Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

22715018 .. 22717452

Gene Structure 2435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1225300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGACAGAGGTAGCAGCAGCGGTGCCGCGACCAGAGGTGGACACACAGGAGAATATTGCGGCTGAGGCGGTGGCCTCTGATACCAAGATACAGGCAAGCAGCGGCCCCCAGAAGCTGGAGAGAAAGTGGACCTTTTGGTTCGATAACCAATCCAAGCCCAAGCAAGGTGCTGCGTGGGGCTCCTCGCTCCGCAAAGCCTACACCTTCGAAACCGTCCAGGAGTTTTGGTGTCTGTATGATCACGTATTCAAGCCCAGCAAGTTGACGGTTCATGCAGACTTCCACTTGTTCCGGGCTGGGGTTGAACCAAAGTGGGAGGATCCTGAGTGTGCTAATGGAGGGAAGTGGACTGTCACCAGCAGCAGGAAGGCTAACCTTGATACCATGTGGCTAGAGACTTTGATGGCACTGATTGGAGAGCAATTTGATGAGGCTGATGAGATATGCGGAGTGGTAGCAAGTGTGCGCCAGAGGCAGGACAAACTTGCACTATGGACTAGGAATGCTGCAAACGAGGCTGCACAGATGAGCATTGGGAGAAAGTGGAAGGAGGTAATCGATGTTACCGATAAGATCACCTACAGCTTCCATGACGATTCTAAAAGGGAAAGATCAGCAAAGCCTCGATACTATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

214

Amino Acids

24.27

Weight (kDa)

6.13

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	39 - 194	2.9e-57	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccII	CGCG	1 cut(s)	31
AciI	CCGC	7 cut(s)	23, 29, 62, 71, 105, 193, 450
AclWI	GGATC	2 cut(s)	317, 330
AfiI	CCNNNNNNNGG	5 cut(s)	118, 167, 301, 366, 478
AgsI	TTSAA	2 cut(s)	253, 308
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	2 cut(s)	118, 588
AluI	AGCT	2 cut(s)	118, 588
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	317, 330
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	75, 106
ApeKI	GCWGC	7 cut(s)	17, 20, 102, 173, 363, 509, 521
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	107, 132
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	349, 571
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	7 cut(s)	29, 32, 114, 160, 375, 496, 508
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	2 cut(s)	395, 501
BfmI	CTRYAG	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	221, 296
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	107, 132
BmiI	GGNNCC	4 cut(s)	27, 109, 184, 324
BmrFI	CCNGG	2 cut(s)	221, 296
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	247
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 215, 245
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 167, 301, 366, 478
BseBI	CCWGG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	561
BseLI	CCNNNNNNNGG	5 cut(s)	118, 167, 301, 366, 478
BseMII	CTCAG	2 cut(s)	57, 318
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	7 cut(s)	29, 32, 114, 160, 375, 496, 508
BseYI	CCCAGC	2 cut(s)	257, 299
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	77, 108
BshNI	GGYRCC	1 cut(s)	25
BshVI	ATCGAT	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	5 cut(s)	118, 167, 301, 366, 478
BsmAI	GTCTC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	77, 108
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	241, 322, 576, 614
BspACI	CCGC	7 cut(s)	23, 29, 62, 71, 105, 193, 450
BspANI	GGCC	2 cut(s)	77, 108
BspCNI	CTCAG	2 cut(s)	58, 319
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	4 cut(s)	27, 109, 184, 324
BspPI	GGATC	2 cut(s)	317, 330
BspT104I	TTCGAA	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	25
BssMI	GATC	4 cut(s)	241, 322, 576, 614
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	217, 271, 355
BstBAI	YACGTR	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	66, 327
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	4 cut(s)	244, 325, 579, 617
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	4 cut(s)	241, 322, 576, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 475, 518
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	219, 294
BstSFI	CTRYAG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	7 cut(s)	29, 32, 114, 160, 375, 496, 508
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	77, 108
BsuTUI	ATCGAT	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	107, 132
ClaI	ATCGAT	1 cut(s)	561
CviAII	CATG	3 cut(s)	275, 388, 593
DdeI	CTNAG	2 cut(s)	66, 327
DpnI	GATC	4 cut(s)	243, 324, 578, 616
DpnII	GATC	4 cut(s)	241, 322, 576, 614
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	3 cut(s)	278, 391, 596
FaiI	YATR	7 cut(s)	240, 276, 389, 448, 496, 594, 636
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	3 cut(s)	274, 387, 592
FbaI	TGATCA	1 cut(s)	241
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	395, 501
GlaI	GCGC	1 cut(s)	470
GsaI	CCCAGC	2 cut(s)	261, 303
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	77, 108
HapII	CCGG	1 cut(s)	295
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	278, 391, 596
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	2 cut(s)	349, 571
Hpy166II	GTNNAC	4 cut(s)	43, 132, 267, 351
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	4 cut(s)	43, 132, 267, 351
HpyAV	CCTTC	3 cut(s)	217, 364, 544
HpyCH4III	ACNGT	3 cut(s)	217, 271, 355
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	278, 491, 512, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 475, 518
HpyF3I	CTNAG	2 cut(s)	66, 327
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	278, 391, 596
HspAI	GCGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	241, 322, 576, 614
LmnI	GCTCC	2 cut(s)	188, 195
Lsp1109I	GCAGC	7 cut(s)	29, 32, 114, 160, 375, 496, 508
MaeI	CTAG	2 cut(s)	395, 501
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	355, 565
MalI	GATC	4 cut(s)	243, 324, 578, 616
MboI	GATC	4 cut(s)	241, 322, 576, 614
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	23, 105
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	2 cut(s)	221, 296
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	68, 475, 518
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	4 cut(s)	241, 322, 576, 614
NlaIII	CATG	3 cut(s)	278, 391, 596
NlaIV	GGNNCC	4 cut(s)	27, 109, 184, 324
NmuCI	GTSAC	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	219
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	2 cut(s)	257, 299
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	4 cut(s)	27, 109, 184, 324
PspPI	GGNCC	2 cut(s)	107, 132
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	322
Sau3AI	GATC	4 cut(s)	241, 322, 576, 614
Sau96I	GGNCC	2 cut(s)	107, 132
ScrFI	CCNGG	2 cut(s)	221, 296
SduI	GDGCHC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	583
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	7 cut(s)	23, 29, 62, 71, 105, 193, 450
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	2 cut(s)	395, 501
StyD4I	CCNGG	2 cut(s)	219, 294
TaaI	ACNGT	3 cut(s)	217, 271, 355
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	144, 210, 561, 628
TasI	AATT	1 cut(s)	425
TauI	GCSGC	3 cut(s)	31, 65, 108
TfiI	GAWTC	1 cut(s)	599
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	7 cut(s)	17, 20, 102, 173, 363, 509, 521
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	132
XspI	CTAG	2 cut(s)	395, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.