Rmu_sc0008094.1_g000004
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008094.1
OG0017470
Physical Location & Seq
Forward (+)
9131 .. 9622
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008094.1_g000004.1.cds

Sequence Viewer

Length: 492 bp
atggatctttgtcgtaagtgtgctagagaagaagaggaggaggaggaagaggtggtggaggatgaagaaaggatagggaaaatgatagcctttttggctgttgtaactggatttacatcagcaatagtagcttggtaccagtgtaagttactcacaagaagagaaccattgcctgatagggatgaacatagacgattctatttgaatcgattaagtggatttgaagttgagtgtatgaaaaacttaagagttagcatgtatggatttttaaaactttgccaagtcttatatgacaaaggtggattacaaagaacaaggcatgtatctattaaagaatccatatttcgtgaaatcaacggagtggagattagaactgttgaagccactaatgagtggattgtatttcatgatcaattggtgatggatatgtttattgactatcaaaggcatcgagctcaacaagcgcagcaagatcgttctacaaccttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

163

Amino Acids

19.43

Weight (kDa)

5.49

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35540
pyrus_communis pycom111g03670
rosa_laevigata RLG00000002268 RLG00000020968
rosa_multiflora Rmu_sc0006282.1_g000017 Rmu_sc0008094.1_g000004
rosa_roxburghii Rroxscaffold_6G00393390
rosa_rugosa Rorug05G0325700 Rorug05G0325800 Rorug05G0325800
rosa_samantha Rh1AG000700 Rh1DG000500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 135
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 137
AflII CTTAAG 1 cut(s) 244
AgsI TTSAA 3 cut(s) 205, 224, 380
AluBI AGCT 2 cut(s) 131, 455
AluI AGCT 2 cut(s) 131, 455
Alw21I GWGCWC 1 cut(s) 457
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 466
Asp718I GGTACC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 466
AsuHPI GGTGA 1 cut(s) 430
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BanI GGYRCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 478
BccI CCATC 1 cut(s) 415
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BclI TGATCA 1 cut(s) 409
BfaI CTAG 1 cut(s) 24
BfrI CTTAAG 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 137
BmsI GCATC 1 cut(s) 457
Bsa29I ATCGAT 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 112, 139
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 115
BseCI ATCGAT 1 cut(s) 208
BseGI GGATG 2 cut(s) 67, 187
BseJI GATNNNNATC 1 cut(s) 115
BseMI GCAATG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 112, 139
BseRI GAGGAG 3 cut(s) 50, 53, 56
BseXI GCAGC 1 cut(s) 478
BshNI GGYRCC 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 3 cut(s) 4, 409, 472
BspDI ATCGAT 1 cut(s) 208
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 2 cut(s) 112, 139
BssMI GATC 3 cut(s) 4, 409, 472
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 3 cut(s) 27, 42, 154
BstAFI CTTAAG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 67, 187
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 3 cut(s) 7, 412, 475
BstMBI GATC 3 cut(s) 4, 409, 472
BstMWI GCNNNNNNNGC 3 cut(s) 95, 128, 461
BstNSI RCATGY 2 cut(s) 259, 323
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 208
BtsCI GGATG 2 cut(s) 67, 187
BtsIMutI CAGTG 1 cut(s) 146
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 466
ClaI ATCGAT 1 cut(s) 208
Csp6I GTAC 1 cut(s) 136
CviAII CATG 3 cut(s) 256, 320, 407
CviJI RGCY 5 cut(s) 89, 98, 131, 383, 455
CviKI_1 RGCY 5 cut(s) 89, 98, 131, 383, 455
CviQI GTAC 1 cut(s) 136
DpnI GATC 3 cut(s) 6, 411, 474
DpnII GATC 3 cut(s) 4, 409, 472
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 3 cut(s) 27, 42, 154
EarI CTCTTC 3 cut(s) 27, 42, 154
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 457
FaeI CATG 3 cut(s) 259, 323, 410
FatI CATG 3 cut(s) 255, 319, 406
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 2 cut(s) 74, 194
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 467
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 465
GluI GCNGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 466
Hin1II CATG 3 cut(s) 259, 323, 410
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 3 cut(s) 195, 205, 335
HphI GGTGA 1 cut(s) 430
Hpy188III TCNNGA 2 cut(s) 347, 407
HpyCH4III ACNGT 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 128, 461
Hsp92II CATG 3 cut(s) 259, 323, 410
HspAI GCGC 1 cut(s) 464
KpnI GGTACC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 4, 409, 472
LpnPI CCDG 3 cut(s) 93, 152, 186
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 103, 147
MalI GATC 3 cut(s) 6, 411, 474
MboI GATC 3 cut(s) 4, 409, 472
MboII GAAGA 5 cut(s) 41, 44, 59, 77, 171
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 1 cut(s) 413
MnlI CCTC 6 cut(s) 28, 31, 34, 37, 43, 52
MseI TTAA 5 cut(s) 212, 245, 269, 330, 490
MspCI CTTAAG 1 cut(s) 244
MunI CAATTG 1 cut(s) 413
MwoI GCNNNNNNNGC 3 cut(s) 95, 128, 461
NdeII GATC 3 cut(s) 4, 409, 472
NlaIII CATG 3 cut(s) 259, 323, 410
NlaIV GGNNCC 1 cut(s) 137
NspI RCATGY 2 cut(s) 259, 323
PagI TCATGA 1 cut(s) 406
PfeI GAWTC 3 cut(s) 195, 205, 335
PkrI GCNGC 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 5 cut(s) 212, 245, 269, 330, 490
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 3 cut(s) 4, 409, 472
SduI GDGCHC 1 cut(s) 457
SetI ASST 5 cut(s) 54, 133, 301, 457, 488
SfaNI GCATC 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 413
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 457
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 2 cut(s) 208, 451
TasI AATT 1 cut(s) 413
TfiI GAWTC 3 cut(s) 195, 205, 335
Tru1I TTAA 5 cut(s) 212, 245, 269, 330, 490
Tru9I TTAA 5 cut(s) 212, 245, 269, 330, 490
TscAI CASTG 1 cut(s) 146
TseI GCWGC 1 cut(s) 466
TspDTI ATGAA 4 cut(s) 78, 198, 251, 395
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 244
XceI RCATGY 2 cut(s) 259, 323
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.