DDE superfamily endonuclease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G35540 |
| pyrus_communis | pycom111g03670 |
| rosa_laevigata | RLG00000002268 RLG00000020968 |
| rosa_multiflora | Rmu_sc0006282.1_g000017 Rmu_sc0008094.1_g000004 |
| rosa_roxburghii | Rroxscaffold_6G00393390 |
| rosa_rugosa | Rorug05G0325700 Rorug05G0325800 Rorug05G0325800 |
| rosa_samantha | Rh1AG000700 Rh1DG000500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 135 |
| AccB1I | GGYRCC | 1 cut(s) | 135 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AflII | CTTAAG | 1 cut(s) | 244 |
| AgsI | TTSAA | 3 cut(s) | 205, 224, 380 |
| AluBI | AGCT | 2 cut(s) | 131, 455 |
| AluI | AGCT | 2 cut(s) | 131, 455 |
| Alw21I | GWGCWC | 1 cut(s) | 457 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Asp718I | GGTACC | 1 cut(s) | 135 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 127, 160 |
| BanI | GGYRCC | 1 cut(s) | 135 |
| BanII | GRGCYC | 1 cut(s) | 457 |
| Bbv12I | GWGCWC | 1 cut(s) | 457 |
| BccI | CCATC | 1 cut(s) | 415 |
| BclI | TGATCA | 1 cut(s) | 409 |
| BfaI | CTAG | 1 cut(s) | 24 |
| BfrI | CTTAAG | 1 cut(s) | 244 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 95 |
| BmiI | GGNNCC | 1 cut(s) | 137 |
| BmsI | GCATC | 1 cut(s) | 457 |
| Bsa29I | ATCGAT | 1 cut(s) | 208 |
| BsaBI | GATNNNNATC | 1 cut(s) | 115 |
| Bse1I | ACTGG | 2 cut(s) | 112, 139 |
| Bse3DI | GCAATG | 1 cut(s) | 167 |
| Bse8I | GATNNNNATC | 1 cut(s) | 115 |
| BseCI | ATCGAT | 1 cut(s) | 208 |
| BseGI | GGATG | 2 cut(s) | 67, 187 |
| BseJI | GATNNNNATC | 1 cut(s) | 115 |
| BseMI | GCAATG | 1 cut(s) | 167 |
| BseNI | ACTGG | 2 cut(s) | 112, 139 |
| BseRI | GAGGAG | 3 cut(s) | 50, 53, 56 |
| BshNI | GGYRCC | 1 cut(s) | 135 |
| BshVI | ATCGAT | 1 cut(s) | 208 |
| BsiHKAI | GWGCWC | 1 cut(s) | 457 |
| Bsp1286I | GDGCHC | 1 cut(s) | 457 |
| Bsp143I | GATC | 2 cut(s) | 4, 409 |
| BspDI | ATCGAT | 1 cut(s) | 208 |
| BspHI | TCATGA | 1 cut(s) | 406 |
| BspLI | GGNNCC | 1 cut(s) | 137 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspT107I | GGYRCC | 1 cut(s) | 135 |
| BspTI | CTTAAG | 1 cut(s) | 244 |
| BsrDI | GCAATG | 1 cut(s) | 167 |
| BsrI | ACTGG | 2 cut(s) | 112, 139 |
| BssMI | GATC | 2 cut(s) | 4, 409 |
| Bst4CI | ACNGT | 1 cut(s) | 376 |
| Bst6I | CTCTTC | 3 cut(s) | 27, 42, 154 |
| BstAFI | CTTAAG | 1 cut(s) | 244 |
| BstF5I | GGATG | 2 cut(s) | 67, 187 |
| BstKTI | GATC | 2 cut(s) | 7, 412 |
| BstMBI | GATC | 2 cut(s) | 4, 409 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 95, 128, 461 |
| BstNSI | RCATGY | 2 cut(s) | 259, 323 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| Bsu15I | ATCGAT | 1 cut(s) | 208 |
| BsuTUI | ATCGAT | 1 cut(s) | 208 |
| BtsCI | GGATG | 2 cut(s) | 67, 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 146 |
| CciI | TCATGA | 1 cut(s) | 406 |
| ClaI | ATCGAT | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 3 cut(s) | 256, 320, 407 |
| CviJI | RGCY | 5 cut(s) | 89, 98, 131, 383, 455 |
| CviKI_1 | RGCY | 5 cut(s) | 89, 98, 131, 383, 455 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DpnI | GATC | 2 cut(s) | 6, 411 |
