Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005223

Physical Location & Seq

Genomic Coordinates Forward (+)

5782788 .. 5786301

Gene Structure 3514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG074500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATGATGATGACAATGGAGGGGATGATGGATAAAGGTGTATTGGATGATATAATAAGGAGGTTATTGGAAGGCAAAGGAGGGAAACAAGTGCAGCTTTCAGAGGCAGAGATCCGTCAACTTTGCGTCAACGCCCGCCAAATCTTCCTTTCCCAGCCTAATCTTCTTGAGGTTCGAGCCCCAATTCACATATGCGGTGATATACATGGACAATACCAAGACCTACTTAAAGTATTTGAACAGGGGGGTTACCCTCCCGCCGCAAACTACCTATTTCTTGGAGATTATGTGGATCGAGGCAAGCAAAGCTTGGAGACAATATGTTTGCTTCTGGCCTACAAAATAAAATATCCTGAAAAAGTCTTCCTTTTGAGAGGAAACCATGAAGATGCAAAGATTAACCGGATATATGGGTTCTATGACGAGTGTAAAAGGCGGTTCAACGTTAGGCTTTGGAAAATTTTTACTGACTGCTTTAATTGTTTGCCTGTGTCTGCACTTATTGATGGGAAGATACTTTGTATGCATGGTGGGCTCTCACCAGAGTTGGAAAACTTGGATCAAATAAAGGAACTTCCAAGGCCGACTGACATTCCAGATAATGGTCTTTTATGTGATTTGCTTTGGTCTGATCCTGATGCTAGGGTTGATGGCTGGGCAGAGAGTGATCGCGGTGTTTCCTGTACTTTTGGAGCTGATAGAGTTATTGAATTTTTAGACAAGAATGACCTTGATCTCGTTTGTCGGGGTCATCAGGTAATCCTCTTTTTATTTATGAAATTGAATTACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

264

Amino Acids

30.23

Weight (kDa)

