Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005223

Physical Location & Seq

Genomic Coordinates Reverse (-)

43644956 .. 43648072

Gene Structure 3117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCGGTGTCTTACAGGTGATATACATGGACAATACCAAGACCTACTTAAAGTATTTGAACAGGGGGGTTACCCTCCCGCCGCAAACTACCTATTTCTTGGAGATTATGTGGATCGAGGCAAGCAAAGCTTGGAGACAATATGTTTGCTTCTGGCCTACAAAATAAAATATCCTGAAAAAGTTTTCCTTTTGAGAGGAAACCATGAAGATGCAAAGATTAACCGGATATATGGGTTCTATGACGAGTGTAAAAGGCGGTTCAACGTTAGGCTTTGGAAAATTTTTACTGACTGCTTTAATTGTTTGCCTGTGTCTGCACTTATTGATGGGAAGATACTTTGTATGCATGGTGGACTCTCACCAGAGTTGGAAAACTTGGATCAAATAAAGGAACTTCCAAGGCCGACTGACATTCCAGATAATGGTCTTTTATGTGATTTGCTTTGGTCTGATCCTGATGCTAGGGTTGAAGGCTGGGCAGAGAGTGATCGCGGTGTTTCCTGTACTTTTGGAGCTGATAGAGTTATTGAATTTTTAGACAAGAATGACCTTGATCTCGTTTGTCGGGGCCATCAGGTGGTTGAGGACGGCTATGAATTTTTCGCGAAACGAAGATTAGTCACTATATTCTCAGCTCCAAACTACGGAGGGGAGTTTGATAATGCCGGTGCTCTAATGAGTGTTGATGAAGCTCTACTGTGTTCCTTTGAGATACTTAAATCAAGTGCTGATGAAGCCTCAAGTAGTCGTTTAAACCTTAAAAAGCCGCCTAAAGCTGGAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

262

Amino Acids

29.56

Weight (kDa)