| DpnII | GATC | 2 cut(s) | 4, 409 |
| DraI | TTTAAA | 1 cut(s) | 270 |
| Eam1104I | CTCTTC | 3 cut(s) | 27, 42, 154 |
| EarI | CTCTTC | 3 cut(s) | 27, 42, 154 |
| Ecl136II | GAGCTC | 1 cut(s) | 455 |
| Eco24I | GRGCYC | 1 cut(s) | 457 |
| Eco53kI | GAGCTC | 1 cut(s) | 455 |
| EcoICRI | GAGCTC | 1 cut(s) | 455 |
| EcoT38I | GRGCYC | 1 cut(s) | 457 |
| FaeI | CATG | 3 cut(s) | 259, 323, 410 |
| FatI | CATG | 3 cut(s) | 255, 319, 406 |
| FbaI | TGATCA | 1 cut(s) | 409 |
| FokI | GGATG | 2 cut(s) | 74, 194 |
| FriOI | GRGCYC | 1 cut(s) | 457 |
| FspBI | CTAG | 1 cut(s) | 24 |
| Hin1II | CATG | 3 cut(s) | 259, 323, 410 |
| HinfI | GANTC | 3 cut(s) | 195, 205, 335 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy188III | TCNNGA | 2 cut(s) | 347, 407 |
| HpyCH4III | ACNGT | 1 cut(s) | 376 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 95, 128, 461 |
| Hsp92II | CATG | 3 cut(s) | 259, 323, 410 |
| KpnI | GGTACC | 1 cut(s) | 139 |
| Ksp22I | TGATCA | 1 cut(s) | 409 |
| Kzo9I | GATC | 2 cut(s) | 4, 409 |
| LpnPI | CCDG | 3 cut(s) | 93, 152, 186 |
| LweI | GCATC | 1 cut(s) | 457 |
| MaeI | CTAG | 1 cut(s) | 24 |
| MaeIII | GTNAC | 2 cut(s) | 103, 147 |
| MalI | GATC | 2 cut(s) | 6, 411 |
| MboI | GATC | 2 cut(s) | 4, 409 |
| MboII | GAAGA | 5 cut(s) | 41, 44, 59, 77, 171 |
| MfeI | CAATTG | 1 cut(s) | 413 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MhlI | GDGCHC | 1 cut(s) | 457 |
| MluCI | AATT | 1 cut(s) | 413 |
| MnlI | CCTC | 6 cut(s) | 28, 31, 34, 37, 43, 52 |
| MseI | TTAA | 4 cut(s) | 212, 245, 269, 330 |
| MspCI | CTTAAG | 1 cut(s) | 244 |
| MunI | CAATTG | 1 cut(s) | 413 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 95, 128, 461 |
| NdeII | GATC | 2 cut(s) | 4, 409 |
| NlaIII | CATG | 3 cut(s) | 259, 323, 410 |
| NlaIV | GGNNCC | 1 cut(s) | 137 |
| NspI | RCATGY | 2 cut(s) | 259, 323 |
| PagI | TCATGA | 1 cut(s) | 406 |
| PfeI | GAWTC | 3 cut(s) | 195, 205, 335 |
| Psp124BI | GAGCTC | 1 cut(s) | 457 |
| PspN4I | GGNNCC | 1 cut(s) | 137 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| SacI | GAGCTC | 1 cut(s) | 457 |
| SaqAI | TTAA | 4 cut(s) | 212, 245, 269, 330 |
| Sau3AI | GATC | 2 cut(s) | 4, 409 |
| SduI | GDGCHC | 1 cut(s) | 457 |
| SetI | ASST | 4 cut(s) | 54, 133, 301, 457 |
| SfaNI | GCATC | 1 cut(s) | 457 |
| SmlI | CTYRAG | 1 cut(s) | 244 |
| SmoI | CTYRAG | 1 cut(s) | 244 |
| Sse9I | AATT | 1 cut(s) | 413 |
| SspMI | CTAG | 1 cut(s) | 24 |
| SstI | GAGCTC | 1 cut(s) | 457 |
| TaaI | ACNGT | 1 cut(s) | 376 |
| TaqI | TCGA | 2 cut(s) | 208, 451 |
| TasI | AATT | 1 cut(s) | 413 |
| TfiI | GAWTC | 3 cut(s) | 195, 205, 335 |
| Tru1I | TTAA | 4 cut(s) | 212, 245, 269, 330 |
| Tru9I | TTAA | 4 cut(s) | 212, 245, 269, 330 |
| TscAI | CASTG | 1 cut(s) | 146 |
| TspDTI | ATGAA | 4 cut(s) | 78, 198, 251, 395 |
| TspGWI | ACGGA | 1 cut(s) | 372 |
| TspRI | CASTG | 1 cut(s) | 146 |
| Vha464I | CTTAAG | 1 cut(s) | 244 |
| XceI | RCATGY | 2 cut(s) | 259, 323 |
| XspI | CTAG | 1 cut(s) | 24 |