Hypoxia induced protein conserved region
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G27760 AT5G27760 |
| fragaria_vesca | FvH4_7g25530 |
| malus_domestica | MD01G1162000.v1.1 MD07G1230200.v1.1 |
| prunus_persica | Prupe.2G260100_v2.0.a1 |
| pyrus_communis | pycom01g17750 |
| rosa_chinensis | RchiOBHm_Chr1g0371531 |
| rosa_multiflora | Rmu_sc0000809.1_g000015 |
| rosa_rugosa | Rorug01G0365100 |
| rosa_samantha | Rh1AG375000 Rh1BG338500 Rh1CG351800 Rh1DG369500 |
| rosa_wichuraiana | Rw1G032990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 220 |
| AluBI | AGCT | 2 cut(s) | 37, 215 |
| AluI | AGCT | 2 cut(s) | 37, 215 |
| Alw21I | GWGCWC | 1 cut(s) | 33 |
| AoxI | GGCC | 1 cut(s) | 153 |
| ApeKI | GCWGC | 2 cut(s) | 182, 185 |
| AspLEI | GCGC | 1 cut(s) | 182 |
| AxyI | CCTNAGG | 1 cut(s) | 122 |
| Bbv12I | GWGCWC | 1 cut(s) | 33 |
| BbvI | GCAGC | 2 cut(s) | 194, 197 |
| BfaI | CTAG | 1 cut(s) | 138 |
| BisI | GCNGC | 2 cut(s) | 183, 186 |
| BlsI | GCNGC | 2 cut(s) | 184, 187 |
| BmsI | GCATC | 1 cut(s) | 86 |
| BpuEI | CTTGAG | 1 cut(s) | 95 |
| Bse1I | ACTGG | 1 cut(s) | 168 |
| Bse21I | CCTNAGG | 1 cut(s) | 122 |
| BseNI | ACTGG | 1 cut(s) | 168 |
| BseXI | GCAGC | 2 cut(s) | 194, 197 |
| BshFI | GGCC | 1 cut(s) | 155 |
| BsiHKAI | GWGCWC | 1 cut(s) | 33 |
| BsmI | GAATGC | 1 cut(s) | 147 |
| BsnI | GGCC | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 1 cut(s) | 33 |
| BspACI | CCGC | 1 cut(s) | 220 |
| BspANI | GGCC | 1 cut(s) | 155 |
| BsrI | ACTGG | 1 cut(s) | 168 |
| BstC8I | GCNNGC | 1 cut(s) | 147 |
| BstDEI | CTNAG | 1 cut(s) | 122 |
| BstHHI | GCGC | 1 cut(s) | 182 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 50, 83 |
| BstNSI | RCATGY | 2 cut(s) | 137, 149 |
| BstV1I | GCAGC | 2 cut(s) | 194, 197 |
| Bsu36I | CCTNAGG | 1 cut(s) | 122 |
| BsuRI | GGCC | 1 cut(s) | 155 |
| BtsIMutI | CAGTG | 1 cut(s) | 161 |
| Cac8I | GCNNGC | 1 cut(s) | 147 |
| CfoI | GCGC | 1 cut(s) | 182 |
| CviAII | CATG | 3 cut(s) | 134, 146, 209 |
| CviJI | RGCY | 9 cut(s) | 37, 44, 86, 115, 120, 127, 155, 188, 215 |
| CviKI_1 | RGCY | 9 cut(s) | 37, 44, 86, 115, 120, 127, 155, 188, 215 |
| DdeI | CTNAG | 1 cut(s) | 122 |
| Eco147I | AGGCCT | 1 cut(s) | 155 |
| Eco81I | CCTNAGG | 1 cut(s) | 122 |
| EcoT22I | ATGCAT | 1 cut(s) | 147 |
| FaeI | CATG | 3 cut(s) | 137, 149, 212 |
