Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0005223

Physical Location & Seq

Genomic Coordinates Reverse (-)

181868 .. 184023

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002607.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggaggggatgatggataaaggtgtattggatgatataataaggaggttattggaaggcaaaggagggaaacaagtgcagctttcagaggcagagatccgtcaactttgcgtcaacgcccgccaaatcttcctttcccagcctaatcttcttgaggttcgagccccaattcacatatgtggtgatatacatggacaataccaagacctacttaaagtatttgaacaggggggttaccctcccgccgcaaactacctatttcttggagattatgtggatcgaggcaagcaaagcttggagacaatatgtttgcttctggcctacaaaataaaatatcctgaaaaagtcttccttttgagaggaaaccatgaagatgcaaagattaaccggatatatgggttctatgacgagtgtaaaaggcggttcaacgttaggctttggaaaatttttactgactgctttaattgtttgcctgtgtctgcacttattgatgggaagatactttgtatgcatggtgggctctcaccagagttggaaaacttggatcaaataaaggaacttccaaggccgactgacattccagataatggtcttttatgtgatttgctttggtctgatcctgatgctagggttgatggctgggcagagagtgatcgcggtgtttcctgtacttttggagctgatagagttattgaatttttagacaagaatgaccttgatctcgtttgtcggggtcatcaggtggttgaggacggctatgaatttttcgcgaaacgaagattagtcactatattctcagctccaaactacggaggggagtttgataatgccggtgctctaatgagtgttgatgaagctctactgtgttcctttgagatacttaaatcaagtgctgatgaagcctcaagtagtcgtttaaatcttaaaaagctgcctaaagctggaaagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

317

Amino Acids

35.72

Weight (kDa)

