Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

13824424 .. 13826444

Gene Structure 2021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G35620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGACCGATGATGTGAACGAGCCTCTCCCGGCGGCGGCGGAATTACCGGCGACAGAGGCGGAGAAACAACCACACAAGCTCGAAAGAAAGTGGAGTTTCTGGTTCGATAACCAATCAAAGAAAGGCGCCGCCTGGGGAGCTTCTCTTCGTAAAGCCTATACTTTCGACACCGTCGAAGATTTTTGGGGATTGCACGAGACTATATTTCAGACTAGCAAATTGACAGCGAATGCTGAAATTCACTTGTTCAAAGCTGGTGTTGAGCCAAAGTGGGAAGATCCAGAGTGTGCTAATGGAGGAAAGTGGACTTGGGTTGTTACTGCTAATAGGAAGGAAGCTTTAGACAAAGGCTGGCTTGAAACTTTGATGGCTTTGATTGGAGAGCAATTTGATGAAGCAGATGAGATTTGTGGTGTGGTTGCTAGTGTCCGTCCACAGTCGAAGCAAGACAAGCTCTCCTTGTGGACTAGGACGAAGTCTAATGAAGCTGTTCTGATGGGTATTGGGAAGAAGTGGAAGGAGATACTTGATGTCACCGACAAGATAACTTTCAATAACCATGATGATTCCAGAAGAAGCCGGTTCACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

198

Amino Acids

22.51

Weight (kDa)

5.49

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	27 - 183	1.3e-51	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AciI	CCGC	5 cut(s)	35, 38, 41, 62, 132
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	253, 362, 556
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AluBI	AGCT	6 cut(s)	82, 143, 257, 341, 457, 491
AluI	AGCT	6 cut(s)	82, 143, 257, 341, 457, 491
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	128
BauI	CACGAG	1 cut(s)	197
BccI	CCATC	2 cut(s)	364, 493
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	3 cut(s)	216, 426, 471
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	3 cut(s)	36, 39, 132
BlsI	GCNGC	3 cut(s)	37, 40, 133
Bme1390I	CCNGG	2 cut(s)	32, 136
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	2 cut(s)	32, 136
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	2 cut(s)	49, 582
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	32, 50, 583
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	5 cut(s)	35, 38, 41, 62, 132
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	128
BsrFI	RCCGGY	2 cut(s)	49, 582
BssAI	RCCGGY	2 cut(s)	49, 582
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	3 cut(s)	175, 441, 592
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	280
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 140, 454
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	30, 134
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	2 cut(s)	49, 582
CviAII	CATG	1 cut(s)	563
DinI	GGCGCC	1 cut(s)	130
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	56, 77
EcoRII	CCWGG	1 cut(s)	134
EgeI	GGCGCC	1 cut(s)	130
EheI	GGCGCC	1 cut(s)	130
FaeI	CATG	1 cut(s)	566
FaiI	YATR	3 cut(s)	162, 206, 564
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 446, 478
FatI	CATG	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	36, 39, 132
Fsp4HI	GCNGC	3 cut(s)	36, 39, 132
FspBI	CTAG	3 cut(s)	216, 426, 471
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	36, 39, 132
HaeII	RGCGCY	1 cut(s)	132
HapII	CCGG	3 cut(s)	32, 50, 583
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	3 cut(s)	32, 50, 583
HphI	GGTGA	1 cut(s)	529
Hpy166II	GTNNAC	5 cut(s)	19, 309, 437, 468, 588
Hpy188I	TCNGA	3 cut(s)	213, 498, 596
Hpy188III	TCNNGA	2 cut(s)	284, 573
Hpy8I	GTNNAC	5 cut(s)	19, 309, 437, 468, 588
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	328, 514
HpyCH4III	ACNGT	3 cut(s)	175, 441, 592
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 140, 454
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	1 cut(s)	129
KasI	GGCGCC	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	9 cut(s)	45, 63, 88, 121, 148, 243, 297, 340, 586
MaeI	CTAG	3 cut(s)	216, 426, 471
MaeIII	GTNAC	2 cut(s)	319, 535
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	5 cut(s)	140, 191, 290, 523, 588
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	4 cut(s)	44, 221, 240, 389
Mly113I	GGCGCC	1 cut(s)	129
MnlI	CCTC	3 cut(s)	36, 52, 293
MroXI	GAANNNNTTC	1 cut(s)	492
MspI	CCGG	3 cut(s)	32, 50, 583
MspR9I	CCNGG	2 cut(s)	32, 136
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	59, 140, 454
NarI	GGCGCC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	569
PflFI	GACNNNGTC	2 cut(s)	173, 478
PkrI	GCNGC	3 cut(s)	37, 40, 133
PluTI	GGCGCC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	280
PsyI	GACNNNGTC	2 cut(s)	173, 478
SatI	GCNGC	3 cut(s)	36, 39, 132
Sau3AI	GATC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	32, 136
SetI	ASST	6 cut(s)	84, 145, 259, 343, 459, 493
SfoI	GGCGCC	1 cut(s)	130
Sse9I	AATT	4 cut(s)	44, 221, 240, 389
SsiI	CCGC	5 cut(s)	35, 38, 41, 62, 132
SspDI	GGCGCC	1 cut(s)	128
SspMI	CTAG	3 cut(s)	216, 426, 471
StyD4I	CCNGG	2 cut(s)	30, 134
TaaI	ACNGT	3 cut(s)	175, 441, 592
TaqI	TCGA	5 cut(s)	84, 108, 168, 177, 443
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	44, 221, 240, 389
TauI	GCSGC	3 cut(s)	38, 41, 134
TfiI	GAWTC	1 cut(s)	569
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	411, 501
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	2 cut(s)	173, 478
XapI	RAATTY	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	3 cut(s)	216, 426, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.