Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

21759309 .. 21760142

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCAGTTCCTGACCAAATTCAAATCCAAGAGCGTCGAAACATCCACTTTCCCTCCTAAACGCATCGTTTTCGTTTCCCCAGAAAACTCAGAGAGAATGGAGACCACGAAAGTCACCAAGGGCGCCGGCGGAAGAAGAGGCGGAGAGAGGAAGAAGTCGGTGTCTAAGTCAGTAAAAGCCGGCCTCCAGTTCCCCGTCGGTCGTATCGCACGTTTCCTAAAAAAGGGCCGCTACGCCCAGCGCACCGGTACCGGCGCTCCCATTTACCTCGCCGCAGTCCTCGAATACCTCGCAGCCGAGGTGCTGGAGTTGGCGGGAAACGCGGCGCGTGACAACAAGAAGACGCGGATCAACCCGAGGCACGTGCTCCTGGCCGTGAGAAACGACGAGGAGCTTGGAAAGCTCCTCGCCGGAGTGACCATCGCAAGTGGCGGCGTGCTCCCGAACATCAACCCAGTCTTGCTTCCGAAGAAGACCTCCGGCTCCCAGGAAGGCGAGAAGGCGCCCAAATCTCCCAAGGCAGCAAAGTCGCCCAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

182

Amino Acids

19.47

Weight (kDa)

