Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Forward (+)

55921624 .. 55924291

Gene Structure 2668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009651

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGACGGAAGTAGCAGCACCGGCACCGCCGTTATCCGACGTGGAGGACAACACCACCGCCGCGGCGGCAGCGGAGACGAAGAGCAACGGGCCCCACAAGCTCGAGAGAAAGTGGACCTTCTGGTTCGACAACCAATCTAAGCCCAAGCAAAGTGGCGCTGCTTGGGGCTCCTCTCTCAAAAAAGCCTACACCTTTGAAACCGTGCAGGAGTTTTGGTGTTTGTATGATCAGATATTCAAGCCGAGCAAGTTTCCAGCAAATGCTGAGTTCCACTTGTTCAGGGCTGGGGTTGAACCGAAATGGGAGGATCCTGAATGTGCTAATGGAGGGAAGTGGACTGTCACCAGCAGCAGGAAGGCCAACCTTGATTCCATGTGGCTAGAAACTTTGATGGCACTGATTGGAGAGCAATTTGATGAGGGTGATGAGATTTGTGGAGTGGTAGCAAGTGTGCGCCAGAGGCAAGACAAACTTGCATTGTGGACTAGGAATGCTGCAAACGAGGCTGCCCAGATGAGCATTGGGAGGAAGTGGAAGGAGATAATCGATGTTACTGATAAGATAACTTACAGCTTCCATGATGATAGTAAAAGGGAAAGATCAGCGAAGCCTCGATACAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

210

Amino Acids

23.64

Weight (kDa)

