MD04G1083500.v1.1

Serine threonine-protein phosphatase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
11955473 .. 11956621
1149 bp
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UTR
Exon/CDS
Intron
MD04G1083500.v1.1.491

Sequence Viewer

Length: 336 bp
ATGCTAGGGTTGAGGGCTGGGCGGAGAGCGATCGAGGTGTTTCCTGTACTTTTGGAGCTGATAGAGTTAGTTAGTGATTTTCTAGATAAGAATGAGCTGGATCTCATTTGCCGGGGTCATCAGGTGGTGGAGGATGGCTATGAGTTTTTCGCAAAACGAAGATTAGTCACAATATTTTCAGCTCCTAACTATGGCGGGGAGTTTGATAATGCCGGTGCTCTATTGAGTGTTGATGAAGCTCTGGTGTGTTCCTTTGAGATATTGAAACCAGTTGATCATAAAGCGTCCCCGAGTGGTTCAAAGTTAAATCTTAAAAAGCCTCCTAAAAAGAACTGA

Protein Analysis

112

Amino Acids

12.33

Weight (kDa)

6.1

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 195
AclWI GGATC 1 cut(s) 108
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 265, 300
AluBI AGCT 4 cut(s) 58, 97, 182, 239
AluI AGCT 4 cut(s) 58, 97, 182, 239
Alw21I GWGCWC 1 cut(s) 220
AlwI GGATC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 220
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 5, 83
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 112, 213
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 30, 100, 274
BspACI CCGC 2 cut(s) 22, 195
BspPI GGATC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 3 cut(s) 30, 100, 274
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 3 cut(s) 33, 103, 277
BstMBI GATC 3 cut(s) 30, 100, 274
BstMCI CGRYCG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtsCI GGATG 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 212
CseI GACGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 47
CviJI RGCY 7 cut(s) 17, 58, 97, 138, 182, 239, 319
CviKI_1 RGCY 7 cut(s) 17, 58, 97, 138, 182, 239, 319
CviQI GTAC 1 cut(s) 47
DpnI GATC 3 cut(s) 32, 102, 276
DpnII GATC 3 cut(s) 30, 100, 274
EciI GGCGGA 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 289
FaiI YATR 3 cut(s) 141, 192, 279
FaqI GGGAC 1 cut(s) 271
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 274
FokI GGATG 1 cut(s) 146
FspBI CTAG 2 cut(s) 5, 83
GsaI CCCAGC 1 cut(s) 21
HapII CCGG 2 cut(s) 112, 213
HgaI GACGC 1 cut(s) 273
HpaII CCGG 2 cut(s) 112, 213
Hpy188III TCNNGA 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 30, 100, 274
LmnI GCTCC 2 cut(s) 55, 187
LpnPI CCDG 8 cut(s) 3, 57, 83, 107, 125, 226, 227, 282
MaeI CTAG 2 cut(s) 5, 83
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 32, 102, 276
MboI GATC 3 cut(s) 30, 100, 274
MboII GAAGA 1 cut(s) 171
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 220
MnlI CCTC 4 cut(s) 6, 28, 124, 330
MseI TTAA 2 cut(s) 305, 312
MspI CCGG 2 cut(s) 112, 213
MspR9I CCNGG 1 cut(s) 113
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 30, 100, 274
NmuCI GTSAC 1 cut(s) 166
Ple19I CGATCG 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 100
PvuI CGATCG 1 cut(s) 33
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 305, 312
Sau3AI GATC 3 cut(s) 30, 100, 274
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 220
SetI ASST 6 cut(s) 39, 60, 99, 126, 184, 241
SsiI CCGC 2 cut(s) 22, 195
SspI AATATT 1 cut(s) 174
SspMI CTAG 2 cut(s) 5, 83
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 33
TatI WGTACW 1 cut(s) 46
Tru1I TTAA 2 cut(s) 305, 312
Tru9I TTAA 2 cut(s) 305, 312
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 249
XbaI TCTAGA 1 cut(s) 82
XspI CTAG 2 cut(s) 5, 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.