Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005223

Physical Location & Seq

Genomic Coordinates Reverse (-)

28940837 .. 28943702

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1210900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGATGATGATGACAATGGAGGGGATGATGGATAAGGGTGTGTTGGATGATATAATCAGGAGGTTGTTGGAAGGCAAAGGAGGGAAGCAAGTGCAGCTATCGGAGGCGGAGATCCGGCAGCTCTGCGTCAACGCCCGCCAAATCTTCCTCGCTCAGCCTAATCTTCTCGAGGTCCGAGCTCCGGTTCGCATATGCGGTGATATACATGGACAATACCAAGACTTACTAAGGGTGTTTGAATACGGTGGTTACCCTCCTTCTGCAAACTACCTGTTTCTAGGAGATTATGTAGATCGAGGAAAGCAAAGTTTGGAGACAATCTGTTTGCTTCTGGCCTACAAAATAAAATATCCTGACAAAGTTTTCCTTTTGAGGGGAAACCATGAAGATGCAAAGATTAATCGAATATATGGGTTCTATGACGAGTGCAAAAGGAGGTTTAATGTTAGGCTTTGGAAAATATTTACCGAGTGCTTTAATTGTTTGCCTGTGGCTGCACTTATTGATGGGAAGATACTTTGTATGCATGGCGGGCTCTCACCAGAGTTGGAAAACTTGGACCAAATAAAGGAAATTTCAAGGCCAACTGACATTCCAGATAATGGTCTTTTATGCGATCTGCTTTGGTCGGATCCTGATGCTAGGGTTGAAGGCTGGGCAGAGAGTGATCGAGGTGTTTCCTGTACTTTTGGAGCCGATAGAGTTATTGACTTTTTAGATAAGAATGAACTTGATCTCGTTTGCCGGGGTCATCAGGTGGTGGAGGATGGCTATGAGTTTTTTGCAAAACGAAGATTAGTCACAATATTTTCAGCTCCAAACTATGGCGGGGAGTTTGATAATGCCGGTGCTCTGTTGAGCGTTGATGAAGCTCTAGTGTGTTCCTTTGAGATATTGAAACCAGTTGATCATAAAGCATCCCCGAGTGGTTCAAAGTCAAATCTTAAAAAGACTCCTAAAACCCGAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

325

Amino Acids

36.67

Weight (kDa)

