Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

28808943 .. 28809902

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1201800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAGCCACGAAAGCCACCAAGGGCGTCGGCGGAAGAAGAGGCGGAGAGAGGAAGAAGTCGGTGTCCAAGTCAGTTAAAGCCGGCCTCCAATTCCCCGTCGGCCGTATCGCTCGTTTCCTCAAAAAGGGACGCTACGCCCAGCGTACAGGTACCGGCGCTCCCATTTACCTCGCCGCCGTCCTCGAATACCTCGCCGCCGAGGTGCTGGAATTGGCGGGAAACGCGGCGCGTGACAACAAGAAGACTCGGATCAACCCGAGGCACTTGCTTTTGGCGGTGAGAAACGACGAGGAGCTGGGGAAGCTCCTCGCCGGCGTGACCATCGCAAGCGGCGGCGTGCTCCCCAACATCAATCCAGTCTTGCTTCCGAAGAAGACCTCTGGCTCCCAAGAAGGCGAGAAGGCGCCCAAGTCTCCCAAGGCAGCAAAGTCCCCAAAGAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

150

Amino Acids

15.72

Weight (kDa)

10.6

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	17 - 95	5e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	98 - 130	1.9e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	2 cut(s)	152, 406
AccII	CGCG	2 cut(s)	227, 232
AciI	CCGC	9 cut(s)	33, 45, 177, 198, 218, 227, 278, 333, 336
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	103
AcyI	GRCGYC	2 cut(s)	27, 407
AfaI	GTAC	2 cut(s)	148, 154
AfiI	CCNNNNNNNGG	2 cut(s)	127, 442
AluBI	AGCT	2 cut(s)	298, 307
AluI	AGCT	2 cut(s)	298, 307
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	2 cut(s)	85, 103
ApeKI	GCWGC	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	161, 232, 409
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	152, 406
BbsI	GAAGAC	2 cut(s)	251, 383
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	2 cut(s)	90, 164
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcoDI	GTCTC	1 cut(s)	420
BfoI	RGCGCY	2 cut(s)	162, 410
BisI	GCNGC	6 cut(s)	177, 198, 228, 334, 337, 426
BlsI	GCNGC	6 cut(s)	178, 199, 229, 335, 338, 427
BmeT110I	CYCGRG	1 cut(s)	259
BmiI	GGNNCC	3 cut(s)	154, 388, 408
BpiI	GAAGAC	2 cut(s)	251, 383
BsaHI	GRCGYC	2 cut(s)	27, 407
BsaJI	CCNNGG	4 cut(s)	21, 201, 260, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 442
Bse118I	RCCGGY	3 cut(s)	83, 155, 314
Bse1I	ACTGG	1 cut(s)	359
BseDI	CCNNGG	4 cut(s)	21, 201, 260, 420
BseLI	CCNNNNNNNGG	2 cut(s)	127, 442
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	2 cut(s)	299, 308
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	2 cut(s)	141, 298
Bsh1236I	CGCG	2 cut(s)	227, 232
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	87, 105
BshNI	GGYRCC	2 cut(s)	152, 406
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	84, 156, 315
BslFI	GGGAC	2 cut(s)	144, 418
BslI	CCNNNNNNNGG	2 cut(s)	127, 442
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	2 cut(s)	144, 418
BsnI	GGCC	2 cut(s)	87, 105
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	9 cut(s)	33, 45, 177, 198, 218, 227, 278, 333, 336
BspANI	GGCC	2 cut(s)	87, 105
BspFNI	CGCG	2 cut(s)	227, 232
BspLI	GGNNCC	3 cut(s)	154, 388, 408
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	152, 406
BsrFI	RCCGGY	3 cut(s)	83, 155, 314
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	3 cut(s)	83, 155, 314
BssECI	CCNNGG	4 cut(s)	21, 201, 260, 420
BssMI	GATC	1 cut(s)	252
BssNI	GRCGYC	2 cut(s)	27, 407
BssT1I	CCWWGG	2 cut(s)	21, 420
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	2 cut(s)	27, 407
BstC8I	GCNNGC	4 cut(s)	85, 316, 331, 341
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstFNI	CGCG	2 cut(s)	227, 232
BstH2I	RGCGCY	2 cut(s)	162, 410
BstHHI	GCGC	3 cut(s)	161, 232, 409
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 224, 304
BstUI	CGCG	2 cut(s)	227, 232
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	2 cut(s)	251, 383
