381
HphI	GGTGA	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	252, 372
Hpy99I	CGWCG	2 cut(s)	104, 293
HpyAV	CCTTC	3 cut(s)	386, 394, 433
HpyCH4IV	ACGT	2 cut(s)	232, 267
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 304
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	232, 267
Hsp92I	GRCGYC	2 cut(s)	27, 404
HspAI	GCGC	4 cut(s)	27, 145, 159, 404
KasI	GGCGCC	2 cut(s)	26, 403
KpnI	GGTACC	1 cut(s)	156
KroI	GCCGGC	2 cut(s)	29, 83
KroNI	GCCGGC	2 cut(s)	31, 85
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	5 cut(s)	166, 295, 312, 348, 389
Lsp1109I	GCAGC	2 cut(s)	209, 434
MaeII	ACGT	2 cut(s)	232, 267
MaeIII	GTNAC	3 cut(s)	16, 233, 319
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	4 cut(s)	48, 51, 67, 385
MhlI	GDGCHC	2 cut(s)	273, 345
MluCI	AATT	2 cut(s)	92, 212
Mly113I	GGCGCC	2 cut(s)	27, 404
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	9 cut(s)	35, 45, 131, 182, 194, 196, 203, 255, 286
MreI	CGCCGGCG	1 cut(s)	29
MroNI	GCCGGC	2 cut(s)	29, 83
MspI	CCGG	6 cut(s)	30, 84, 150, 156, 315, 381
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	224, 304
NaeI	GCCGGC	2 cut(s)	31, 85
NarI	GGCGCC	2 cut(s)	27, 404
NdeII	GATC	1 cut(s)	252
NgoMIV	GCCGGC	2 cut(s)	29, 83
NlaIV	GGNNCC	4 cut(s)	28, 154, 385, 405
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	3 cut(s)	16, 233, 319
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PdiI	GCCGGC	2 cut(s)	31, 85
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	7 cut(s)	134, 178, 199, 229, 335, 338, 424
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	2 cut(s)	30, 407
PmaCI	CACGTG	2 cut(s)	233, 268
PmlI	CACGTG	2 cut(s)	233, 268
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	2 cut(s)	233, 268
Psp6I	CCWGG	1 cut(s)	387
PspCI	CACGTG	2 cut(s)	233, 268
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	28, 154, 385, 405
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SatI	GCNGC	7 cut(s)	133, 177, 198, 228, 334, 337, 423
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	273, 345
SetI	ASST	7 cut(s)	174, 195, 207, 235, 270, 300, 309
SfoI	GGCGCC	2 cut(s)	28, 405
SgrAI	CRCCGGYG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	92, 212
SsiI	CCGC	8 cut(s)	33, 45, 133, 177, 218, 227, 333, 336
SspDI	GGCGCC	2 cut(s)	26, 403
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	2 cut(s)	21, 417
TaiI	ACGT	2 cut(s)	235, 270
TaqI	TCGA	1 cut(s)	186
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	92, 212
TauI	GCSGC	5 cut(s)	135, 179, 230, 336, 339
TseFI	GTSAC	3 cut(s)	16, 233, 319
TseI	GCWGC	2 cut(s)	197, 422
Tsp45I	GTSAC	3 cut(s)	16, 233, 319
XagI	CCTNNNNNAGG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.