Rh1BG338500

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015905
Physical Location & Seq
Reverse (-)
47260169 .. 47261470
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG338500.1

Sequence Viewer

Length: 237 bp
ATGGAGTCAATTCAATCTTGGGTTTCAAAGAACAAGCTGGCCAGCATTGGAGGACTATGGGCATCAGGAGTTGTAGCATCCCTTGCTTATTCAACTGCAAGAACACCTCTCAAGACCAGCCTTAAGCTTATACATGCTAGGATGCACGCACAAGCCTTGACGCTGGGTGTCCTATCCGCCGCGGCAGTCTTCCATTACTATGAAGAAGCACACAGTGCTGCTGCTTCTCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

78

Amino Acids

8.24

Weight (kDa)

9.6

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 10 - 60 2.9e-12 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27760 AT5G27760
fragaria_vesca FvH4_7g25530
malus_domestica MD01G1162000.v1.1 MD07G1230200.v1.1
prunus_persica Prupe.2G260100_v2.0.a1
pyrus_communis pycom01g17750
rosa_chinensis RchiOBHm_Chr1g0371531
rosa_multiflora Rmu_sc0000809.1_g000015
rosa_rugosa Rorug01G0365100
rosa_samantha Rh1AG375000 Rh1BG338500 Rh1CG351800 Rh1DG369500
rosa_wichuraiana Rw1G032990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 3 cut(s) 177, 180, 182
AcoI YGGCCR 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 215
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 14, 27, 93
AluBI AGCT 2 cut(s) 37, 127
AluI AGCT 2 cut(s) 37, 127
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 218, 221
BalI TGGCCA 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 205, 208
BfaI CTAG 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 4 cut(s) 180, 183, 219, 222
BlsI GCNGC 4 cut(s) 181, 184, 220, 223
BmsI GCATC 3 cut(s) 71, 86, 132
BpiI GAAGAC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 77, 147
BseXI GCAGC 2 cut(s) 205, 208
BseYI CCCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 41
BsnI GGCC 1 cut(s) 41
BspACI CCGC 3 cut(s) 177, 180, 182
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 122
BstAPI GCANNNNNTGC 2 cut(s) 83, 215
BstC8I GCNNGC 3 cut(s) 39, 43, 147
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 77, 147
BstFNI CGCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 83, 215
BstNSI RCATGY 1 cut(s) 137
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 205, 208
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 77, 147
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 39, 43, 147
Cfr42I CCGCGG 1 cut(s) 183
CseI GACGC 1 cut(s) 169
CviAII CATG 1 cut(s) 134
CviJI RGCY 5 cut(s) 37, 41, 120, 127, 155
CviKI_1 RGCY 5 cut(s) 37, 41, 120, 127, 155
DraIII CACNNNGTG 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 166
FaeI CATG 1 cut(s) 137
FaiI YATR 4 cut(s) 58, 131, 135, 201
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 180, 183, 219, 222
FokI GGATG 2 cut(s) 64, 154
Fsp4HI GCNGC 4 cut(s) 180, 183, 219, 222
FspBI CTAG 1 cut(s) 138
GluI GCNGC 4 cut(s) 180, 183, 219, 222
GsaI CCCAGC 1 cut(s) 167
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 169
Hin1II CATG 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 5
Hpy188III TCNNGA 2 cut(s) 66, 112
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 98, 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 215
Hsp92II CATG 1 cut(s) 137
KspI CCGCGG 1 cut(s) 183
LpnPI CCDG 5 cut(s) 23, 51, 55, 130, 149
Lsp1109I GCAGC 2 cut(s) 205, 208
LweI GCATC 3 cut(s) 71, 86, 132
MaeI CTAG 1 cut(s) 138
MboII GAAGA 2 cut(s) 181, 215
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 2 cut(s) 9, 232
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 44, 117
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 123, 235
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 122
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 83, 215
NlaIII CATG 1 cut(s) 137
NspI RCATGY 1 cut(s) 137
PkrI GCNGC 4 cut(s) 181, 184, 220, 223
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 198
SacII CCGCGG 1 cut(s) 183
SaqAI TTAA 2 cut(s) 123, 235
SatI GCNGC 4 cut(s) 180, 183, 219, 222
SchI GAGTC 1 cut(s) 14
SetI ASST 3 cut(s) 39, 109, 129
SfaNI GCATC 3 cut(s) 71, 86, 132
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 110, 122
SmoI CTYRAG 2 cut(s) 110, 122
Sse9I AATT 2 cut(s) 9, 232
SsiI CCGC 3 cut(s) 177, 180, 182
SspMI CTAG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 215
TasI AATT 2 cut(s) 9, 232
TauI GCSGC 2 cut(s) 182, 185
Tru1I TTAA 2 cut(s) 123, 235
Tru9I TTAA 2 cut(s) 123, 235
TscAI CASTG 1 cut(s) 220
TseI GCWGC 2 cut(s) 218, 221
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 122
XceI RCATGY 1 cut(s) 137
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.