MD01G1162000.v1.1

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0015905
Physical Location & Seq
Reverse (-)
26710113 .. 26711803
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1162000.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGAGGCAATTCAGTCCTGGGTTTCGGAACACAAGCTTACAAGCATTGGAGGAATATGGGCGTCAGCAGTTGGAGCATCTCTAGCCTATTCAAAAACAAGAACACCCCTCAAGCCAAGCCTGAGGCTTATACATGCTAGGATGCACGCACAGGCCTTGACCCTGGCTGTCCTATCTGGTGCAGCAGTCTACCATTACTATGAGGAGCATGAAGCAGCTGCCCGCCACCATGGAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

81

Amino Acids

8.75

Weight (kDa)

7.07

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 10 - 60 1.5e-10 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27760 AT5G27760
fragaria_vesca FvH4_7g25530
malus_domestica MD01G1162000.v1.1 MD07G1230200.v1.1
prunus_persica Prupe.2G260100_v2.0.a1
pyrus_communis pycom01g17750
rosa_chinensis RchiOBHm_Chr1g0371531
rosa_multiflora Rmu_sc0000809.1_g000015
rosa_rugosa Rorug01G0365100
rosa_samantha Rh1AG375000 Rh1BG338500 Rh1CG351800 Rh1DG369500
rosa_wichuraiana Rw1G032990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 62
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 2 cut(s) 17, 162
AluBI AGCT 2 cut(s) 37, 218
AluI AGCT 2 cut(s) 37, 218
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 182, 215, 218
AxyI CCTNAGG 1 cut(s) 122
BbvI GCAGC 3 cut(s) 194, 205, 227
BciT130I CCWGG 2 cut(s) 19, 164
BfaI CTAG 2 cut(s) 83, 138
BisI GCNGC 3 cut(s) 183, 216, 219
BlsI GCNGC 3 cut(s) 184, 217, 220
Bme1390I CCNGG 2 cut(s) 19, 164
BmrFI CCNGG 2 cut(s) 19, 164
BmsI GCATC 2 cut(s) 86, 132
BpuEI CTTGAG 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 18, 162, 229
Bse21I CCTNAGG 1 cut(s) 122
BseBI CCWGG 2 cut(s) 19, 164
BseDI CCNNGG 3 cut(s) 18, 162, 229
BseGI GGATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 194, 205, 227
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 155
BsnI GGCC 1 cut(s) 155
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 1 cut(s) 223
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 18, 162, 229
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 19, 164
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 147, 223
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 74, 83
BstNI CCWGG 2 cut(s) 19, 164
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 17, 162
BstV1I GCAGC 3 cut(s) 194, 205, 227
Bsu36I CCTNAGG 1 cut(s) 122
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 147, 223
CseI GACGC 1 cut(s) 51
CviAII CATG 3 cut(s) 134, 209, 230
CviJI RGCY 8 cut(s) 37, 86, 115, 120, 127, 155, 167, 218
CviKI_1 RGCY 8 cut(s) 37, 86, 115, 120, 127, 155, 167, 218
DdeI CTNAG 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 17, 162
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 137, 212, 233
FaiI YATR 6 cut(s) 58, 131, 135, 201, 210, 231
FatI CATG 3 cut(s) 133, 208, 229
FauI CCCGC 1 cut(s) 230
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 183, 216, 219
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 183, 216, 219
FspBI CTAG 2 cut(s) 83, 138
GluI GCNGC 3 cut(s) 183, 216, 219
HaeIII GGCC 1 cut(s) 155
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 137, 212, 233
HindIII AAGCTT 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 145, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 83
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 137, 212, 233
LmnI GCTCC 2 cut(s) 74, 205
LpnPI CCDG 7 cut(s) 4, 31, 134, 137, 149, 162, 176
Lsp1109I GCAGC 3 cut(s) 194, 205, 227
LweI GCATC 2 cut(s) 86, 132
MaeI CTAG 2 cut(s) 83, 138
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 4 cut(s) 44, 117, 119, 196
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 19, 164
MvaI CCWGG 2 cut(s) 19, 164
MwoI GCNNNNNNNGC 2 cut(s) 74, 83
NcoI CCATGG 1 cut(s) 229
NlaIII CATG 3 cut(s) 137, 212, 233
NspI RCATGY 1 cut(s) 137
PceI AGGCCT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 184, 217, 220
Psp6I CCWGG 2 cut(s) 17, 162
PspGI CCWGG 2 cut(s) 17, 162
PvuII CAGCTG 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 3 cut(s) 183, 216, 219
ScrFI CCNGG 2 cut(s) 19, 164
SetI ASST 2 cut(s) 39, 220
SfaNI GCATC 2 cut(s) 86, 132
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 9
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 223
SspMI CTAG 2 cut(s) 83, 138
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 17, 162
StyI CCWWGG 1 cut(s) 229
TasI AATT 1 cut(s) 9
TseI GCWGC 3 cut(s) 182, 215, 218
TspDTI ATGAA 1 cut(s) 225
XceI RCATGY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 2 cut(s) 83, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.