Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

29381110 .. 29381879

Gene Structure 770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1215500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTCGCCGCGATCAGCGGAGGCTTCGGTGGCAGGAAAGGCGGAGGGAGGAAGAAGGTTACTAAATCGTCCAGGGCTGGCCTGCAATTTCCGGTGGGTCGGATCGGCCGTTTCCTAAAAGCCGGTCGCTACGCCCAGCGCATCGGCACCGGGGCTCCGATTTATCTGGCCGCTGTTCTTGAATACCTCGCTGCTGAGGTTCTGGAATTGGCTGGGAATGCGGCACGTGACAACAAGAAGAGTCGAATCACCCCGCGGCACGTGCAATTGGCCGTGAGGAACGACGAGGAGTTGGGAAAGCTTTTGAAAGGAGTGACCATCGCCAGCGGGGGTGTGCTTCCACATATAAACCCCGTTTTGCTTCCGAAGCCGGCCTTCAACGGTGGTGATGCCAAAAAGAAGGCTGCGAAGTCTCCCAAACCCGCCAAGACCGTCGCCGATATCCCTTCCGCTCCCGCCGCTGAATTTTCTCCAAACCCGCCTGCGGCGGCTGCCGATTCAGCTTCTGATGTTGCGGAAAATGTCCCCAATTCCCCCAATGCTTCGAGGAGCTCGTCGTCTGGTGTTTCTGGTTTATCAACAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

197

Amino Acids

19.96

Weight (kDa)

