AT5G27760

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015905
Physical Location & Seq
Forward (+)
9830251 .. 9831872
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27760.2

Sequence Viewer

Length: 291 bp
ATGGCGGAACCAAAGACAAAAGTTGCAGAAATCAGGGAATGGATCATCGAACATAAGCTTCGTACCGTTGGTTGCTTATGGCTAAGTGGTATCTCTGGTTCAATTGCTTATAATTGGTCTAAACCTGCCATGAAAACCAGTGTCAGAATCATCCACGCTAGGTTGCATGCTCAGGCGCTGACATTAGCCGCTCTGGCTGGAGCAGCTGCAGTGGAGTACTATGATCACAAATCTGGAGCCACTGATCGAATCCCGAAATTTCTGAAGCCTGATAACTTAAATAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

96

Amino Acids

10.66

Weight (kDa)

9.56

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27760 AT5G27760
fragaria_vesca FvH4_7g25530
malus_domestica MD01G1162000.v1.1 MD07G1230200.v1.1
prunus_persica Prupe.2G260100_v2.0.a1
pyrus_communis pycom01g17750
rosa_chinensis RchiOBHm_Chr1g0371531
rosa_multiflora Rmu_sc0000809.1_g000015
rosa_rugosa Rorug01G0365100
rosa_samantha Rh1AG375000 Rh1BG338500 Rh1CG351800 Rh1DG369500
rosa_wichuraiana Rw1G032990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
Acc36I ACCTGC 1 cut(s) 133
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 2 cut(s) 5, 189
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 64, 218
AgsI TTSAA 1 cut(s) 102
AluBI AGCT 2 cut(s) 58, 206
AluI AGCT 2 cut(s) 58, 206
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 203, 206
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 193, 215
BclI TGATCA 1 cut(s) 223
BfaI CTAG 2 cut(s) 159, 289
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 3 cut(s) 189, 204, 207
BlsI GCNGC 3 cut(s) 190, 205, 208
BmcAI AGTACT 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 9, 238
BpmI CTGGAG 2 cut(s) 219, 255
Bpu10I CCTNAGC 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 193, 215
Bsp143I GATC 3 cut(s) 42, 223, 244
BspACI CCGC 2 cut(s) 5, 189
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 9, 238
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 138
BssMI GATC 3 cut(s) 42, 223, 244
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 83, 171
BstF5I GGATG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 3 cut(s) 45, 226, 247
BstMBI GATC 3 cut(s) 42, 223, 244
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNSI RCATGY 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 193, 215
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 145, 216, 240
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 63, 217
CviAII CATG 2 cut(s) 130, 167
CviJI RGCY 7 cut(s) 58, 82, 188, 197, 206, 239, 268
CviKI_1 RGCY 7 cut(s) 58, 82, 188, 197, 206, 239, 268
CviQI GTAC 2 cut(s) 63, 217
DdeI CTNAG 2 cut(s) 83, 171
DpnI GATC 3 cut(s) 44, 225, 246
DpnII GATC 3 cut(s) 42, 223, 244
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 284
FaeI CATG 2 cut(s) 133, 170
FaiI YATR 6 cut(s) 54, 79, 111, 131, 168, 222
FatI CATG 2 cut(s) 129, 166
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 189, 204, 207
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 189, 204, 207
FspBI CTAG 2 cut(s) 159, 289
GlaI GCGC 1 cut(s) 177
GluI GCNGC 3 cut(s) 189, 204, 207
GsuI CTGGAG 2 cut(s) 219, 255
HaeII RGCGCY 1 cut(s) 179
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 133, 170
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 147, 249
Hpy188I TCNGA 2 cut(s) 146, 264
Hpy188III TCNNGA 2 cut(s) 234, 253
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 26, 166, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 2 cut(s) 83, 171
Hsp92II CATG 2 cut(s) 133, 170
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 42, 223, 244
LmnI GCTCC 2 cut(s) 200, 236
LpnPI CCDG 9 cut(s) 19, 81, 138, 151, 158, 179, 183, 219, 282
Lsp1109I GCAGC 2 cut(s) 193, 215
MaeI CTAG 2 cut(s) 159, 289
MalI GATC 3 cut(s) 44, 225, 246
MbiI CCGCTC 1 cut(s) 191
MboI GATC 3 cut(s) 42, 223, 244
MfeI CAATTG 1 cut(s) 102
MluCI AATT 3 cut(s) 102, 112, 257
MseI TTAA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 206
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NdeII GATC 3 cut(s) 42, 223, 244
NlaIII CATG 2 cut(s) 133, 170
NlaIV GGNNCC 2 cut(s) 9, 238
NspI RCATGY 1 cut(s) 170
PaeI GCATGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 147, 249
PkrI GCNGC 3 cut(s) 190, 205, 208
PsiI TTATAA 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 9, 238
PsrI GAACNNNNNNTAC 2 cut(s) 82, 114
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 64, 218
RsaNI GTAC 2 cut(s) 63, 217
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 189, 204, 207
Sau3AI GATC 3 cut(s) 42, 223, 244
ScaI AGTACT 1 cut(s) 218
SetI ASST 4 cut(s) 60, 127, 164, 208
SfcI CTRYAG 1 cut(s) 207
SphI GCATGC 1 cut(s) 170
Sse9I AATT 3 cut(s) 102, 112, 257
SsiI CCGC 2 cut(s) 5, 189
SspMI CTAG 2 cut(s) 159, 289
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 48, 247
TasI AATT 3 cut(s) 102, 112, 257
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 2 cut(s) 147, 249
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 3 cut(s) 145, 216, 247
TseI GCWGC 2 cut(s) 203, 206
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 3 cut(s) 145, 216, 247
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 170
XspI CTAG 2 cut(s) 159, 289
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.