5.22

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05580 AT3G05580 AT5G27840 AT5G27840 AT5G27840 AT5G27840
fragaria_vesca	FvH4_6g06810 FvH4_6g06810
malus_domestica	MD04G1083500.v1.1 MD04G1198300.v1.1 MD12G1210900.v1.1
prunus_persica	Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1
pyrus_communis	pycom04g17540 pycom12g19800
rosa_chinensis	RchiOBHm_Chr3g0456301
rosa_laevigata	RLG00000025314
rosa_multiflora	Rmu_sc0002607.1_g000030
rosa_roxburghii	Rroxscaffold_6G00422880
rosa_rugosa	Rorug03G0012600 Rorug03G0012600
rosa_samantha	Rh3AG072500 Rh3BG074500 Rh3CG074100 Rh3DG076000
rosa_wichuraiana	Rw3G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	587
AccII	CGCG	2 cut(s)	657, 770
AciI	CCGC	5 cut(s)	121, 243, 246, 421, 657
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	4 cut(s)	91, 285, 552, 611
AcsI	RAATTY	3 cut(s)	444, 695, 761
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	3 cut(s)	587, 809, 941
AgsI	TTSAA	3 cut(s)	224, 427, 695
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	7 cut(s)	82, 294, 680, 800, 857, 931, 941
AluI	AGCT	7 cut(s)	82, 294, 680, 800, 857, 931, 941
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	4 cut(s)	91, 285, 552, 611
AoxI	GGCC	2 cut(s)	318, 566
ApeKI	GCWGC	2 cut(s)	79, 931
ApoI	RAATTY	3 cut(s)	444, 695, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AsuHPI	GGTGA	2 cut(s)	194, 516
BanII	GRGCYC	2 cut(s)	166, 522
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	838
BbvI	GCAGC	2 cut(s)	91, 918
BccI	CCATC	3 cut(s)	7, 485, 629
BceAI	ACGGC	1 cut(s)	769
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	627
BisI	GCNGC	3 cut(s)	80, 246, 932
BlsI	GCNGC	3 cut(s)	81, 247, 933
BmsI	GCATC	2 cut(s)	364, 613
BpiI	GAAGAC	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	173, 889
BsaJI	CCNNGG	1 cut(s)	563
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	587, 809, 941
Bse118I	RCCGGY	1 cut(s)	830
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	2 cut(s)	15, 37
BseLI	CCNNNNNNNGG	3 cut(s)	587, 809, 941
BseMII	CTCAG	1 cut(s)	810
BseXI	GCAGC	2 cut(s)	91, 918
BseYI	CCCAGC	2 cut(s)	138, 639
BsgI	GTGCAG	2 cut(s)	98, 465
Bsh1236I	CGCG	2 cut(s)	657, 770
BshFI	GGCC	2 cut(s)	320, 568
BsiHKAI	GWGCWC	1 cut(s)	838
BsiSI	CCGG	2 cut(s)	388, 831
BslI	CCNNNNNNNGG	3 cut(s)	587, 809, 941
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	320, 568
Bsp1286I	GDGCHC	3 cut(s)	166, 522, 838
Bsp143I	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
Bsp68I	TCGCGA	1 cut(s)	770
BspACI	CCGC	5 cut(s)	121, 243, 246, 421, 657
BspANI	GGCC	2 cut(s)	320, 568
BspCNI	CTCAG	1 cut(s)	809
BspFNI	CGCG	2 cut(s)	657, 770
BspPI	GGATC	4 cut(s)	91, 285, 552, 611
BsrFI	RCCGGY	1 cut(s)	830
BssAI	RCCGGY	1 cut(s)	830
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
BssT1I	CCWWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	864
BstC8I	GCNNGC	2 cut(s)	121, 287
BstDEI	CTNAG	1 cut(s)	796
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	15, 37
BstFNI	CGCG	2 cut(s)	657, 770
BstKTI	GATC	6 cut(s)	99, 280, 547, 619, 655, 721
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 517, 899
BstPI	GGTNACC	1 cut(s)	233
BstUI	CGCG	2 cut(s)	657, 770
BstV1I	GCAGC	2 cut(s)	91, 918
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	320, 568
BtsCI	GGATG	2 cut(s)	15, 37
BtuMI	TCGCGA	1 cut(s)	770
Cac8I	GCNNGC	2 cut(s)	121, 287
Cfr10I	RCCGGY	1 cut(s)	830
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	3 cut(s)	191, 368, 512
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	1 cut(s)	796
DpnI	GATC	6 cut(s)	98, 279, 546, 618, 654, 720
DpnII	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
DraI	TTTAAA	1 cut(s)	918
Eco130I	CCWWGG	1 cut(s)	563
Eco24I	GRGCYC	2 cut(s)	166, 522
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	563
EcoT22I	ATGCAT	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	166, 522
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	3 cut(s)	194, 371, 515
FalI	AAGNNNNNCTT	8 cut(s)	66, 98, 195, 227, 278, 310, 336, 368
FatI	CATG	3 cut(s)	190, 367, 511
FauI	CCCGC	2 cut(s)	128, 250
FauNDI	CATATG	1 cut(s)	176
Fnu4HI	GCNGC	3 cut(s)	80, 246, 932
FokI	GGATG	2 cut(s)	22, 44
FriOI	GRGCYC	2 cut(s)	166, 522
Fsp4HI	GCNGC	3 cut(s)	80, 246, 932
FspBI	CTAG	1 cut(s)	627
GluI	GCNGC	3 cut(s)	80, 246, 932
GsaI	CCCAGC	2 cut(s)	142, 643
HaeIII	GGCC	2 cut(s)	320, 568
HapII	CCGG	2 cut(s)	388, 831
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	194, 371, 515
HincII	GTYRAC	2 cut(s)	104, 115
HindII	GTYRAC	2 cut(s)	104, 115
HindIII	AAGCTT	1 cut(s)	292
HpaII	CCGG	2 cut(s)	388, 831
HphI	GGTGA	2 cut(s)	194, 516
Hpy166II	GTNNAC	2 cut(s)	104, 115
Hpy188I	TCNGA	2 cut(s)	88, 616
Hpy188III	TCNNGA	5 cut(s)	152, 338, 581, 620, 769
Hpy8I	GTNNAC	2 cut(s)	104, 115
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	864
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	4 cut(s)	79, 377, 482, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 517, 899
HpyF3I	CTNAG	1 cut(s)	796
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	194, 371, 515
Kzo9I	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
LmnI	GCTCC	2 cut(s)	677, 805
Lsp1109I	GCAGC	2 cut(s)	91, 918
LweI	GCATC	2 cut(s)	364, 613
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	233, 784
MalI	GATC	6 cut(s)	98, 279, 546, 618, 654, 720
MboI	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
MboII	GAAGA	6 cut(s)	121, 140, 340, 383, 508, 789
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	3 cut(s)	166, 522, 838
MluCI	AATT	5 cut(s)	168, 444, 463, 695, 761
MmeI	TCCRAC	1 cut(s)	513
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	6 cut(s)	213, 384, 462, 882, 917, 924
MslI	CAYNNNNRTG	2 cut(s)	177, 372
MspI	CCGG	2 cut(s)	388, 831
MvnI	CGCG	2 cut(s)	657, 770
MwoI	GCNNNNNNNGC	3 cut(s)	291, 517, 899
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
NlaIII	CATG	3 cut(s)	194, 371, 515
NmuCI	GTSAC	1 cut(s)	784
NruI	TCGCGA	1 cut(s)	770
NsiI	ATGCAT	1 cut(s)	513
OliI	CACNNNNGTG	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	587
PkrI	GCNGC	3 cut(s)	81, 247, 933
Psp1406I	AACGTT	1 cut(s)	429
PspEI	GGTNACC	1 cut(s)	233
PspFI	CCCAGC	2 cut(s)	138, 639
PsuI	RGATCY	1 cut(s)	96
RruI	TCGCGA	1 cut(s)	770
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
RseI	CAYNNNNRTG	2 cut(s)	177, 372
SaqAI	TTAA	6 cut(s)	213, 384, 462, 882, 917, 924
SatI	GCNGC	3 cut(s)	80, 246, 932
Sau3AI	GATC	6 cut(s)	96, 277, 544, 616, 652, 718
SduI	GDGCHC	3 cut(s)	166, 522, 838
SfaNI	GCATC	2 cut(s)	364, 613
SmiMI	CAYNNNNRTG	2 cut(s)	177, 372
SmlI	CTYRAG	2 cut(s)	152, 904
SmoI	CTYRAG	2 cut(s)	152, 904
Sse9I	AATT	5 cut(s)	168, 444, 463, 695, 761
SsiI	CCGC	5 cut(s)	121, 243, 246, 421, 657
SspMI	CTAG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	1 cut(s)	864
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	160, 280
TasI	AATT	5 cut(s)	168, 444, 463, 695, 761
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	6 cut(s)	213, 384, 462, 882, 917, 924
Tru9I	TTAA	6 cut(s)	213, 384, 462, 882, 917, 924
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	2 cut(s)	79, 931
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	4 cut(s)	384, 774, 867, 912
TspGWI	ACGGA	2 cut(s)	89, 825
Van91I	CCANNNNNTGG	1 cut(s)	587
XapI	RAATTY	3 cut(s)	444, 695, 761
XspI	CTAG	1 cut(s)	627
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.