Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005223

Physical Location & Seq

Genomic Coordinates Reverse (-)

4093213 .. 4096451

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06810.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATGATGATGACAATGGAGGGAATGATGGATAAAGGTGTGTTGGATGATATTATAAGGAGGCTATTGGAAGGCAAAGGAGGAAAACAAGTGCAGCTTTCAGAGGCAGAGATCCGTCAACTTTGCGTCAACGCCCGCCAAATCTTCCTTTCTCAGCCTAATCTTCTTGAGGTTCGAGCCCCAATTCACATATGCGGTGATATACATGGACAATACCAAGACCTACTGAAAGTATTTGAACAGGGGGGTTACCCTCCAGCTGCAAACTACCTGTTTCTCGGAGATTATGTGGATCGAGGCAAGCAAAGCTTGGAGACAATTTGTTTACTTCTGTCCTACAAAATAAAATACCCTGACAAAGTCTTCCTTTTAAGAGGAAACCATGAAGATGCAAAGATTAACCGGATATATGGGTTCTATGACGAGTGTAAAAGGCGGTTCAATGTTAGGCTTTGGAAAATTTTCACTGACTGCTTTAATTGTTTGCCTGTGTCTGCACTTATTGATGGGAAGATACTTTGTATGCATGGTGGGCTCTCACCAGAGTTGGAAAACTTGGATCAAATAAAGGAACTTCCAAGGCCGACTGACATTCCAGATAATGGTCTGTTATGTGATTTGCTTTGGTCTGATCCTGATGCTAGAATTGATGGCTGGGCAGAGAGTGATCGTGGTGTTTCCTGTACTTTTGGAGCAGATAGAGTTATTGACTTTTTAGACAAGAATGACCTTGATCTCGTCTGTCGGGGTCATCAGGTGGTTGAGGATGGTTATGAATTTTTTGCGAAACGAAGATTAGTCACTATATTCTCAGCTCCCAACTACGGAGGGGAGTTCGATAATGCCGGCGCTCTAATGAGTGTTGATGAAGCTCTACTGTGTTCGTTTGAGATACTTAAATCAAGTGCTGATGAAGCCTCAAGTAGTCGTTTAACTCTTAAAAAGCCGCCTAAAGCTGGAAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

323

Amino Acids

36.32

Weight (kDa)