| FaiI | YATR | 7 cut(s) | 47, 58, 131, 135, 147, 201, 210 |
| FatI | CATG | 3 cut(s) | 133, 145, 208 |
| Fnu4HI | GCNGC | 2 cut(s) | 183, 186 |
| Fsp4HI | GCNGC | 2 cut(s) | 183, 186 |
| FspBI | CTAG | 1 cut(s) | 138 |
| GlaI | GCGC | 1 cut(s) | 181 |
| GluI | GCNGC | 2 cut(s) | 183, 186 |
| HaeIII | GGCC | 1 cut(s) | 155 |
| HhaI | GCGC | 1 cut(s) | 182 |
| Hin1II | CATG | 3 cut(s) | 137, 149, 212 |
| Hin6I | GCGC | 1 cut(s) | 180 |
| HinP1I | GCGC | 1 cut(s) | 180 |
| Hpy188III | TCNNGA | 1 cut(s) | 66 |
| HpyCH4V | TGCA | 3 cut(s) | 26, 145, 149 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 50, 83 |
| HpyF3I | CTNAG | 1 cut(s) | 122 |
| Hsp92II | CATG | 3 cut(s) | 137, 149, 212 |
| HspAI | GCGC | 1 cut(s) | 180 |
| LmnI | GCTCC | 2 cut(s) | 50, 74 |
| LpnPI | CCDG | 5 cut(s) | 51, 68, 137, 149, 162 |
| Lsp1109I | GCAGC | 2 cut(s) | 194, 197 |
| LweI | GCATC | 1 cut(s) | 86 |
| MaeI | CTAG | 1 cut(s) | 138 |
| MhlI | GDGCHC | 1 cut(s) | 33 |
| MluCI | AATT | 3 cut(s) | 9, 69, 232 |
| MnlI | CCTC | 1 cut(s) | 117 |
| Mph1103I | ATGCAT | 1 cut(s) | 147 |
| MseI | TTAA | 1 cut(s) | 235 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| Mva1269I | GAATGC | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 50, 83 |
| NlaIII | CATG | 3 cut(s) | 137, 149, 212 |
| NsiI | ATGCAT | 1 cut(s) | 147 |
| NspI | RCATGY | 2 cut(s) | 137, 149 |
| PaeI | GCATGC | 1 cut(s) | 149 |
| PceI | AGGCCT | 1 cut(s) | 155 |
| PctI | GAATGC | 1 cut(s) | 147 |
| PkrI | GCNGC | 2 cut(s) | 184, 187 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SaqAI | TTAA | 1 cut(s) | 235 |
| SatI | GCNGC | 2 cut(s) | 183, 186 |
| SduI | GDGCHC | 1 cut(s) | 33 |
| SetI | ASST | 3 cut(s) | 39, 109, 217 |
| SfaNI | GCATC | 1 cut(s) | 86 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| SphI | GCATGC | 1 cut(s) | 149 |
| Sse9I | AATT | 3 cut(s) | 9, 69, 232 |
| SseBI | AGGCCT | 1 cut(s) | 155 |
| SsiI | CCGC | 1 cut(s) | 220 |
| SspMI | CTAG | 1 cut(s) | 138 |
| StuI | AGGCCT | 1 cut(s) | 155 |
| TasI | AATT | 3 cut(s) | 9, 69, 232 |
| Tru1I | TTAA | 1 cut(s) | 235 |
| Tru9I | TTAA | 1 cut(s) | 235 |
| TscAI | CASTG | 1 cut(s) | 168 |
| TseI | GCWGC | 2 cut(s) | 182, 185 |
| TspDTI | ATGAA | 1 cut(s) | 225 |
| TspRI | CASTG | 1 cut(s) | 168 |
| XceI | RCATGY | 2 cut(s) | 137, 149 |
| XspI | CTAG | 1 cut(s) | 138 |
| Zsp2I | ATGCAT | 1 cut(s) | 147 |