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	87, 105
BtgZI	GCGATG	1 cut(s)	310
Cac8I	GCNNGC	4 cut(s)	85, 316, 331, 341
CfoI	GCGC	3 cut(s)	161, 232, 409
Cfr10I	RCCGGY	3 cut(s)	83, 155, 314
CseI	GACGC	2 cut(s)	16, 141
Csp6I	GTAC	2 cut(s)	147, 153
CviJI	RGCY	9 cut(s)	8, 17, 83, 87, 105, 298, 307, 387, 446
CviKI_1	RGCY	9 cut(s)	8, 17, 83, 87, 105, 298, 307, 387, 446
CviQI	GTAC	2 cut(s)	147, 153
DinI	GGCGCC	1 cut(s)	408
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
EciI	GGCGGA	2 cut(s)	48, 60
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	21, 420
Eco52I	CGGCCG	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	21, 420
EgeI	GGCGCC	1 cut(s)	408
EheI	GGCGCC	1 cut(s)	408
ErhI	CCWWGG	2 cut(s)	21, 420
FaqI	GGGAC	2 cut(s)	144, 418
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	6 cut(s)	177, 198, 228, 334, 337, 426
Fsp4HI	GCNGC	6 cut(s)	177, 198, 228, 334, 337, 426
GlaI	GCGC	3 cut(s)	160, 231, 408
GluI	GCNGC	6 cut(s)	177, 198, 228, 334, 337, 426
GsaI	CCCAGC	2 cut(s)	145, 302
HaeII	RGCGCY	2 cut(s)	162, 410
HaeIII	GGCC	2 cut(s)	87, 105
HapII	CCGG	3 cut(s)	84, 156, 315
HgaI	GACGC	2 cut(s)	16, 141
HhaI	GCGC	3 cut(s)	161, 232, 409
Hin1I	GRCGYC	2 cut(s)	27, 407
Hin6I	GCGC	3 cut(s)	159, 230, 407
HinP1I	GCGC	3 cut(s)	159, 230, 407
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	3 cut(s)	84, 156, 315
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	252, 372
Hpy99I	CGWCG	3 cut(s)	32, 104, 293
HpyAV	CCTTC	3 cut(s)	389, 397, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 224, 304
Hsp92I	GRCGYC	2 cut(s)	27, 407
HspAI	GCGC	3 cut(s)	159, 230, 407
KasI	GGCGCC	1 cut(s)	406
KpnI	GGTACC	1 cut(s)	156
KroI	GCCGGC	2 cut(s)	83, 314
KroNI	GCCGGC	2 cut(s)	85, 316
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	5 cut(s)	166, 295, 312, 348, 392
LpnPI	CCDG	9 cut(s)	97, 135, 155, 169, 194, 284, 328, 369, 372
Lsp1109I	GCAGC	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	233, 319
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	6 cut(s)	48, 51, 67, 256, 385, 388
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	92, 212
Mly113I	GGCGCC	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	241
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	2 cut(s)	83, 314
MseI	TTAA	2 cut(s)	78, 448
MspI	CCGG	3 cut(s)	84, 156, 315
MvnI	CGCG	2 cut(s)	227, 232
MwoI	GCNNNNNNNGC	3 cut(s)	14, 224, 304
NaeI	GCCGGC	2 cut(s)	85, 316
NarI	GGCGCC	1 cut(s)	407
NdeII	GATC	1 cut(s)	252
NgoMIV	GCCGGC	2 cut(s)	83, 314
NlaIV	GGNNCC	3 cut(s)	154, 388, 408
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	233, 319
PdiI	GCCGGC	2 cut(s)	85, 316
PkrI	GCNGC	6 cut(s)	178, 199, 229, 335, 338, 427
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	241
PspFI	CCCAGC	2 cut(s)	141, 298
PspN4I	GGNNCC	3 cut(s)	154, 388, 408
RsaI	GTAC	2 cut(s)	148, 154
RsaNI	GTAC	2 cut(s)	147, 153
SaqAI	TTAA	2 cut(s)	78, 448
SatI	GCNGC	6 cut(s)	177, 198, 228, 334, 337, 426
Sau3AI	GATC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	7 cut(s)	154, 174, 195, 207, 300, 309, 383
SfoI	GGCGCC	1 cut(s)	408
SgrAI	CRCCGGYG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	92, 212
SsiI	CCGC	9 cut(s)	33, 45, 177, 198, 218, 227, 278, 333, 336
SspDI	GGCGCC	1 cut(s)	406
StyI	CCWWGG	2 cut(s)	21, 420
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	92, 212
TauI	GCSGC	5 cut(s)	179, 200, 230, 336, 339
Tru1I	TTAA	2 cut(s)	78, 448
Tru9I	TTAA	2 cut(s)	78, 448
TseFI	GTSAC	2 cut(s)	233, 319
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	2 cut(s)	233, 319
XagI	CCTNNNNNAGG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.