5.21

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	15 - 58	4.9e-20	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	61 - 254	5.5e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05580 AT3G05580 AT5G27840 AT5G27840 AT5G27840 AT5G27840
fragaria_vesca	FvH4_6g06810 FvH4_6g06810
malus_domestica	MD04G1083500.v1.1 MD04G1198300.v1.1 MD12G1210900.v1.1
prunus_persica	Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1 Prupe.6G318800_v2.0.a1
pyrus_communis	pycom04g17540 pycom12g19800
rosa_chinensis	RchiOBHm_Chr3g0456301
rosa_laevigata	RLG00000025314
rosa_multiflora	Rmu_sc0002607.1_g000030
rosa_roxburghii	Rroxscaffold_6G00422880
rosa_rugosa	Rorug03G0012600 Rorug03G0012600
rosa_samantha	Rh3AG072500 Rh3BG074500 Rh3CG074100 Rh3DG076000
rosa_wichuraiana	Rw3G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	602
AciI	CCGC	4 cut(s)	136, 195, 436, 947
AclWI	GGATC	4 cut(s)	106, 300, 567, 626
AcsI	RAATTY	2 cut(s)	459, 776
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	3 cut(s)	602, 824, 956
AgsI	TTSAA	2 cut(s)	239, 442
AluBI	AGCT	6 cut(s)	97, 260, 309, 815, 872, 956
AluI	AGCT	6 cut(s)	97, 260, 309, 815, 872, 956
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	4 cut(s)	106, 300, 567, 626
AoxI	GGCC	1 cut(s)	581
ApeKI	GCWGC	2 cut(s)	94, 260
ApoI	RAATTY	2 cut(s)	459, 776
Asp700I	GAANNNNTTC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	851
AsuHPI	GGTGA	2 cut(s)	209, 531
BanII	GRGCYC	2 cut(s)	181, 537
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	106, 247
BccI	CCATC	4 cut(s)	22, 500, 644, 761
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	852
BglII	AGATCT	1 cut(s)	963
BisI	GCNGC	3 cut(s)	95, 261, 947
BlsI	GCNGC	3 cut(s)	96, 262, 948
BmsI	GCATC	2 cut(s)	379, 628
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	188, 904
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	602, 824, 956
Bse118I	RCCGGY	1 cut(s)	845
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	52, 772
BseLI	CCNNNNNNNGG	3 cut(s)	602, 824, 956
BseMII	CTCAG	2 cut(s)	167, 825
BseXI	GCAGC	2 cut(s)	106, 247
BseYI	CCCAGC	1 cut(s)	654
BsgI	GTGCAG	2 cut(s)	113, 480
BshFI	GGCC	1 cut(s)	583
BsiSI	CCGG	2 cut(s)	403, 846
BslI	CCNNNNNNNGG	3 cut(s)	602, 824, 956
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	583
Bsp1286I	GDGCHC	2 cut(s)	181, 537
Bsp143I	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
BspACI	CCGC	4 cut(s)	136, 195, 436, 947
BspANI	GGCC	1 cut(s)	583
BspCNI	CTCAG	2 cut(s)	166, 824
BspPI	GGATC	4 cut(s)	106, 300, 567, 626
BsrFI	RCCGGY	1 cut(s)	845
BssAI	RCCGGY	1 cut(s)	845
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	879
BstC8I	GCNNGC	3 cut(s)	136, 302, 847
BstDEI	CTNAG	2 cut(s)	153, 811
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	52, 772
BstH2I	RGCGCY	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	851
BstKTI	GATC	7 cut(s)	114, 295, 562, 634, 670, 736, 966
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 532, 914
BstPI	GGTNACC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	106, 247
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	111, 963
BstYI	RGATCY	2 cut(s)	111, 963
BsuRI	GGCC	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	52, 772
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	136, 302, 847
CfoI	GCGC	1 cut(s)	851
Cfr10I	RCCGGY	1 cut(s)	845
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	3 cut(s)	206, 383, 527
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	2 cut(s)	153, 811
DpnI	GATC	7 cut(s)	113, 294, 561, 633, 669, 735, 965
DpnII	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	2 cut(s)	181, 537
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	181, 537
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	3 cut(s)	209, 386, 530
FalI	AAGNNNNNCTT	6 cut(s)	81, 113, 293, 325, 351, 383
FatI	CATG	3 cut(s)	205, 382, 526
FauI	CCCGC	1 cut(s)	143
FauNDI	CATATG	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	95, 261, 947
FokI	GGATG	2 cut(s)	59, 779
FriOI	GRGCYC	2 cut(s)	181, 537
Fsp4HI	GCNGC	3 cut(s)	95, 261, 947
FspBI	CTAG	1 cut(s)	642
GlaI	GCGC	1 cut(s)	850
GluI	GCNGC	3 cut(s)	95, 261, 947
GsaI	CCCAGC	1 cut(s)	658
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	852
HaeIII	GGCC	1 cut(s)	583
HapII	CCGG	2 cut(s)	403, 846
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	851
Hin1II	CATG	3 cut(s)	209, 386, 530
Hin6I	GCGC	1 cut(s)	849
HinP1I	GCGC	1 cut(s)	849
HincII	GTYRAC	2 cut(s)	119, 130
HindII	GTYRAC	2 cut(s)	119, 130
HindIII	AAGCTT	1 cut(s)	307
HpaII	CCGG	2 cut(s)	403, 846
HphI	GGTGA	2 cut(s)	209, 531
Hpy166II	GTNNAC	3 cut(s)	119, 130, 326
Hpy188I	TCNGA	4 cut(s)	103, 281, 631, 968
Hpy188III	TCNNGA	3 cut(s)	167, 596, 635
Hpy8I	GTNNAC	3 cut(s)	119, 130, 326
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	879
HpyCH4V	TGCA	5 cut(s)	94, 263, 392, 497, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 532, 914
HpyF3I	CTNAG	2 cut(s)	153, 811
Hsp92II	CATG	3 cut(s)	209, 386, 530
HspAI	GCGC	1 cut(s)	849
KroI	GCCGGC	1 cut(s)	845
KroNI	GCCGGC	1 cut(s)	847
Kzo9I	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
LmnI	GCTCC	2 cut(s)	692, 820
Lsp1109I	GCAGC	2 cut(s)	106, 247
LweI	GCATC	2 cut(s)	379, 628
MaeI	CTAG	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	248, 799
MalI	GATC	7 cut(s)	113, 294, 561, 633, 669, 735, 965
MboI	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
MboII	GAAGA	6 cut(s)	136, 155, 355, 398, 523, 804
MflI	RGATCY	2 cut(s)	111, 963
MhlI	GDGCHC	2 cut(s)	181, 537
MluCI	AATT	6 cut(s)	183, 318, 459, 478, 645, 776
MmeI	TCCRAC	2 cut(s)	24, 528
Mph1103I	ATGCAT	1 cut(s)	528
MroNI	GCCGGC	1 cut(s)	845
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	6 cut(s)	371, 399, 477, 897, 932, 939
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	403, 846
MwoI	GCNNNNNNNGC	3 cut(s)	306, 532, 914
NaeI	GCCGGC	1 cut(s)	847
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
NgoMIV	GCCGGC	1 cut(s)	845
NlaIII	CATG	3 cut(s)	209, 386, 530
NmuCI	GTSAC	1 cut(s)	799
NsiI	ATGCAT	1 cut(s)	528
PdiI	GCCGGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	461
PflFI	GACNNNGTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	3 cut(s)	96, 262, 948
PsiI	TTATAA	1 cut(s)	56
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	654
PsuI	RGATCY	2 cut(s)	111, 963
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	6 cut(s)	371, 399, 477, 897, 932, 939
SatI	GCNGC	3 cut(s)	95, 261, 947
Sau3AI	GATC	7 cut(s)	111, 292, 559, 631, 667, 733, 963
SduI	GDGCHC	2 cut(s)	181, 537
SfaNI	GCATC	2 cut(s)	379, 628
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	167, 919
SmoI	CTYRAG	2 cut(s)	167, 919
Sse9I	AATT	6 cut(s)	183, 318, 459, 478, 645, 776
SsiI	CCGC	4 cut(s)	136, 195, 436, 947
SspMI	CTAG	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	1 cut(s)	879
TaqI	TCGA	3 cut(s)	175, 295, 837
TasI	AATT	6 cut(s)	183, 318, 459, 478, 645, 776
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	1 cut(s)	949
Tru1I	TTAA	6 cut(s)	371, 399, 477, 897, 932, 939
Tru9I	TTAA	6 cut(s)	371, 399, 477, 897, 932, 939
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	2 cut(s)	94, 260
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	4 cut(s)	399, 789, 882, 927
TspGWI	ACGGA	2 cut(s)	104, 840
TspRI	CASTG	1 cut(s)	472
Tth111I	GACNNNGTC	1 cut(s)	359
Van91I	CCANNNNNTGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	459, 776
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	642
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.