Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005223

Physical Location & Seq

Genomic Coordinates Reverse (-)

9862923 .. 9865172

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATGACGAGTATGGAAGGGATGGTGGAGAAAGGAGTATTGGATGATATTATAAGAAGATTGTTAGAAGGTAAAGGAGGCAAACAGGTTCAGCTTTCCGAGAGCGAGATTCGTCAACTCTGCTTTAACGCTCGTCAAATCTTCCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCGGTGATATTCATGGTCAATATCAAGATCTTTTGAGGTTGTTTGAATACGGAGGTTATCCTCCTTCAGCAAACTATCTATTCCTTGGTGATTACGTTGACAGAGGCAAACAAAGTCTTGAGACCATATGTTTGCTTCTTGCTTACAAGATACGGTACCCATCGAAGATATATCTGTTGAGAGGGAACCATGAGGATGCTAAGATCAACAGGATTTACGGGTTTTATGACGAGTGCAAACGGAGATTCAATGTACGACTCTGGAAGGTGTTTACTGATTGCTTCAACTGTTTACCTGTAGCTGCACTTATTGATGAGAAGATACTGTGTATGCACGGTGGTTTGTCACCAGATTTGGATAATTTGAATCAGATTCGAGAGATTCAAAGGCCTATTGAGATTCCAGACAGTGGTCTTCTTTGTGATTTACTTTGGTCAGATCCTGATCAGAAGATTGAAGGTTGGGCTGATAGTGATCGAGGTATCTCTTGCACTTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCGAGGCCATCAGGTAGTAGAAGACGGGTATGAGTTTTTCGCAAAACGGAGATTAGTCACGATATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAACGCTGGTGCGTTATTAAGCGTTGACGAGTCTCTTGTATGTTCCTTTGAGATTATGAAACCAGCCCCAGCTTCAAGCAGTCATCCTCTCAAGAAGGTACCGAAGATGGGGAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

318

Amino Acids

36.04

Weight (kDa)