10.57

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	3 cut(s)	122, 248, 502
AccII	CGCG	3 cut(s)	323, 328, 346
AciI	CCGC	8 cut(s)	129, 141, 229, 273, 314, 323, 346, 432
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	17
AcvI	CACGTG	1 cut(s)	364
AcyI	GRCGYC	2 cut(s)	123, 503
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	369, 486
AluBI	AGCT	2 cut(s)	394, 403
AluI	AGCT	2 cut(s)	394, 403
Alw21I	GWGCWC	2 cut(s)	369, 441
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	3 cut(s)	181, 226, 372
ApeKI	GCWGC	2 cut(s)	293, 521
ApoI	RAATTY	1 cut(s)	17
AsiGI	ACCGGT	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	5 cut(s)	125, 243, 257, 328, 505
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	355
BanI	GGYRCC	3 cut(s)	122, 248, 502
BbrPI	CACGTG	1 cut(s)	364
BbsI	GAAGAC	2 cut(s)	347, 479
Bbv12I	GWGCWC	2 cut(s)	369, 441
BbvI	GCAGC	2 cut(s)	305, 533
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	359
BcgI	CGANNNNNNTGC	6 cut(s)	52, 86, 346, 380, 510, 544
BciT130I	CCWGG	2 cut(s)	371, 488
BcoDI	GTCTC	1 cut(s)	95
BfoI	RGCGCY	3 cut(s)	126, 258, 506
BisI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
BlsI	GCNGC	6 cut(s)	230, 274, 295, 325, 434, 523
Bme1390I	CCNGG	2 cut(s)	371, 488
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	4 cut(s)	124, 250, 484, 504
BmrFI	CCNGG	2 cut(s)	371, 488
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	449
BpiI	GAAGAC	2 cut(s)	347, 479
BpmI	CTGGAG	2 cut(s)	170, 326
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	2 cut(s)	123, 503
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	5 cut(s)	117, 297, 356, 486, 516
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	4 cut(s)	125, 179, 245, 251
Bse1I	ACTGG	2 cut(s)	187, 455
BseBI	CCWGG	2 cut(s)	371, 488
BseDI	CCNNGG	5 cut(s)	117, 297, 356, 486, 516
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	187, 455
BseRI	GAGGAG	2 cut(s)	395, 404
BseXI	GCAGC	2 cut(s)	305, 533
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	3 cut(s)	323, 328, 346
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	183, 228, 374
BshNI	GGYRCC	3 cut(s)	122, 248, 502
BshTI	ACCGGT	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	369, 441
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	183, 228, 374
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	369, 441
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	8 cut(s)	129, 141, 229, 273, 314, 323, 346, 432
BspANI	GGCC	3 cut(s)	183, 228, 374
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	3 cut(s)	323, 328, 346
BspLI	GGNNCC	4 cut(s)	124, 250, 484, 504
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	3 cut(s)	122, 248, 502
BspTNI	GGTCTC	1 cut(s)	95
BsrFI	RCCGGY	4 cut(s)	125, 179, 245, 251
BsrI	ACTGG	2 cut(s)	187, 455
BssAI	RCCGGY	4 cut(s)	125, 179, 245, 251
BssECI	CCNNGG	5 cut(s)	117, 297, 356, 486, 516
BssMI	GATC	1 cut(s)	348
BssNI	GRCGYC	2 cut(s)	123, 503
BssT1I	CCWWGG	2 cut(s)	117, 516
Bst2UI	CCWGG	2 cut(s)	371, 488
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	123, 503
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	3 cut(s)	127, 181, 437
BstDEI	CTNAG	2 cut(s)	88, 165
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	3 cut(s)	323, 328, 346
BstH2I	RGCGCY	3 cut(s)	126, 258, 506
BstHHI	GCGC	5 cut(s)	125, 243, 257, 328, 505
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	348
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 400
BstNI	CCWGG	2 cut(s)	371, 488
BstSCI	CCNGG	2 cut(s)	369, 486
BstUI	CGCG	3 cut(s)	323, 328, 346
BstV1I	GCAGC	2 cut(s)	305, 533
BstV2I	GAAGAC	2 cut(s)	347, 479
BsuRI	GGCC	3 cut(s)	183, 228, 374
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	127, 181, 437
CaiI	CAGNNNCTG	1 cut(s)	10
CfoI	GCGC	5 cut(s)	125, 243, 257, 328, 505
Cfr10I	RCCGGY	4 cut(s)	125, 179, 245, 251
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	2 cut(s)	22, 352
Csp6I	GTAC	1 cut(s)	249
CspAI	ACCGGT	1 cut(s)	245
CviJI	RGCY	8 cut(s)	179, 183, 228, 296, 374, 394, 403, 483
CviKI_1	RGCY	8 cut(s)	179, 183, 228, 296, 374, 394, 403, 483
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	88, 165
DinI	GGCGCC	2 cut(s)	124, 504
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	2 cut(s)	144, 156
Eco130I	CCWWGG	2 cut(s)	117, 516
Eco31I	GGTCTC	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	369, 486
EcoT14I	CCWWGG	2 cut(s)	117, 516
EgeI	GGCGCC	2 cut(s)	124, 504
EheI	GGCGCC	2 cut(s)	124, 504
ErhI	CCWWGG	2 cut(s)	117, 516
FaiI	YATR	1 cut(s)	544
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
GlaI	GCGC	5 cut(s)	124, 242, 256, 327, 504
GluI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	2 cut(s)	170, 326
HaeII	RGCGCY	3 cut(s)	126, 258, 506
HaeIII	GGCC	3 cut(s)	183, 228, 374
HapII	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
HgaI	GACGC	2 cut(s)	22, 352
HhaI	GCGC	5 cut(s)	125, 243, 257, 328, 505
Hin1I	GRCGYC	2 cut(s)	123, 503
Hin6I	GCGC	5 cut(s)	123, 241, 255, 326, 503
HinP1I	GCGC	5 cut(s)	123, 241, 255, 326, 503
HpaII	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	91, 468
Hpy188III	TCNNGA	2 cut(s)	10, 442
Hpy99I	CGWCG	3 cut(s)	38, 200, 389
HpyAV	CCTTC	3 cut(s)	485, 493, 532
HpyCH4IV	ACGT	2 cut(s)	211, 363
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 400
HpyF3I	CTNAG	2 cut(s)	88, 165
HpySE526I	ACGT	2 cut(s)	211, 363
Hsp92I	GRCGYC	2 cut(s)	123, 503
HspAI	GCGC	5 cut(s)	123, 241, 255, 326, 503
KasI	GGCGCC	2 cut(s)	122, 502
KpnI	GGTACC	1 cut(s)	252
KroI	GCCGGC	2 cut(s)	125, 179
KroNI	GCCGGC	2 cut(s)	127, 181
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	6 cut(s)	262, 372, 391, 408, 444, 488
Lsp1109I	GCAGC	2 cut(s)	305, 533
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	2 cut(s)	211, 363
MaeIII	GTNAC	3 cut(s)	112, 329, 415
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	6 cut(s)	144, 147, 163, 352, 481, 484
MhlI	GDGCHC	2 cut(s)	369, 441
MluCI	AATT	1 cut(s)	17
Mly113I	GGCGCC	2 cut(s)	123, 503
MreI	CGCCGGCG	1 cut(s)	125
MroNI	GCCGGC	2 cut(s)	125, 179
MspI	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
MspR9I	CCNGG	2 cut(s)	371, 488
MvaI	CCWGG	2 cut(s)	371, 488
MvnI	CGCG	3 cut(s)	323, 328, 346
MwoI	GCNNNNNNNGC	2 cut(s)	320, 400
NaeI	GCCGGC	2 cut(s)	127, 181
NarI	GGCGCC	2 cut(s)	123, 503
NdeII	GATC	1 cut(s)	348
NgoMIV	GCCGGC	2 cut(s)	125, 179
NlaIV	GGNNCC	4 cut(s)	124, 250, 484, 504
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	112, 329, 415
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PdiI	GCCGGC	2 cut(s)	127, 181
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	230, 274, 295, 325, 434, 523
PluTI	GGCGCC	2 cut(s)	126, 506
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	369, 486
PspCI	CACGTG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	369, 486
PspN4I	GGNNCC	4 cut(s)	124, 250, 484, 504
PspPI	GGNCC	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SatI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	371, 488
SduI	GDGCHC	2 cut(s)	369, 441
SetI	ASST	8 cut(s)	214, 270, 291, 303, 366, 396, 405, 479
SfaNI	GCATC	1 cut(s)	72
SfoI	GGCGCC	2 cut(s)	124, 504
SgrAI	CRCCGGYG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	8 cut(s)	129, 141, 229, 273, 314, 323, 346, 432
SspDI	GGCGCC	2 cut(s)	122, 502
StyD4I	CCNGG	2 cut(s)	369, 486
StyI	CCWWGG	2 cut(s)	117, 516
TaiI	ACGT	2 cut(s)	214, 366
TaqI	TCGA	2 cut(s)	36, 282
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	17
TauI	GCSGC	4 cut(s)	231, 275, 326, 435
TseFI	GTSAC	3 cut(s)	112, 329, 415
TseI	GCWGC	2 cut(s)	293, 521
Tsp45I	GTSAC	3 cut(s)	112, 329, 415
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.