pycom111g03670
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0017470
Physical Location & Seq
Forward (+)
2273196 .. 2273640
445 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03670.2

Sequence Viewer

Length: 297 bp
ATGATGGATCCTCAAGAATTTCGAGTGCTATATAGGATGTATCCGGATGTTTTCTTAAAGCTATGTGATGTCCTTATGGAAAAGACGCATTTGAAGGGTACAAGATTTATTTGTATTGAAGAAATGGTTGCTACATTTCTACTCACTATTAGTCAAAATTCTCGATATTGCCAAACTCGGGACACATTTCATGCACCAAATTTGATGGTCCAACCTGGATCCACGGTGCCAACTAAAATAAAAGAAAGTACAAGATTTTACCCTTATTTTAAGGCTAGATTGTGTTGGAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

99

Amino Acids

11.72

Weight (kDa)

8.98

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35540
pyrus_communis pycom111g03670
rosa_laevigata RLG00000002268 RLG00000020968
rosa_multiflora Rmu_sc0006282.1_g000017 Rmu_sc0008094.1_g000004
rosa_roxburghii Rroxscaffold_6G00393390
rosa_rugosa Rorug05G0325700 Rorug05G0325800 Rorug05G0325800
rosa_samantha Rh1AG000700 Rh1DG000500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 43
AclWI GGATC 4 cut(s) 2, 15, 213, 226
AcsI RAATTY 3 cut(s) 17, 157, 199
AfaI GTAC 2 cut(s) 100, 250
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 2 cut(s) 94, 119
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 61, 291
AluI AGCT 2 cut(s) 61, 291
AlwI GGATC 4 cut(s) 2, 15, 213, 226
Ama87I CYCGRG 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 43
ApoI RAATTY 3 cut(s) 17, 157, 199
AspS9I GGNCC 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 177
AvaII GGWCC 1 cut(s) 208
BamHI GGATCC 2 cut(s) 7, 218
BanI GGYRCC 1 cut(s) 226
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 1 cut(s) 51
BfaI CTAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 9, 220, 228
BmrFI CCNGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 42, 52
BseLI CCNNNNNNNGG 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 177
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 2 cut(s) 7, 218
BspEI TCCGGA 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 9, 220, 228
BspPI GGATC 4 cut(s) 2, 15, 213, 226
BspT107I GGYRCC 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 7, 218
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 226
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 42, 52
BstKTI GATC 2 cut(s) 10, 221
BstMBI GATC 2 cut(s) 7, 218
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 7, 218
BstYI RGATCY 2 cut(s) 7, 218
BsuI GTATCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 42, 52
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 99, 249
CviAII CATG 1 cut(s) 191
CviJI RGCY 3 cut(s) 61, 275, 291
CviKI_1 RGCY 3 cut(s) 61, 275, 291
CviQI GTAC 2 cut(s) 99, 249
DpnI GATC 2 cut(s) 9, 220
DpnII GATC 2 cut(s) 7, 218
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 194
FaiI YATR 5 cut(s) 31, 33, 64, 77, 192
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 190
FokI GGATG 2 cut(s) 49, 59
FspBI CTAG 1 cut(s) 276
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 194
HpaII CCGG 1 cut(s) 44
Hpy188III TCNNGA 4 cut(s) 14, 44, 162, 179
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 194
Hsp92II CATG 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 43
Kzo9I GATC 2 cut(s) 7, 218
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 3 cut(s) 57, 201, 228
MaeI CTAG 1 cut(s) 276
MalI GATC 2 cut(s) 9, 220
MboI GATC 2 cut(s) 7, 218
MboII GAAGA 1 cut(s) 131
MflI RGATCY 2 cut(s) 7, 218
MluCI AATT 3 cut(s) 17, 157, 199
MmeI TCCRAC 2 cut(s) 235, 266
MnlI CCTC 1 cut(s) 21
MroI TCCGGA 1 cut(s) 43
MseI TTAA 2 cut(s) 56, 270
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
NdeII GATC 2 cut(s) 7, 218
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 3 cut(s) 9, 220, 228
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 9, 220, 228
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 2 cut(s) 7, 218
RsaI GTAC 2 cut(s) 100, 250
RsaNI GTAC 2 cut(s) 99, 249
SaqAI TTAA 2 cut(s) 56, 270
Sau3AI GATC 2 cut(s) 7, 218
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 216
SetI ASST 3 cut(s) 63, 217, 293
SinI GGWCC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 3 cut(s) 17, 157, 199
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 22, 163
TasI AATT 3 cut(s) 17, 157, 199
TatI WGTACW 1 cut(s) 248
Tru1I TTAA 2 cut(s) 56, 270
Tru9I TTAA 2 cut(s) 56, 270
TspDTI ATGAA 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 3 cut(s) 17, 157, 199
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.