5.49

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	14 - 57	3.1e-19	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	60 - 253	5.6e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05580 AT3G05580 AT5G27840 AT5G27840 AT5G27840 AT5G27840
fragaria_vesca	FvH4_6g06810 FvH4_6g06810
malus_domestica	MD04G1083500.v1.1 MD04G1198300.v1.1 MD12G1210900.v1.1
prunus_persica	Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1
pyrus_communis	pycom04g17540 pycom12g19800
rosa_chinensis	RchiOBHm_Chr3g0456301
rosa_laevigata	RLG00000025314
rosa_multiflora	Rmu_sc0002607.1_g000030
rosa_roxburghii	Rroxscaffold_6G00422880
rosa_rugosa	Rorug03G0012600 Rorug03G0012600
rosa_samantha	Rh3AG072500 Rh3BG074500 Rh3CG074100 Rh3DG076000
rosa_wichuraiana	Rw3G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
Acc65I	GGTACC	2 cut(s)	345, 934
AccB1I	GGYRCC	2 cut(s)	345, 934
AccB7I	CCANNNNNTGG	2 cut(s)	599, 821
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	347, 444, 936
AfiI	CCNNNNNNNGG	3 cut(s)	599, 821, 944
AgsI	TTSAA	7 cut(s)	236, 439, 475, 556, 575, 647, 912
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	94, 491, 692, 812, 908
AluI	AGCT	5 cut(s)	94, 491, 692, 812, 908
Alw26I	GTCTC	2 cut(s)	305, 873
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	578, 745
ApeKI	GCWGC	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
Asp718I	GGTACC	2 cut(s)	345, 934
AsuHPI	GGTGA	3 cut(s)	206, 290, 528
BanI	GGYRCC	2 cut(s)	345, 934
BbsI	GAAGAC	2 cut(s)	596, 768
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	4 cut(s)	16, 358, 756, 937
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	305, 873
BfmI	CTRYAG	1 cut(s)	486
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
BmiI	GGNNCC	3 cut(s)	347, 377, 936
BmsI	GCATC	2 cut(s)	195, 376
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	2 cut(s)	596, 768
BpuEI	CTTGAG	2 cut(s)	329, 911
BsaBI	GATNNNNATC	2 cut(s)	633, 663
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	274, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	599, 821, 944
Bse8I	GATNNNNATC	2 cut(s)	633, 663
BseDI	CCNNGG	2 cut(s)	274, 742
BseGI	GGATG	4 cut(s)	27, 49, 391, 919
BseJI	GATNNNNATC	2 cut(s)	633, 663
BseLI	CCNNNNNNNGG	3 cut(s)	599, 821, 944
BseMII	CTCAG	2 cut(s)	696, 822
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	904
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	580, 747
BshNI	GGYRCC	2 cut(s)	345, 934
BslI	CCNNNNNNNGG	3 cut(s)	599, 821, 944
BsmAI	GTCTC	2 cut(s)	305, 873
BsnI	GGCC	2 cut(s)	580, 747
Bso31I	GGTCTC	1 cut(s)	305
Bsp143I	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	2 cut(s)	580, 747
BspCNI	CTCAG	2 cut(s)	697, 821
BspLI	GGNNCC	3 cut(s)	347, 377, 936
BspPI	GGATC	1 cut(s)	623
BspT107I	GGYRCC	2 cut(s)	345, 934
BspTNI	GGTCTC	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	274, 742
BssMI	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
BssT1I	CCWWGG	1 cut(s)	274
Bst4CI	ACNGT	5 cut(s)	345, 479, 516, 527, 599
BstDEI	CTNAG	3 cut(s)	390, 705, 808
BstF5I	GGATG	4 cut(s)	27, 49, 391, 919
BstKTI	GATC	7 cut(s)	169, 220, 396, 631, 637, 667, 727
BstMAI	GTCTC	2 cut(s)	305, 873
BstMBI	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	2 cut(s)	596, 768
BstX2I	RGATCY	2 cut(s)	217, 628
BstYI	RGATCY	2 cut(s)	217, 628
BsuRI	GGCC	2 cut(s)	580, 747
BtsCI	GGATG	4 cut(s)	27, 49, 391, 919
BtsIMutI	CAGTG	1 cut(s)	604
CaiI	CAGNNNCTG	1 cut(s)	632
Csp6I	GTAC	3 cut(s)	346, 443, 935
CviAII	CATG	3 cut(s)	173, 203, 380
CviJI	RGCY	9 cut(s)	94, 491, 580, 656, 692, 747, 812, 902, 908
CviKI_1	RGCY	9 cut(s)	94, 491, 580, 656, 692, 747, 812, 902, 908
CviQI	GTAC	3 cut(s)	346, 443, 935
DdeI	CTNAG	3 cut(s)	390, 705, 808
DpnI	GATC	7 cut(s)	168, 219, 395, 630, 636, 666, 726
DpnII	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
Eco130I	CCWWGG	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	3 cut(s)	176, 206, 383
FatI	CATG	3 cut(s)	172, 202, 379
FauNDI	CATATG	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	4 cut(s)	34, 56, 398, 906
Fsp4HI	GCNGC	1 cut(s)	492
GluI	GCNGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	908
HaeIII	GGCC	2 cut(s)	580, 747
Hin1II	CATG	3 cut(s)	176, 206, 383
HincII	GTYRAC	3 cut(s)	116, 289, 862
HindII	GTYRAC	3 cut(s)	116, 289, 862
HinfI	GANTC	8 cut(s)	109, 435, 447, 556, 562, 571, 589, 866
HphI	GGTGA	3 cut(s)	206, 290, 528
Hpy166II	GTNNAC	5 cut(s)	116, 289, 462, 482, 862
Hpy188I	TCNGA	4 cut(s)	100, 561, 628, 639
Hpy8I	GTNNAC	5 cut(s)	116, 289, 462, 482, 862
HpyAV	CCTTC	6 cut(s)	11, 62, 264, 448, 641, 925
HpyCH4III	ACNGT	5 cut(s)	345, 479, 516, 527, 599
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	426, 494, 523, 681
HpyF3I	CTNAG	3 cut(s)	390, 705, 808
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	176, 206, 383
KpnI	GGTACC	2 cut(s)	349, 938
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
LmnI	GCTCC	2 cut(s)	689, 817
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	195, 376
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	534, 796
MalI	GATC	7 cut(s)	168, 219, 395, 630, 636, 666, 726
MboI	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
MboII	GAAGA	8 cut(s)	69, 133, 367, 520, 596, 652, 773, 952
MflI	RGATCY	2 cut(s)	217, 628
MluCI	AATT	2 cut(s)	180, 550
MlyI	GAGTC	2 cut(s)	441, 875
MseI	TTAA	2 cut(s)	126, 854
MslI	CAYNNNNRTG	1 cut(s)	384
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
NlaIII	CATG	3 cut(s)	176, 206, 383
NlaIV	GGNNCC	3 cut(s)	347, 377, 936
NmeAIII	GCCGAG	1 cut(s)	767
NmuCI	GTSAC	2 cut(s)	534, 796
PceI	AGGCCT	1 cut(s)	580
PfeI	GAWTC	6 cut(s)	109, 435, 556, 562, 571, 589
PflMI	CCANNNNNTGG	2 cut(s)	599, 821
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	2 cut(s)	441, 874
PpsI	GAGTC	2 cut(s)	441, 874
PshAI	GACNNNNGTC	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	904
PspN4I	GGNNCC	3 cut(s)	347, 377, 936
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	217, 628
RsaI	GTAC	3 cut(s)	347, 444, 936
RsaNI	GTAC	3 cut(s)	346, 443, 935
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	126, 854
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	7 cut(s)	166, 217, 393, 628, 634, 664, 724
SchI	GAGTC	2 cut(s)	441, 875
SfaNI	GCATC	2 cut(s)	195, 376
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	308, 926
SmoI	CTYRAG	2 cut(s)	308, 926
Sse9I	AATT	2 cut(s)	180, 550
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	580
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	5 cut(s)	345, 479, 516, 527, 599
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	353, 565, 667
TasI	AATT	2 cut(s)	180, 550
TfiI	GAWTC	6 cut(s)	109, 435, 556, 562, 571, 589
Tru1I	TTAA	2 cut(s)	126, 854
Tru9I	TTAA	2 cut(s)	126, 854
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	2 cut(s)	534, 796
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	534, 796
TspDTI	ATGAA	2 cut(s)	191, 908
TspGWI	ACGGA	3 cut(s)	255, 445, 802
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	2 cut(s)	599, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.