AT5G35540
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017470
Physical Location & Seq
Forward (+)
13722137 .. 13722993
857 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35540.1

Sequence Viewer

Length: 570 bp
ATGAAAATGTTCACCACTCCGGATGAAATGTGGGATGAGTACTTAAAGTTTGAGGATCTTCAACTCATATTTGGATGTGGCTTAGCTACTGGTGGTTCCGCAATTGGAATGGGTGAAACCACTGATGCTCGAAGAGTGGGAGATAACAAAATTGATGATGAAGTTTTTGAACTATTATCACAAGAGCTAGTTGCATCACCACAATGTGATATACCACTCTTTCCATGCACAAATCCAAAAGGACGGGTAGAAAAACTTCATCCAAGGAAGAGGTTTAGAACCTCATCTACTAGCAATATAGGTAAGCTGAAAAATGACGAAGAGGAGGATCCTATGATCGTGAATCATATTCGCTACGAAGCAGTTACCTTGATTCATTCACTTGGAATGAAAAATGTCCTCATAGACATGTCAGTAGAAGAACGTTTTGGTTTGATTAAGAATCTGCTCTACATGATTATTACTTTTGAGTTTTCTTTTATATTTATTTATCAATTGTTTCTTGTGTGGCAAGACAATGTTTTCTATTTGGTTAATGAATCTGGTTTCATACAAGTTCTACTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

189

Amino Acids

21.8

Weight (kDa)

4.85

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 115 - 147 3.1e-10 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35540
pyrus_communis pycom111g03670
rosa_laevigata RLG00000002268 RLG00000020968
rosa_multiflora Rmu_sc0006282.1_g000017 Rmu_sc0008094.1_g000004
rosa_roxburghii Rroxscaffold_6G00393390
rosa_rugosa Rorug05G0325700 Rorug05G0325800 Rorug05G0325800
rosa_samantha Rh1AG000700 Rh1DG000500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 19
AciI CCGC 1 cut(s) 99
AclI AACGTT 1 cut(s) 424
AclWI GGATC 3 cut(s) 63, 323, 336
AdeI CACNNNGTG 1 cut(s) 206
AfaI GTAC 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 62, 170
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 3 cut(s) 86, 187, 307
AluI AGCT 3 cut(s) 86, 187, 307
AlwI GGATC 3 cut(s) 63, 323, 336
Aor13HI TCCGGA 1 cut(s) 19
Asp700I GAANNNNTTC 2 cut(s) 8, 255
AsuHPI GGTGA 3 cut(s) 4, 125, 189
BamHI GGATCC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BfaI CTAG 2 cut(s) 188, 291
BlpI GCTNAGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 97, 330
BmsI GCATC 2 cut(s) 115, 203
Bpu1102I GCTNAGC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 94
BseAI TCCGGA 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 4 cut(s) 28, 40, 80, 259
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 19
Bsp143I GATC 3 cut(s) 55, 328, 336
Bsp1720I GCTNAGC 1 cut(s) 82
BspACI CCGC 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 97, 330
BspPI GGATC 3 cut(s) 63, 323, 336
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 55, 328, 336
BssT1I CCWWGG 1 cut(s) 263
Bst6I CTCTTC 3 cut(s) 127, 263, 315
BstDEI CTNAG 1 cut(s) 82
BstF5I GGATG 4 cut(s) 28, 40, 80, 259
BstKTI GATC 3 cut(s) 58, 331, 339
BstMBI GATC 3 cut(s) 55, 328, 336
BstNSI RCATGY 1 cut(s) 412
BstX2I RGATCY 2 cut(s) 55, 328
BstYI RGATCY 2 cut(s) 55, 328
BtsCI GGATG 4 cut(s) 28, 40, 80, 259
BtsIMutI CAGTG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 40
CviAII CATG 3 cut(s) 225, 409, 454
CviJI RGCY 4 cut(s) 81, 86, 187, 307
CviKI_1 RGCY 4 cut(s) 81, 86, 187, 307
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 82
DpnI GATC 3 cut(s) 57, 330, 338
DpnII GATC 3 cut(s) 55, 328, 336
DraIII CACNNNGTG 1 cut(s) 206
Eam1104I CTCTTC 3 cut(s) 127, 263, 315
EarI CTCTTC 3 cut(s) 127, 263, 315
Eco130I CCWWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 228, 412, 457
FatI CATG 3 cut(s) 224, 408, 453
FokI GGATG 4 cut(s) 35, 47, 87, 246
FspBI CTAG 2 cut(s) 188, 291
HapII CCGG 1 cut(s) 20
Hin1II CATG 3 cut(s) 228, 412, 457
HinfI GANTC 4 cut(s) 343, 373, 442, 539
HpaII CCGG 1 cut(s) 20
HphI GGTGA 3 cut(s) 4, 125, 189
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 20, 340
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 194, 228
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 3 cut(s) 228, 412, 457
Kpn2I TCCGGA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 55, 328, 336
LpnPI CCDG 3 cut(s) 33, 75, 528
LweI GCATC 2 cut(s) 115, 203
MaeI CTAG 2 cut(s) 188, 291
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 57, 330, 338
MboI GATC 3 cut(s) 55, 328, 336
MboII GAAGA 5 cut(s) 50, 144, 280, 332, 431
MfeI CAATTG 2 cut(s) 102, 494
MflI RGATCY 2 cut(s) 55, 328
MluCI AATT 3 cut(s) 102, 150, 494
MnlI CCTC 6 cut(s) 46, 264, 292, 316, 319, 410
MroI TCCGGA 1 cut(s) 19
MroXI GAANNNNTTC 2 cut(s) 8, 255
MseI TTAA 3 cut(s) 44, 438, 534
MslI CAYNNNNRTG 2 cut(s) 202, 407
MspI CCGG 1 cut(s) 20
MunI CAATTG 2 cut(s) 102, 494
NdeII GATC 3 cut(s) 55, 328, 336
NlaIII CATG 3 cut(s) 228, 412, 457
NlaIV GGNNCC 2 cut(s) 97, 330
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 8, 255
PfeI GAWTC 4 cut(s) 343, 373, 442, 539
PscI ACATGT 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 97, 330
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
PsuI RGATCY 2 cut(s) 55, 328
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 2 cut(s) 202, 407
SaqAI TTAA 3 cut(s) 44, 438, 534
Sau3AI GATC 3 cut(s) 55, 328, 336
ScaI AGTACT 1 cut(s) 41
SetI ASST 8 cut(s) 88, 189, 275, 284, 304, 309, 371, 427
SfaNI GCATC 2 cut(s) 115, 203
SmiMI CAYNNNNRTG 2 cut(s) 202, 407
Sse9I AATT 3 cut(s) 102, 150, 494
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 188, 291
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 130
TasI AATT 3 cut(s) 102, 150, 494
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 4 cut(s) 343, 373, 442, 539
Tru1I TTAA 3 cut(s) 44, 438, 534
Tru9I TTAA 3 cut(s) 44, 438, 534
TscAI CASTG 1 cut(s) 127
TspDTI ATGAA 8 cut(s) 17, 39, 174, 248, 365, 404, 538, 552
TspRI CASTG 1 cut(s) 127
XceI RCATGY 1 cut(s) 412
XmnI GAANNNNTTC 2 cut(s) 8, 255
XspI CTAG 2 cut(s) 188, 291
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.