Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

11902298 .. 11905700

Gene Structure 3403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCGACGGAAGTAGCAGCACCGGCACCGCCGTTATCCGACGTGGAGGACAACACCACCGCCGCGGCGGCGGCAGCAGAGACGAAGAGCAGCGGGCCCCACAAGCTCGAGAGAAAGTGGACCTTCTGGTTCGACAACCAATCTAAGCCCAAGCAAAGTGGCGCTGCTTGGGGCTCCTCTCTCAAAAAAGCCTACACCTTTGACACCGTCCAGGAGTTTTGGTGTTTGTATGATCAGATATTCAAGCCGAGCAAGTTTCCAGCAAATGCTGAGTTCCACTTGTTCAGGGCTGGGGTTGAACCGAAATGGGAGGATCCTGAATGTGCTAACGGAGGGAAGTGGACTGTCACCAGCAGCAGGAAGGCCAACCTTGATACCATGTGGCTAGAAACTTTGATGGCACTGATTGGAGAGCAATTTGATGAGGGTGATGAGATCTGTGGGGTGGTAGCAAGTGTTCGCCAGAGGCAAGACAAACTTGCATTGTGGACTAGGAATGCTGCAAACGAGGCTGCCCAGGTAAAACAATTTACACTTCCATTTGGATTGCCTCAAACAATTTTTCCATCTGTTGTGCTGTCAAATGGTGACATTGTTATACCTTGGCACATTAAAAATAGGTGTCGACCTTTTTTATTTGGTTTTAGACTTGCTTCTGGGTCCTCATGGTTGTTGTTTGGATATTTCATTAAAGGAAACATGGGTTCCCTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

238

Amino Acids

26.53

Weight (kDa)

