FvH4_7g25530

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015905
Physical Location & Seq
Reverse (-)
19462172 .. 19463608
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25530.t1

Sequence Viewer

Length: 255 bp
ATGGAGTCGATTCAGTCTTGGGTTTCAAAGAACAAGCTGGCCAGCATTGGAGGACTATGGGCAACAGGAGTTGGCGCATCCCTTGCTTATTCAACTGCAAGGACTCCTCTCAAGACCAGCCTCAAGCTTATACATGCTAGGATGCACGCACAAGCCTTGACACTAGGTGTCCTATCCGCCGCGGCGGTCTTCCATTACTATGATCAGCAGCGTGCTGGTGAAGAAGCACACGGTGCTGCTGCTTCTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

85

Amino Acids

8.81

Weight (kDa)

9.6

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 10 - 60 2.2e-12 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27760 AT5G27760
fragaria_vesca FvH4_7g25530
malus_domestica MD01G1162000.v1.1 MD07G1230200.v1.1
prunus_persica Prupe.2G260100_v2.0.a1
pyrus_communis pycom01g17750
rosa_chinensis RchiOBHm_Chr1g0371531
rosa_multiflora Rmu_sc0000809.1_g000015
rosa_rugosa Rorug01G0365100
rosa_samantha Rh1AG375000 Rh1BG338500 Rh1CG351800 Rh1DG369500
rosa_wichuraiana Rw1G032990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 4 cut(s) 177, 180, 182, 185
AcoI YGGCCR 1 cut(s) 39
AdeI CACNNNGTG 2 cut(s) 167, 233
AgsI TTSAA 2 cut(s) 27, 93
AluBI AGCT 2 cut(s) 37, 127
AluI AGCT 2 cut(s) 37, 127
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 208, 236, 239
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 230
BalI TGGCCA 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 220, 223, 226
BclI TGATCA 1 cut(s) 202
BfaI CTAG 2 cut(s) 138, 164
BisI GCNGC 5 cut(s) 180, 183, 209, 237, 240
BlsI GCNGC 5 cut(s) 181, 184, 210, 238, 241
BmsI GCATC 2 cut(s) 86, 132
BpiI GAAGAC 1 cut(s) 181
BpuEI CTTGAG 2 cut(s) 95, 107
BsaJI CCNNGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 77, 147
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 220, 223, 226
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 41
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 4 cut(s) 177, 180, 182, 185
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 233
BstAPI GCANNNNNTGC 2 cut(s) 83, 233
BstC8I GCNNGC 4 cut(s) 39, 43, 147, 213
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 77, 147
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 83, 233, 245
BstNSI RCATGY 1 cut(s) 137
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 220, 223, 226
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 77, 147
Cac8I GCNNGC 4 cut(s) 39, 43, 147, 213
CfoI GCGC 1 cut(s) 77
Cfr42I CCGCGG 1 cut(s) 183
CviAII CATG 1 cut(s) 134
CviJI RGCY 5 cut(s) 37, 41, 120, 127, 155
CviKI_1 RGCY 5 cut(s) 37, 41, 120, 127, 155
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DraIII CACNNNGTG 2 cut(s) 167, 233
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 166
FaeI CATG 1 cut(s) 137
FaiI YATR 4 cut(s) 58, 131, 135, 201
FatI CATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 5 cut(s) 180, 183, 209, 237, 240
FokI GGATG 2 cut(s) 64, 154
Fsp4HI GCNGC 5 cut(s) 180, 183, 209, 237, 240
FspBI CTAG 2 cut(s) 138, 164
GlaI GCGC 1 cut(s) 76
GluI GCNGC 5 cut(s) 180, 183, 209, 237, 240
HaeIII GGCC 1 cut(s) 41
HhaI GCGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 5, 10, 103
HphI GGTGA 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 98, 145, 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 233, 245
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 202
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 23, 51, 55, 130, 201
Lsp1109I GCAGC 3 cut(s) 220, 223, 226
LweI GCATC 2 cut(s) 86, 132
MaeI CTAG 2 cut(s) 138, 164
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 181, 233
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 2 cut(s) 14, 97
MnlI CCTC 3 cut(s) 44, 117, 131
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 182
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 83, 233, 245
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 137
NspI RCATGY 1 cut(s) 137
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 5 cut(s) 181, 184, 210, 238, 241
PleI GAGTC 2 cut(s) 13, 97
PpsI GAGTC 2 cut(s) 13, 97
RseI CAYNNNNRTG 1 cut(s) 198
SacII CCGCGG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 253
SatI GCNGC 5 cut(s) 180, 183, 209, 237, 240
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 2 cut(s) 14, 97
SetI ASST 3 cut(s) 39, 129, 169
SfaNI GCATC 2 cut(s) 86, 132
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 110, 122
SmoI CTYRAG 2 cut(s) 110, 122
Sse9I AATT 1 cut(s) 250
SsiI CCGC 4 cut(s) 177, 180, 182, 185
SspMI CTAG 2 cut(s) 138, 164
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 250
TauI GCSGC 2 cut(s) 182, 185
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TseI GCWGC 3 cut(s) 208, 236, 239
XceI RCATGY 1 cut(s) 137
XspI CTAG 2 cut(s) 138, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.