5.69

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	15 - 58	1.6e-19	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	61 - 254	1.6e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05580 AT3G05580 AT5G27840 AT5G27840 AT5G27840 AT5G27840
fragaria_vesca	FvH4_6g06810 FvH4_6g06810
malus_domestica	MD04G1083500.v1.1 MD04G1198300.v1.1 MD12G1210900.v1.1
prunus_persica	Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1
pyrus_communis	pycom04g17540 pycom12g19800
rosa_chinensis	RchiOBHm_Chr3g0456301
rosa_laevigata	RLG00000025314
rosa_multiflora	Rmu_sc0002607.1_g000030
rosa_roxburghii	Rroxscaffold_6G00422880
rosa_rugosa	Rorug03G0012600 Rorug03G0012600
rosa_samantha	Rh3AG072500 Rh3BG074500 Rh3CG074100 Rh3DG076000
rosa_wichuraiana	Rw3G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	602, 824
AciI	CCGC	5 cut(s)	107, 136, 195, 531, 828
AclWI	GGATC	3 cut(s)	106, 626, 639
AcsI	RAATTY	1 cut(s)	573
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	5 cut(s)	181, 373, 568, 602, 824
AgsI	TTSAA	5 cut(s)	239, 579, 650, 898, 933
AluBI	AGCT	5 cut(s)	97, 121, 179, 815, 872
AluI	AGCT	5 cut(s)	97, 121, 179, 815, 872
Alw21I	GWGCWC	2 cut(s)	181, 853
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	3 cut(s)	106, 626, 639
Ama87I	CYCGRG	2 cut(s)	167, 922
AoxI	GGCC	2 cut(s)	333, 581
ApeKI	GCWGC	3 cut(s)	94, 118, 494
ApoI	RAATTY	1 cut(s)	573
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AseI	ATTAAT	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	172, 559
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	209, 531
AvaI	CYCGRG	2 cut(s)	167, 922
AvaII	GGWCC	2 cut(s)	172, 559
BamHI	GGATCC	1 cut(s)	631
BanII	GRGCYC	2 cut(s)	181, 537
Bbv12I	GWGCWC	2 cut(s)	181, 853
BbvI	GCAGC	3 cut(s)	106, 130, 481
BccI	CCATC	3 cut(s)	22, 500, 761
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	3 cut(s)	278, 642, 875
BisI	GCNGC	3 cut(s)	95, 119, 495
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	3 cut(s)	96, 120, 496
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	172, 559
BmeT110I	CYCGRG	2 cut(s)	167, 922
BmgT120I	GGNCC	2 cut(s)	172, 559
BmiI	GGNNCC	2 cut(s)	633, 694
BmrFI	CCNGG	1 cut(s)	746
BmsI	GCATC	3 cut(s)	379, 628, 926
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	746
BsaJI	CCNNGG	1 cut(s)	745
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 373, 568, 602, 824
Bse118I	RCCGGY	1 cut(s)	845
Bse1I	ACTGG	1 cut(s)	902
BseDI	CCNNGG	1 cut(s)	745
BseGI	GGATG	4 cut(s)	30, 52, 772, 917
BseLI	CCNNNNNNNGG	5 cut(s)	181, 373, 568, 602, 824
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	902
BseXI	GCAGC	3 cut(s)	106, 130, 481
BseYI	CCCAGC	1 cut(s)	654
BsgI	GTGCAG	2 cut(s)	113, 480
BshFI	GGCC	2 cut(s)	335, 583
BsiHKAI	GWGCWC	2 cut(s)	181, 853
BsiHKCI	CYCGRG	2 cut(s)	167, 922
BsiSI	CCGG	4 cut(s)	115, 182, 745, 846
BslI	CCNNNNNNNGG	5 cut(s)	181, 373, 568, 602, 824
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	335, 583
BsoBI	CYCGRG	2 cut(s)	167, 922
Bsp1286I	GDGCHC	3 cut(s)	181, 537, 853
Bsp143I	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	5 cut(s)	107, 136, 195, 531, 828
BspANI	GGCC	2 cut(s)	335, 583
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	633, 694
BspPI	GGATC	3 cut(s)	106, 626, 639
BsrFI	RCCGGY	1 cut(s)	845
BsrI	ACTGG	1 cut(s)	902
BssAI	RCCGGY	1 cut(s)	845
BssECI	CCNNGG	1 cut(s)	745
BssMI	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
Bst4CI	ACNGT	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	136, 533
BstDEI	CTNAG	2 cut(s)	153, 227
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	30, 52, 772, 917
BstKTI	GATC	7 cut(s)	114, 295, 619, 634, 670, 736, 910
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 532
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	744
BstV1I	GCAGC	3 cut(s)	106, 130, 481
BstX2I	RGATCY	2 cut(s)	111, 631
BstYI	RGATCY	2 cut(s)	111, 631
BsuRI	GGCC	2 cut(s)	335, 583
BtsCI	GGATG	4 cut(s)	30, 52, 772, 917
Cac8I	GCNNGC	2 cut(s)	136, 533
Cfr10I	RCCGGY	1 cut(s)	845
Cfr13I	GGNCC	2 cut(s)	172, 559
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	3 cut(s)	206, 383, 527