6.83

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	35 - 173	2.7e-51	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	1 cut(s)	65
AciI	CCGC	7 cut(s)	29, 60, 63, 65, 68, 71, 93
AclWI	GGATC	2 cut(s)	308, 321
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	244, 299
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	210, 516
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	308, 321
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	95, 363
ApaI	GGGCCC	1 cut(s)	99
ApeKI	GCWGC	7 cut(s)	17, 74, 90, 164, 354, 500, 512
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	4 cut(s)	95, 96, 120, 660
AsuHPI	GGTGA	3 cut(s)	340, 440, 599
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	120, 660
BaeGI	GKGCMC	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	99, 176
BbvI	GCAGC	7 cut(s)	29, 86, 102, 151, 366, 487, 499
BccI	CCATC	2 cut(s)	391, 574
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	212, 518
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	386, 492
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	212, 518
Bme18I	GGWCC	2 cut(s)	120, 660
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	95, 96, 120, 660
BmiI	GGNNCC	7 cut(s)	27, 97, 98, 175, 315, 661, 706
BmrFI	CCNGG	2 cut(s)	212, 518
BsaJI	CCNNGG	3 cut(s)	63, 516, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	212, 518
BseDI	CCNNGG	3 cut(s)	63, 516, 602
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	7 cut(s)	29, 86, 102, 151, 366, 487, 499
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	97, 365
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	97, 365
BsoBI	CYCGRG	1 cut(s)	107
Bsp120I	GGGCCC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	99, 176
Bsp143I	GATC	3 cut(s)	232, 313, 435
BspACI	CCGC	7 cut(s)	29, 60, 63, 65, 68, 71, 93
BspANI	GGCC	2 cut(s)	97, 365
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	7 cut(s)	27, 97, 98, 175, 315, 661, 706
BspPI	GGATC	2 cut(s)	308, 321
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	63, 516, 602
BssMI	GATC	3 cut(s)	232, 313, 435
BssT1I	CCWWGG	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	212, 518
Bst4CI	ACNGT	2 cut(s)	208, 346
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	144, 270
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	235, 316, 438
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	232, 313, 435
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 74, 103, 509
BstNI	CCWGG	2 cut(s)	212, 518
BstSCI	CCNGG	2 cut(s)	210, 516
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	7 cut(s)	29, 86, 102, 151, 366, 487, 499
BstX2I	RGATCY	2 cut(s)	313, 435
BstYI	RGATCY	2 cut(s)	313, 435
BsuRI	GGCC	2 cut(s)	97, 365
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	4 cut(s)	95, 96, 120, 660
Cfr42I	CCGCGG	1 cut(s)	66
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	3 cut(s)	379, 666, 700
DdeI	CTNAG	2 cut(s)	144, 270
DpnI	GATC	3 cut(s)	234, 315, 437
DpnII	GATC	3 cut(s)	232, 313, 435
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	602
Eco24I	GRGCYC	2 cut(s)	99, 176
Eco47I	GGWCC	2 cut(s)	120, 660
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	2 cut(s)	96, 660
EcoRII	CCWGG	2 cut(s)	210, 516
EcoT14I	CCWWGG	1 cut(s)	602
EcoT38I	GRGCYC	2 cut(s)	99, 176
ErhI	CCWWGG	1 cut(s)	602
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	382, 669, 703
FaiI	YATR	5 cut(s)	231, 380, 599, 667, 701
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 462, 494
FatI	CATG	3 cut(s)	378, 665, 699
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	625
FriOI	GRGCYC	2 cut(s)	99, 176
FspBI	CTAG	2 cut(s)	386, 492
GlaI	GCGC	1 cut(s)	163
GsaI	CCCAGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	97, 365
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	382, 669, 703
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	3 cut(s)	340, 440, 599
Hpy166II	GTNNAC	4 cut(s)	120, 342, 489, 626
Hpy188I	TCNGA	2 cut(s)	40, 237
Hpy188III	TCNNGA	2 cut(s)	109, 317
Hpy8I	GTNNAC	4 cut(s)	120, 342, 489, 626
Hpy99I	CGWCG	2 cut(s)	10, 44
HpyAV	CCTTC	2 cut(s)	133, 355
HpyCH4III	ACNGT	2 cut(s)	208, 346
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	482, 503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 74, 103, 509
HpyF3I	CTNAG	2 cut(s)	144, 270
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	382, 669, 703
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	232
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	232, 313, 435
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	7 cut(s)	29, 86, 102, 151, 366, 487, 499
MaeI	CTAG	2 cut(s)	386, 492
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	346, 587
MalI	GATC	3 cut(s)	234, 315, 437
MboI	GATC	3 cut(s)	232, 313, 435
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	2 cut(s)	313, 435
MhlI	GDGCHC	2 cut(s)	99, 176
MluCI	AATT	3 cut(s)	416, 527, 558
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	40, 187, 304, 326, 418, 459, 502, 561, 673
MseI	TTAA	2 cut(s)	612, 690
MspA1I	CMGCKG	2 cut(s)	65, 93
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	212, 518
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	2 cut(s)	212, 518
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 74, 103, 509
NdeII	GATC	3 cut(s)	232, 313, 435
NlaIII	CATG	3 cut(s)	382, 669, 703
NlaIV	GGNNCC	7 cut(s)	27, 97, 98, 175, 315, 661, 706
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	2 cut(s)	346, 587
PaeR7I	CTCGAG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	502
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	210
PpuMI	RGGWCCY	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	2 cut(s)	210, 516
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	210, 516
PspN4I	GGNNCC	7 cut(s)	27, 97, 98, 175, 315, 661, 706
PspOMI	GGGCCC	1 cut(s)	95
PspPI	GGNCC	4 cut(s)	95, 96, 120, 660
PspPPI	RGGWCCY	1 cut(s)	660
PsrI	GAACNNNNNNTAC	2 cut(s)	441, 473
PsuI	RGATCY	2 cut(s)	313, 435
PsyI	GACNNNGTC	1 cut(s)	206
SacII	CCGCGG	1 cut(s)	66
SalI	GTCGAC	1 cut(s)	624
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	612, 690
Sau3AI	GATC	3 cut(s)	232, 313, 435
Sau96I	GGNCC	4 cut(s)	95, 96, 120, 660
ScrFI	CCNGG	2 cut(s)	212, 518
SduI	GDGCHC	2 cut(s)	99, 176
SetI	ASST	9 cut(s)	45, 108, 125, 200, 372, 522, 604, 623, 631
Sfr274I	CTCGAG	1 cut(s)	107
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SinI	GGWCC	2 cut(s)	120, 660
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	416, 527, 558
SsiI	CCGC	7 cut(s)	29, 60, 63, 65, 68, 71, 93
SspMI	CTAG	2 cut(s)	386, 492
StyD4I	CCNGG	2 cut(s)	210, 516
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	208, 346
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	108, 132, 625
TasI	AATT	3 cut(s)	416, 527, 558
TauI	GCSGC	4 cut(s)	65, 68, 71, 74
Tru1I	TTAA	2 cut(s)	612, 690
Tru9I	TTAA	2 cut(s)	612, 690
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	346, 587
TseI	GCWGC	7 cut(s)	17, 74, 90, 164, 354, 500, 512
Tsp45I	GTSAC	2 cut(s)	346, 587
TspDTI	ATGAA	1 cut(s)	676
TspGWI	ACGGA	2 cut(s)	23, 345
TspRI	CASTG	1 cut(s)	408
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	120, 660
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	625
XspI	CTAG	2 cut(s)	386, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.