pycom01g17750

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015905
Physical Location & Seq
Reverse (-)
16921785 .. 16922809
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g17750.1

Sequence Viewer

Length: 468 bp
ATGCACCACACCACTGAAGATTTTGAAAAACCGGGGTCCGTGTGGCATTTGGTTTACAGTTTCCAGTCACACTTCTCAACACAAACCCTGCTGCTTCTGCTTATCGTCTTCACCTATATAAATACGGTACCAACCCTCCTTTGCTTTCCACTTCATTCCATTCCACCTTATAAACTTACTCATAGGTTTCGCTTTATCAGTTTTCTGAGAACTTGGTTGGCAACAGAAGGAGAAGAAGAAGCAATCGAAATTCAAATGGAGGCAATTCAGTCCTGGGTTTCAGAACACAAGCTTACAAGCATTGGAGGAATATGGGCGTCAGCAGTTGGAGCATCTCTAGCCTATTCACGAACAAGAACACCCCTCAAGCCAAGCCTGAGGCTTATACATGCTAGGATGCACGCACAGGCCTTGACCCTGGCTGTCCTATCTGGTGCAGCAGTCTACCATTACTATGAGGAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

156

Amino Acids

17.75

Weight (kDa)

6.83

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 95 - 145 4.8e-10 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27760 AT5G27760
fragaria_vesca FvH4_7g25530
malus_domestica MD01G1162000.v1.1 MD07G1230200.v1.1
prunus_persica Prupe.2G260100_v2.0.a1
pyrus_communis pycom01g17750
rosa_chinensis RchiOBHm_Chr1g0371531
rosa_multiflora Rmu_sc0000809.1_g000015
rosa_rugosa Rorug01G0365100
rosa_samantha Rh1AG375000 Rh1BG338500 Rh1CG351800 Rh1DG369500
rosa_wichuraiana Rw1G032990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
Acc65I GGTACC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 129
AgsI TTSAA 2 cut(s) 26, 254
AjnI CCWGG 2 cut(s) 272, 417
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 91, 437
ApoI RAATTY 1 cut(s) 249
Asp718I GGTACC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 36
AxyI CCTNAGG 1 cut(s) 377
BanI GGYRCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 78, 449
BciT130I CCWGG 2 cut(s) 274, 419
BcnI CCSGG 1 cut(s) 33
BfaI CTAG 2 cut(s) 338, 393
BisI GCNGC 2 cut(s) 92, 438
BlsI GCNGC 2 cut(s) 93, 439
Bme1390I CCNGG 3 cut(s) 33, 274, 419
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 37, 129
BmrFI CCNGG 3 cut(s) 33, 274, 419
BmsI GCATC 2 cut(s) 341, 387
BpiI GAAGAC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 32, 273, 417
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bse1I ACTGG 1 cut(s) 64
Bse21I CCTNAGG 1 cut(s) 377
BseBI CCWGG 2 cut(s) 274, 419
BseDI CCNNGG 3 cut(s) 32, 273, 417
BseGI GGATG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 197, 368
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 78, 449
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 1 cut(s) 410
BshNI GGYRCC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 32
BsnI GGCC 1 cut(s) 410
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 2 cut(s) 198, 369
BspLI GGNNCC 2 cut(s) 37, 129
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 32, 273, 417
BssNI GRCGYC 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 274, 419
Bst4CI ACNGT 2 cut(s) 59, 127
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 2 cut(s) 206, 377
BstF5I GGATG 1 cut(s) 402
BstMWI GCNNNNNNNGC 3 cut(s) 97, 329, 338
BstNI CCWGG 2 cut(s) 274, 419
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 3 cut(s) 31, 272, 417
BstV1I GCAGC 2 cut(s) 78, 449
BstV2I GAAGAC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 377
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 389
CviJI RGCY 7 cut(s) 292, 341, 370, 375, 382, 410, 422
CviKI_1 RGCY 7 cut(s) 292, 341, 370, 375, 382, 410, 422
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 2 cut(s) 206, 377
Eco147I AGGCCT 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 272, 417
FaeI CATG 1 cut(s) 392
FaiI YATR 8 cut(s) 117, 119, 171, 183, 313, 386, 390, 456
FatI CATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 2 cut(s) 92, 438
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 92, 438
FspBI CTAG 2 cut(s) 338, 393
GluI GCNGC 2 cut(s) 92, 438
HaeIII GGCC 1 cut(s) 410
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 290
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 55, 445
Hpy188I TCNGA 2 cut(s) 207, 283
Hpy188III TCNNGA 1 cut(s) 348
Hpy8I GTNNAC 2 cut(s) 55, 445
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 59, 127
HpyCH4V TGCA 3 cut(s) 4, 400, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 329, 338
HpyF3I CTNAG 2 cut(s) 206, 377
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 1 cut(s) 392
KpnI GGTACC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 329, 460
Lsp1109I GCAGC 2 cut(s) 78, 449
LweI GCATC 2 cut(s) 341, 387
MaeI CTAG 2 cut(s) 338, 393
MaeIII GTNAC 1 cut(s) 66
MboII GAAGA 4 cut(s) 29, 100, 245, 248
MluCI AATT 2 cut(s) 249, 264
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 6 cut(s) 146, 253, 299, 372, 374, 451
MseI TTAA 1 cut(s) 466
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 33, 274, 419
MvaI CCWGG 2 cut(s) 274, 419
MwoI GCNNNNNNNGC 3 cut(s) 97, 329, 338
NciI CCSGG 1 cut(s) 33
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 2 cut(s) 37, 129
NmuCI GTSAC 1 cut(s) 66
NspI RCATGY 1 cut(s) 392
PceI AGGCCT 1 cut(s) 410
PkrI GCNGC 2 cut(s) 93, 439
PsiI TTATAA 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 272, 417
PspGI CCWGG 2 cut(s) 272, 417
PspN4I GGNNCC 2 cut(s) 37, 129
PspPI GGNCC 1 cut(s) 36
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 2 cut(s) 92, 438
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 33, 274, 419
SetI ASST 4 cut(s) 116, 169, 188, 294
SfaNI GCATC 2 cut(s) 341, 387
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 2 cut(s) 249, 264
SseBI AGGCCT 1 cut(s) 410
SspMI CTAG 2 cut(s) 338, 393
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 3 cut(s) 31, 272, 417
TaaI ACNGT 2 cut(s) 59, 127
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 249, 264
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 2 cut(s) 91, 437
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 143
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 249
XceI RCATGY 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 2 cut(s) 338, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.