5.15

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	4 - 194	3.1e-49	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05580 AT3G05580 AT5G27840 AT5G27840 AT5G27840 AT5G27840
fragaria_vesca	FvH4_6g06810 FvH4_6g06810
malus_domestica	MD04G1083500.v1.1 MD04G1198300.v1.1 MD12G1210900.v1.1
prunus_persica	Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1
pyrus_communis	pycom04g17540 pycom12g19800
rosa_chinensis	RchiOBHm_Chr3g0456301
rosa_laevigata	RLG00000025314
rosa_multiflora	Rmu_sc0002607.1_g000030
rosa_roxburghii	Rroxscaffold_6G00422880
rosa_rugosa	Rorug03G0012600 Rorug03G0012600
rosa_samantha	Rh3AG072500 Rh3BG074500 Rh3CG074100 Rh3DG076000
rosa_wichuraiana	Rw3G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	422, 577
AccII	CGCG	2 cut(s)	492, 605
AciI	CCGC	6 cut(s)	4, 78, 81, 256, 492, 767
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	3 cut(s)	120, 387, 446
AcsI	RAATTY	3 cut(s)	279, 530, 596
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	4 cut(s)	422, 577, 644, 776
AgsI	TTSAA	4 cut(s)	59, 262, 470, 530
AluBI	AGCT	5 cut(s)	129, 515, 635, 692, 776
AluI	AGCT	5 cut(s)	129, 515, 635, 692, 776
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	120, 387, 446
AoxI	GGCC	3 cut(s)	153, 401, 568
ApoI	RAATTY	3 cut(s)	279, 530, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	29, 351
Bbv12I	GWGCWC	1 cut(s)	673
BccI	CCATC	2 cut(s)	320, 579
BceAI	ACGGC	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	2 cut(s)	81, 767
BlsI	GCNGC	2 cut(s)	82, 768
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	569
BmsI	GCATC	2 cut(s)	199, 448
BpuEI	CTTGAG	1 cut(s)	724
BsaJI	CCNNGG	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	4 cut(s)	422, 577, 644, 776
Bse118I	RCCGGY	1 cut(s)	665
BseDI	CCNNGG	1 cut(s)	398
BseLI	CCNNNNNNNGG	4 cut(s)	422, 577, 644, 776
BseMII	CTCAG	1 cut(s)	645
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	492, 605
BshFI	GGCC	3 cut(s)	155, 403, 570
BsiHKAI	GWGCWC	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	223, 666
BslI	CCNNNNNNNGG	4 cut(s)	422, 577, 644, 776
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	155, 403, 570
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp143I	GATC	5 cut(s)	112, 379, 451, 487, 553
Bsp68I	TCGCGA	1 cut(s)	605
BspACI	CCGC	6 cut(s)	4, 78, 81, 256, 492, 767
BspANI	GGCC	3 cut(s)	155, 403, 570
BspCNI	CTCAG	1 cut(s)	644
BspFNI	CGCG	2 cut(s)	492, 605
BspLI	GGNNCC	1 cut(s)	569
BspPI	GGATC	3 cut(s)	120, 387, 446
BsrFI	RCCGGY	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	5 cut(s)	112, 379, 451, 487, 553
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	699
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	631
BstEII	GGTNACC	1 cut(s)	68
BstFNI	CGCG	2 cut(s)	492, 605
BstKTI	GATC	5 cut(s)	115, 382, 454, 490, 556
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	112, 379, 451, 487, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 734
BstPI	GGTNACC	1 cut(s)	68
BstUI	CGCG	2 cut(s)	492, 605
BsuRI	GGCC	3 cut(s)	155, 403, 570
BtuMI	TCGCGA	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	3 cut(s)	26, 203, 347
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	631
DpnI	GATC	5 cut(s)	114, 381, 453, 489, 555
DpnII	GATC	5 cut(s)	112, 379, 451, 487, 553
DraI	TTTAAA	1 cut(s)	753
Eco130I	CCWWGG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	68
EcoO65I	GGTNACC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	3 cut(s)	29, 206, 350
FalI	AAGNNNNNCTT	6 cut(s)	30, 62, 113, 145, 171, 203
FatI	CATG	3 cut(s)	25, 202, 346
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	81, 767
Fsp4HI	GCNGC	2 cut(s)	81, 767
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	2 cut(s)	81, 767
GsaI	CCCAGC	1 cut(s)	478
HaeIII	GGCC	3 cut(s)	155, 403, 570
HapII	CCGG	2 cut(s)	223, 666
Hin1II	CATG	3 cut(s)	29, 206, 350
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	2 cut(s)	223, 666
HphI	GGTGA	2 cut(s)	29, 351
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	4 cut(s)	173, 416, 455, 604
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	212, 317, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 734
HpyF3I	CTNAG	1 cut(s)	631
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	29, 206, 350
Kzo9I	GATC	5 cut(s)	112, 379, 451, 487, 553
LmnI	GCTCC	2 cut(s)	512, 640
LweI	GCATC	2 cut(s)	199, 448
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	68, 619
MalI	GATC	5 cut(s)	114, 381, 453, 489, 555
MboI	GATC	5 cut(s)	112, 379, 451, 487, 553
MboII	GAAGA	3 cut(s)	218, 343, 624
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	4 cut(s)	279, 298, 530, 596
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	6 cut(s)	84, 110, 188, 577, 641, 748
Mph1103I	ATGCAT	1 cut(s)	348
MseI	TTAA	6 cut(s)	48, 219, 297, 717, 752, 759
MslI	CAYNNNNRTG	1 cut(s)	207
MspI	CCGG	2 cut(s)	223, 666
MssI	GTTTAAAC	1 cut(s)	753
MvnI	CGCG	2 cut(s)	492, 605
MwoI	GCNNNNNNNGC	2 cut(s)	126, 734
NdeII	GATC	5 cut(s)	112, 379, 451, 487, 553
NlaIII	CATG	3 cut(s)	29, 206, 350
NlaIV	GGNNCC	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	619
NruI	TCGCGA	1 cut(s)	605
NsiI	ATGCAT	1 cut(s)	348
PflMI	CCANNNNNTGG	2 cut(s)	422, 577
PkrI	GCNGC	2 cut(s)	82, 768
PleI	GAGTC	1 cut(s)	348
PmeI	GTTTAAAC	1 cut(s)	753
PpsI	GAGTC	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	568
RruI	TCGCGA	1 cut(s)	605
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	6 cut(s)	48, 219, 297, 717, 752, 759
SatI	GCNGC	2 cut(s)	81, 767
Sau3AI	GATC	5 cut(s)	112, 379, 451, 487, 553
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	199, 448
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	739
SmoI	CTYRAG	1 cut(s)	739
Sse9I	AATT	4 cut(s)	279, 298, 530, 596
SsiI	CCGC	6 cut(s)	4, 78, 81, 256, 492, 767
SspMI	CTAG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	699
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	279, 298, 530, 596
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	2 cut(s)	83, 769
Tru1I	TTAA	6 cut(s)	48, 219, 297, 717, 752, 759
Tru9I	TTAA	6 cut(s)	48, 219, 297, 717, 752, 759
TseFI	GTSAC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	4 cut(s)	219, 609, 702, 747
TspGWI	ACGGA	1 cut(s)	660
Van91I	CCANNNNNTGG	2 cut(s)	422, 577
XapI	RAATTY	3 cut(s)	279, 530, 596
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.