5.33

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	15 - 58	3e-20	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	61 - 253	1.7e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05580 AT3G05580 AT5G27840 AT5G27840 AT5G27840 AT5G27840
fragaria_vesca	FvH4_6g06810 FvH4_6g06810
malus_domestica	MD04G1083500.v1.1 MD04G1198300.v1.1 MD12G1210900.v1.1
prunus_persica	Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1
pyrus_communis	pycom04g17540 pycom12g19800
rosa_chinensis	RchiOBHm_Chr3g0456301
rosa_laevigata	RLG00000025314
rosa_multiflora	Rmu_sc0002607.1_g000030
rosa_roxburghii	Rroxscaffold_6G00422880
rosa_rugosa	Rorug03G0012600 Rorug03G0012600
rosa_samantha	Rh3AG072500 Rh3BG074500 Rh3CG074100 Rh3DG076000
rosa_wichuraiana	Rw3G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccII	CGCG	1 cut(s)	672
AciI	CCGC	6 cut(s)	136, 195, 258, 261, 436, 672
AclI	AACGTT	1 cut(s)	444
AclWI	GGATC	4 cut(s)	106, 300, 567, 626
AcsI	RAATTY	2 cut(s)	459, 710
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	4 cut(s)	239, 442, 710, 784
AluBI	AGCT	3 cut(s)	97, 309, 695
AluI	AGCT	3 cut(s)	97, 309, 695
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	4 cut(s)	106, 300, 567, 626
AoxI	GGCC	2 cut(s)	333, 581
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	459, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AsuHPI	GGTGA	2 cut(s)	209, 531
BanII	GRGCYC	2 cut(s)	181, 537
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	3 cut(s)	22, 500, 644
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	642
BisI	GCNGC	2 cut(s)	95, 261
BlsI	GCNGC	2 cut(s)	96, 262
BmsI	GCATC	2 cut(s)	379, 628
BpiI	GAAGAC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	30, 52
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	2 cut(s)	153, 654
BsgI	GTGCAG	2 cut(s)	113, 480
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	2 cut(s)	335, 583
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	335, 583
Bsp1286I	GDGCHC	2 cut(s)	181, 537
Bsp143I	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
BspACI	CCGC	6 cut(s)	136, 195, 258, 261, 436, 672
BspANI	GGCC	2 cut(s)	335, 583
BspFNI	CGCG	1 cut(s)	672
BspPI	GGATC	4 cut(s)	106, 300, 567, 626
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	136, 302
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	30, 52
BstFNI	CGCG	1 cut(s)	672
BstKTI	GATC	6 cut(s)	114, 295, 562, 634, 670, 736
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 532
BstPI	GGTNACC	1 cut(s)	248
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	335, 583
BtsCI	GGATG	2 cut(s)	30, 52
Cac8I	GCNNGC	2 cut(s)	136, 302
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	3 cut(s)	206, 383, 527
CviQI	GTAC	1 cut(s)	684
DpnI	GATC	6 cut(s)	113, 294, 561, 633, 669, 735
DpnII	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	2 cut(s)	181, 537
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	181, 537
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	3 cut(s)	209, 386, 530
FalI	AAGNNNNNCTT	8 cut(s)	81, 113, 210, 242, 293, 325, 351, 383
FatI	CATG	3 cut(s)	205, 382, 526
FauI	CCCGC	2 cut(s)	143, 265
FauNDI	CATATG	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	95, 261
FokI	GGATG	2 cut(s)	37, 59
FriOI	GRGCYC	2 cut(s)	181, 537
Fsp4HI	GCNGC	2 cut(s)	95, 261
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	2 cut(s)	95, 261
GsaI	CCCAGC	2 cut(s)	157, 658
HaeIII	GGCC	2 cut(s)	335, 583
HapII	CCGG	1 cut(s)	403
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	209, 386, 530
HincII	GTYRAC	2 cut(s)	119, 130
HindII	GTYRAC	2 cut(s)	119, 130
HindIII	AAGCTT	1 cut(s)	307
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	2 cut(s)	209, 531
Hpy166II	GTNNAC	2 cut(s)	119, 130
Hpy188I	TCNGA	2 cut(s)	103, 631
Hpy188III	TCNNGA	4 cut(s)	167, 353, 596, 635
Hpy8I	GTNNAC	2 cut(s)	119, 130
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	4 cut(s)	94, 392, 497, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 532
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	209, 386, 530
Kzo9I	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	379, 628
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	6 cut(s)	113, 294, 561, 633, 669, 735
MboI	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
MboII	GAAGA	5 cut(s)	136, 155, 355, 398, 523
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	181, 537
MluCI	AATT	6 cut(s)	183, 459, 478, 710, 779, 784
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	9 cut(s)	13, 54, 74, 97, 163, 264, 290, 368, 773
Mph1103I	ATGCAT	1 cut(s)	528
MseI	TTAA	3 cut(s)	228, 399, 477
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	1 cut(s)	403
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	306, 532
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
NlaIII	CATG	3 cut(s)	209, 386, 530
NsiI	ATGCAT	1 cut(s)	528
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	2 cut(s)	96, 262
Psp1406I	AACGTT	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	2 cut(s)	153, 654
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	228, 399, 477
SatI	GCNGC	2 cut(s)	95, 261
Sau3AI	GATC	6 cut(s)	111, 292, 559, 631, 667, 733
SduI	GDGCHC	2 cut(s)	181, 537
SfaNI	GCATC	2 cut(s)	379, 628
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	6 cut(s)	183, 459, 478, 710, 779, 784
SsiI	CCGC	6 cut(s)	136, 195, 258, 261, 436, 672
SspMI	CTAG	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	1 cut(s)	791
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	2 cut(s)	175, 295
TasI	AATT	6 cut(s)	183, 459, 478, 710, 779, 784
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	228, 399, 477
Tru9I	TTAA	3 cut(s)	228, 399, 477
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	399, 791
TspGWI	ACGGA	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	459, 710
XspI	CTAG	1 cut(s)	642
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.