10.41

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	16 - 93	1.4e-13	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	96 - 123	3.6e-16	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	452
AccII	CGCG	2 cut(s)	11, 256
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	3 cut(s)	106, 168, 270
AcsI	RAATTY	1 cut(s)	464
AcvI	CACGTG	2 cut(s)	227, 262
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	182, 307, 379
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	301, 503, 552
AluI	AGCT	3 cut(s)	301, 503, 552
Alw21I	GWGCWC	1 cut(s)	554
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	5 cut(s)	79, 106, 168, 270, 372
ApeKI	GCWGC	3 cut(s)	191, 404, 491
ApoI	RAATTY	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	241, 398
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	157, 554
BbrPI	CACGTG	2 cut(s)	227, 262
Bbv12I	GWGCWC	1 cut(s)	554
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	178, 391, 478
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	2 cut(s)	93, 257
BciT130I	CCWGG	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	73, 151
BmiI	GGNNCC	2 cut(s)	148, 156
BmrFI	CCNGG	2 cut(s)	73, 151
BmsI	GCATC	2 cut(s)	150, 379
Bpu10I	CCTNAGC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	2 cut(s)	227, 262
BsaJI	CCNNGG	3 cut(s)	72, 150, 254
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse118I	RCCGGY	2 cut(s)	122, 370
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	72, 150, 254
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	302, 562
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	178, 391, 478
BseYI	CCCAGC	2 cut(s)	135, 212
Bsh1236I	CGCG	2 cut(s)	11, 256
Bsh1285I	CGRYCG	2 cut(s)	109, 127
BshFI	GGCC	5 cut(s)	81, 108, 170, 272, 374
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	2 cut(s)	109, 127
BsiHKAI	GWGCWC	1 cut(s)	554
BsiSI	CCGG	4 cut(s)	92, 123, 150, 371
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	5 cut(s)	81, 108, 170, 272, 374
Bsp1286I	GDGCHC	2 cut(s)	157, 554
Bsp143I	GATC	2 cut(s)	12, 102
BspANI	GGCC	5 cut(s)	81, 108, 170, 272, 374
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	2 cut(s)	11, 256
BspLI	GGNNCC	2 cut(s)	148, 156
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	122, 370
BssAI	RCCGGY	2 cut(s)	122, 370
BssECI	CCNNGG	3 cut(s)	72, 150, 254
BssMI	GATC	2 cut(s)	12, 102
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	383, 433
Bst6I	CTCTTC	1 cut(s)	233
BstBAI	YACGTR	2 cut(s)	227, 262
BstC8I	GCNNGC	5 cut(s)	79, 83, 325, 372, 483
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	11, 256
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	15, 105
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	12, 102
BstMCI	CGRYCG	2 cut(s)	109, 127
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 39, 218, 262, 367, 458, 491, 500
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	71, 149
BstUI	CGCG	2 cut(s)	11, 256
BstV1I	GCAGC	3 cut(s)	178, 391, 478
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	5 cut(s)	81, 108, 170, 272, 374
BtgI	CCRYGG	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	304
Cac8I	GCNNGC	5 cut(s)	79, 83, 325, 372, 483
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	2 cut(s)	122, 370
Cfr42I	CCGCGG	1 cut(s)	257
CviAII	CATG	1 cut(s)	588
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	14, 104
DpnII	GATC	2 cut(s)	12, 102
EaeI	YGGCCR	3 cut(s)	106, 168, 270
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	552
EclXI	CGGCCG	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	157, 554
Eco32I	GATATC	1 cut(s)	442
Eco52I	CGGCCG	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	552
Eco72I	CACGTG	2 cut(s)	227, 262
EcoICRI	GAGCTC	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	157, 554
FaeI	CATG	1 cut(s)	591
FaiI	YATR	3 cut(s)	345, 347, 589
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	1 cut(s)	587
FauI	CCCGC	5 cut(s)	261, 320, 430, 463, 486
FriOI	GRGCYC	2 cut(s)	157, 554
GlaI	GCGC	1 cut(s)	140
GsaI	CCCAGC	2 cut(s)	139, 216
HaeIII	GGCC	5 cut(s)	81, 108, 170, 272, 374
HapII	CCGG	4 cut(s)	92, 123, 150, 371
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	591
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	241, 246, 497
HpaII	CCGG	4 cut(s)	92, 123, 150, 371
HphI	GGTGA	2 cut(s)	241, 398
Hpy188I	TCNGA	4 cut(s)	102, 159, 366, 508
Hpy188III	TCNNGA	2 cut(s)	179, 203
Hpy99I	CGWCG	3 cut(s)	287, 437, 559
HpyAV	CCTTC	4 cut(s)	49, 385, 394, 456
HpyCH4III	ACNGT	2 cut(s)	383, 433
HpyCH4IV	ACGT	2 cut(s)	226, 261
HpyCH4V	TGCA	2 cut(s)	85, 265
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 39, 218, 262, 367, 458, 491, 500
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	2 cut(s)	226, 261
Hsp92II	CATG	1 cut(s)	591
HspAI	GCGC	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	12, 102
LmnI	GCTCC	3 cut(s)	160, 457, 549
Lsp1109I	GCAGC	3 cut(s)	178, 391, 478
LweI	GCATC	2 cut(s)	150, 379
MaeII	ACGT	2 cut(s)	226, 261
MaeIII	GTNAC	3 cut(s)	58, 227, 313
MalI	GATC	2 cut(s)	14, 104
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	2 cut(s)	12, 102
MboII	GAAGA	2 cut(s)	64, 250
MfeI	CAATTG	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	157, 554
MluCI	AATT	5 cut(s)	86, 206, 266, 464, 529
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	14, 38, 42, 190, 197, 270, 280, 540
MroNI	GCCGGC	1 cut(s)	370
MspA1I	CMGCKG	5 cut(s)	18, 173, 256, 327, 461
MspI	CCGG	4 cut(s)	92, 123, 150, 371
MspR9I	CCNGG	2 cut(s)	73, 151
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	2 cut(s)	11, 256
MwoI	GCNNNNNNNGC	8 cut(s)	30, 39, 218, 262, 367, 458, 491, 500
NaeI	GCCGGC	1 cut(s)	372
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	12, 102
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	591
NlaIV	GGNNCC	2 cut(s)	148, 156
NmuCI	GTSAC	2 cut(s)	227, 313
PcsI	WCGNNNNNNNCGW	2 cut(s)	106, 551
PctI	GAATGC	1 cut(s)	223
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	246, 497
PleI	GAGTC	1 cut(s)	249
PmaCI	CACGTG	2 cut(s)	227, 262
PmlI	CACGTG	2 cut(s)	227, 262
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	2 cut(s)	227, 262
Psp124BI	GAGCTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	71
PspCI	CACGTG	2 cut(s)	227, 262
PspFI	CCCAGC	2 cut(s)	135, 212
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	148, 156
PstNI	CAGNNNCTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	554
SacII	CCGCGG	1 cut(s)	257
Sau3AI	GATC	2 cut(s)	12, 102
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	73, 151
SduI	GDGCHC	2 cut(s)	157, 554
SetI	ASST	8 cut(s)	60, 189, 201, 229, 264, 303, 505, 554
SfaNI	GCATC	2 cut(s)	150, 379
Sfr303I	CCGCGG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	257
Sse9I	AATT	5 cut(s)	86, 206, 266, 464, 529
SstI	GAGCTC	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	71, 149
TaaI	ACNGT	2 cut(s)	383, 433
TaiI	ACGT	2 cut(s)	229, 264
TaqI	TCGA	2 cut(s)	244, 545
TasI	AATT	5 cut(s)	86, 206, 266, 464, 529
TauI	GCSGC	7 cut(s)	11, 173, 224, 259, 461, 488, 491
TfiI	GAWTC	2 cut(s)	246, 497
TseFI	GTSAC	2 cut(s)	227, 313
TseI	GCWGC	3 cut(s)	191, 404, 491
Tsp45I	GTSAC	2 cut(s)	227, 313
XapI	RAATTY	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.