5.99

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	34 - 190	4.1e-56	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	65
AciI	CCGC	6 cut(s)	29, 60, 63, 65, 68, 74
AclWI	GGATC	2 cut(s)	305, 318
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	200, 241, 296
AjiI	CACGTC	1 cut(s)	43
AluBI	AGCT	2 cut(s)	103, 576
AluI	AGCT	2 cut(s)	103, 576
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	305, 318
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	92, 360
ApaI	GGGCCC	1 cut(s)	96
ApeKI	GCWGC	6 cut(s)	17, 71, 161, 351, 497, 509
AspLEI	GCGC	2 cut(s)	161, 459
AspS9I	GGNCC	3 cut(s)	92, 93, 117
AsuHPI	GGTGA	2 cut(s)	337, 437
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	96, 173
BarI	GAAGNNNNNNTAC	1 cut(s)	602
BbvI	GCAGC	6 cut(s)	29, 83, 148, 363, 484, 496
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	383, 489
BfoI	RGCGCY	1 cut(s)	162
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	9 cut(s)	18, 63, 66, 69, 72, 162, 352, 498, 510
BlsI	GCNGC	9 cut(s)	19, 64, 67, 70, 73, 163, 353, 499, 511
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	92, 93, 117
BmiI	GGNNCC	5 cut(s)	27, 94, 95, 172, 312
Bsa29I	ATCGAT	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	29, 83, 148, 363, 484, 496
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	94, 362
BshNI	GGYRCC	1 cut(s)	25
BshVI	ATCGAT	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	94, 362
BsoBI	CYCGRG	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	96, 173
Bsp143I	GATC	3 cut(s)	229, 310, 602
BspACI	CCGC	6 cut(s)	29, 60, 63, 65, 68, 74
BspANI	GGCC	2 cut(s)	94, 362
BspCNI	CTCAG	1 cut(s)	259
BspDI	ATCGAT	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	5 cut(s)	27, 94, 95, 172, 312
BspPI	GGATC	2 cut(s)	305, 318
BspQI	GCTCTTC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	229, 310, 602
Bst4CI	ACNGT	2 cut(s)	205, 343
Bst6I	CTCTTC	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	141, 267
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	161, 459
BstKTI	GATC	3 cut(s)	232, 313, 605
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	229, 310, 602
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 100, 463, 506
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	6 cut(s)	29, 83, 148, 363, 484, 496
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	94, 362
BsuTUI	ATCGAT	1 cut(s)	549
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	398
CfoI	GCGC	2 cut(s)	161, 459
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	3 cut(s)	92, 93, 117
Cfr42I	CCGCGG	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	549
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	2 cut(s)	376, 581
DdeI	CTNAG	2 cut(s)	141, 267
DpnI	GATC	3 cut(s)	231, 312, 604
DpnII	GATC	3 cut(s)	229, 310, 602
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	96, 173
Eco47I	GGWCC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	93
EcoT38I	GRGCYC	2 cut(s)	96, 173
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	2 cut(s)	379, 584
FaiI	YATR	3 cut(s)	228, 377, 582
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 459, 491
FatI	CATG	2 cut(s)	375, 580
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	9 cut(s)	18, 63, 66, 69, 72, 162, 352, 498, 510
FriOI	GRGCYC	2 cut(s)	96, 173
Fsp4HI	GCNGC	9 cut(s)	18, 63, 66, 69, 72, 162, 352, 498, 510
FspBI	CTAG	2 cut(s)	383, 489
GlaI	GCGC	2 cut(s)	160, 458
GluI	GCNGC	9 cut(s)	18, 63, 66, 69, 72, 162, 352, 498, 510
GsaI	CCCAGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	94, 362
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	161, 459
Hin1II	CATG	2 cut(s)	379, 584
Hin6I	GCGC	2 cut(s)	159, 457
HinP1I	GCGC	2 cut(s)	159, 457
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	337, 437
Hpy166II	GTNNAC	3 cut(s)	117, 339, 486
Hpy188I	TCNGA	2 cut(s)	40, 234
Hpy188III	TCNNGA	2 cut(s)	106, 314
Hpy8I	GTNNAC	3 cut(s)	117, 339, 486
Hpy99I	CGWCG	2 cut(s)	10, 44
HpyAV	CCTTC	3 cut(s)	130, 352, 532
HpyCH4III	ACNGT	2 cut(s)	205, 343
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	208, 479, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 100, 463, 506
HpyF3I	CTNAG	2 cut(s)	141, 267
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	379, 584
HspAI	GCGC	2 cut(s)	159, 457
Ksp22I	TGATCA	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	229, 310, 602
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	6 cut(s)	29, 83, 148, 363, 484, 496
MaeI	CTAG	2 cut(s)	383, 489
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	343, 553
MalI	GATC	3 cut(s)	231, 312, 604
MboI	GATC	3 cut(s)	229, 310, 602
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	96, 173
MluCI	AATT	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	40, 184, 301, 323, 415, 456, 499, 522, 624
MspA1I	CMGCKG	2 cut(s)	65, 74
MspI	CCGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	499
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 100, 463, 506
NdeII	GATC	3 cut(s)	229, 310, 602
NlaIII	CATG	2 cut(s)	379, 584
NlaIV	GGNNCC	5 cut(s)	27, 94, 95, 172, 312
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	9 cut(s)	19, 64, 67, 70, 73, 163, 353, 499, 511
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	5 cut(s)	27, 94, 95, 172, 312
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	3 cut(s)	92, 93, 117
PsuI	RGATCY	1 cut(s)	310
SacII	CCGCGG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	77
SatI	GCNGC	9 cut(s)	18, 63, 66, 69, 72, 162, 352, 498, 510
Sau3AI	GATC	3 cut(s)	229, 310, 602
Sau96I	GGNCC	3 cut(s)	92, 93, 117
SduI	GDGCHC	2 cut(s)	96, 173
SetI	ASST	6 cut(s)	45, 105, 122, 197, 369, 578
Sfr274I	CTCGAG	1 cut(s)	104
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	6 cut(s)	29, 60, 63, 65, 68, 74
SspMI	CTAG	2 cut(s)	383, 489
TaaI	ACNGT	2 cut(s)	205, 343
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	105, 129, 549, 616
TasI	AATT	1 cut(s)	413
TauI	GCSGC	3 cut(s)	65, 68, 71
TfiI	GAWTC	1 cut(s)	371
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	6 cut(s)	17, 71, 161, 351, 497, 509
Tsp45I	GTSAC	1 cut(s)	343
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	2 cut(s)	383, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.