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	2 cut(s)	153, 227
DpnI	GATC	7 cut(s)	113, 294, 618, 633, 669, 735, 909
DpnII	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	2 cut(s)	181, 537
Eco47I	GGWCC	2 cut(s)	172, 559
Eco53kI	GAGCTC	1 cut(s)	179
Eco88I	CYCGRG	2 cut(s)	167, 922
Eco91I	GGTNACC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	181, 537
FaeI	CATG	3 cut(s)	209, 386, 530
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	3 cut(s)	205, 382, 526
FauI	CCCGC	3 cut(s)	143, 524, 821
FauNDI	CATATG	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	907
Fnu4HI	GCNGC	3 cut(s)	95, 119, 495
FokI	GGATG	4 cut(s)	37, 59, 779, 904
FriOI	GRGCYC	2 cut(s)	181, 537
Fsp4HI	GCNGC	3 cut(s)	95, 119, 495
FspBI	CTAG	3 cut(s)	278, 642, 875
GluI	GCNGC	3 cut(s)	95, 119, 495
GsaI	CCCAGC	1 cut(s)	658
HaeIII	GGCC	2 cut(s)	335, 583
HapII	CCGG	4 cut(s)	115, 182, 745, 846
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	209, 386, 530
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	952
HpaII	CCGG	4 cut(s)	115, 182, 745, 846
HphI	GGTGA	2 cut(s)	209, 531
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	103, 176, 631
Hpy188III	TCNNGA	5 cut(s)	58, 167, 353, 596, 635
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	65, 267, 644
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	7 cut(s)	94, 263, 392, 429, 497, 526, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 532
HpyF3I	CTNAG	2 cut(s)	153, 227
Hsp92II	CATG	3 cut(s)	209, 386, 530
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
LmnI	GCTCC	3 cut(s)	184, 692, 820
Lsp1109I	GCAGC	3 cut(s)	106, 130, 481
LweI	GCATC	3 cut(s)	379, 628, 926
MaeI	CTAG	3 cut(s)	278, 642, 875
MaeIII	GTNAC	2 cut(s)	248, 799
MalI	GATC	7 cut(s)	113, 294, 618, 633, 669, 735, 909
MboI	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
MboII	GAAGA	5 cut(s)	136, 155, 398, 523, 804
MflI	RGATCY	2 cut(s)	111, 631
MhlI	GDGCHC	3 cut(s)	181, 537, 853
MluCI	AATT	2 cut(s)	478, 573
MlyI	GAGTC	1 cut(s)	946
MmeI	TCCRAC	4 cut(s)	24, 48, 528, 609
Mph1103I	ATGCAT	1 cut(s)	528
MseI	TTAA	4 cut(s)	399, 441, 477, 945
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	4 cut(s)	115, 182, 745, 846
MspR9I	CCNGG	1 cut(s)	746
MwoI	GCNNNNNNNGC	2 cut(s)	94, 532
NciI	CCSGG	1 cut(s)	746
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
NlaIII	CATG	3 cut(s)	209, 386, 530
NlaIV	GGNNCC	2 cut(s)	633, 694
NmuCI	GTSAC	1 cut(s)	799
NsiI	ATGCAT	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	167
PflMI	CCANNNNNTGG	2 cut(s)	602, 824
PkrI	GCNGC	3 cut(s)	96, 120, 496
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
PshBI	ATTAAT	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	633, 694
PspPI	GGNCC	2 cut(s)	172, 559
PsuI	RGATCY	2 cut(s)	111, 631
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	4 cut(s)	399, 441, 477, 945
SatI	GCNGC	3 cut(s)	95, 119, 495
Sau3AI	GATC	7 cut(s)	111, 292, 616, 631, 667, 733, 907
Sau96I	GGNCC	2 cut(s)	172, 559
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	1 cut(s)	746
SduI	GDGCHC	3 cut(s)	181, 537, 853
SfaNI	GCATC	3 cut(s)	379, 628, 926
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	172, 559
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	478, 573
SsiI	CCGC	5 cut(s)	107, 136, 195, 531, 828
SspI	AATATT	2 cut(s)	462, 807
SspMI	CTAG	3 cut(s)	278, 642, 875
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	744
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	4 cut(s)	168, 295, 403, 670
TasI	AATT	2 cut(s)	478, 573
TatI	WGTACW	1 cut(s)	683
Tru1I	TTAA	4 cut(s)	399, 441, 477, 945
Tru9I	TTAA	4 cut(s)	399, 441, 477, 945
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	3 cut(s)	94, 118, 494
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	3 cut(s)	399, 741, 882
Van91I	CCANNNNNTGG	2 cut(s)	602, 824
VpaK11BI	GGWCC	2 cut(s)	172, 559
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	573
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	3 cut(s)	278, 642, 875
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.