Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Reverse (-)

24115354 .. 24116220

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAATCCACCGGAAAAGTGAAGAAAGCTTTCGGAGGAAGAAAACCACCTGGTGCCCCAAAAACCAAATCGGTTTCGAAATCGATGAAAGCCGGTCTTCAATTCCCAGTGGGAAGAATCACTCGTTTCCTGAAGAAAGGACGATACGCTCAGAGACTTGGTGGTGGTGCTCCGGTTTACATGGCCGCCGTTCTTGAATACCTCGCCGCAGAAGTTCTGGAGCTTGCTGGTAACGCTGCGAGAGATAACAAGAAATCAAGGATAATTCCGAGGCATCTTCTTCTCGCGATAAGGAACGATGAAGAATTGGGGAAACTTCTGAGTGGTGTCACAATCGCTCACGGTGGTGTTTTGCCTAACATCAACTCTGTTCTATTGCCTAAGAAGTCTGCCACTAAACCAGCTGAAGAAAAGGCTACCAAATCACCAGTCAAGTCTCCAAAGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005721 GO:0005730 GO:0005911 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009506 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0098687 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

150

Amino Acids

15.97

Weight (kDa)

10.55

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	21 - 98	5.1e-13	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	101 - 133	3.6e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	287
AciI	CCGC	2 cut(s)	186, 207
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	152, 426
AdeI	CACNNNGTG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	101, 197
AjnI	CCWGG	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	29, 223, 404, 449
AluI	AGCT	4 cut(s)	29, 223, 404, 449
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	2 cut(s)	148, 441
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
Asp700I	GAANNNNTTC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	417
AsuII	TTCGAA	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	148, 441
BisI	GCNGC	3 cut(s)	186, 207, 237
BlsI	GCNGC	3 cut(s)	187, 208, 238
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	51
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	2 cut(s)	11, 172
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	107, 428
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	164, 311
BseNI	ACTGG	2 cut(s)	107, 428
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	3 cut(s)	12, 93, 173
BsmAI	GTCTC	2 cut(s)	148, 441
BsnI	GGCC	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	58, 172
Bsp68I	TCGCGA	1 cut(s)	287
BspACI	CCGC	2 cut(s)	186, 207
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	163, 312
BspDI	ATCGAT	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	107, 428
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	150, 320, 381
BstFNI	CGCG	1 cut(s)	287
BstMAI	GTCTC	2 cut(s)	148, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	114
BtuMI	TCGCGA	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	83
CsiI	ACCWGGT	1 cut(s)	49
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	7 cut(s)	29, 92, 185, 223, 404, 416, 449
CviKI_1	RGCY	7 cut(s)	29, 92, 185, 223, 404, 416, 449
DdeI	CTNAG	3 cut(s)	150, 320, 381
DraIII	CACNNNGTG	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	152, 426
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	184
FaiI	YATR	1 cut(s)	182
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	186, 207, 237
Fsp4HI	GCNGC	3 cut(s)	186, 207, 237
GluI	GCNGC	3 cut(s)	186, 207, 237
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	3 cut(s)	12, 93, 173
Hin1II	CATG	1 cut(s)	184
HindIII	AAGCTT	2 cut(s)	27, 447
HinfI	GANTC	2 cut(s)	5, 117
HpaII	CCGG	3 cut(s)	12, 93, 173
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	35, 153, 270, 321
Hpy188III	TCNNGA	4 cut(s)	130, 194, 218, 286
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	150, 320, 381
Hsp92II	CATG	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	175, 220
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	283
MabI	ACCWGGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	230, 328
MboII	GAAGA	9 cut(s)	34, 51, 89, 126, 145, 269, 272, 314, 419
MhlI	GDGCHC	2 cut(s)	58, 172
MluCI	AATT	3 cut(s)	101, 264, 305
MnlI	CCTC	3 cut(s)	29, 212, 264
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	451
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	12, 93, 173
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	328
NruI	TCGCGA	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	77
OliI	CACNNNNGTG	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	5, 117
PkrI	GCNGC	3 cut(s)	187, 208, 238
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	404
RruI	TCGCGA	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	3 cut(s)	186, 207, 237
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	58, 172
SetI	ASST	6 cut(s)	31, 52, 204, 225, 406, 451
SexAI	ACCWGGT	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	283
SfuI	TTCGAA	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	3 cut(s)	101, 264, 305
SsiI	CCGC	2 cut(s)	186, 207
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	77, 83
TasI	AATT	3 cut(s)	101, 264, 305
TauI	GCSGC	2 cut(s)	188, 209
TfiI	GAWTC	2 cut(s)	5, 117
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	101, 315
TspRI	CASTG	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.