Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

3792033 .. 3795037

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGACAGAAGTAGCAGCAGCATCACCGGCGCCGCCGCTATCCGACGTGGAGGACACCAGCGCCGCCGCGGCGGAGACCAAGAGCAGCGGGCCCCAGAAGCTCGAGAGAAAGTGGACCTTCTGGTTCGACAACCAATCTAAGCCAAAGCAGAGCGGCGCTGCTTGGGGCTCCTCTCTCAAAAAAGCTTACACCTTTGAAACTATCCAGGAGTTTTGGTGTCTGTATGATCAGATATTCAAGCCGAGCAAGTTTCCAGCAAATGCTGAGTTCCACTTGTTCAGGGCTGGGATTGAACCTAAGTGGGAGGATCCTGAATGTGCTAATGGAGGGAAGTGGACTGTAACCATCAACCGGAAGGCCAACCTTGATACCATGTGGCTAGAAACTTTGATGGCACTGATTGGAGAGCAATTTGATGAGGGTGATGAGATTTGTGGAGTGGTAGCAAGTGTGCGCCAGAGGCACGACAAACTTTCATTGTGGACTAGGAATGCTGCAAATGAGGCTGCGCAGATGAGCATTGGGAGGAAGTGGAAGGAGATGATCGATGTTACTGATAAGATCAGTTACTCCGTCCATGAAGATAGCAAAAAGGACAGATCAGCGAAGCCTCGATACAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

210

Amino Acids

23.59

Weight (kDa)

5.99

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	34 - 188	1.2e-56	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	71
AciI	CCGC	8 cut(s)	35, 38, 66, 69, 71, 74, 90, 156
AclWI	GGATC	2 cut(s)	305, 318
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	200, 241, 296
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	2 cut(s)	103, 188
AluI	AGCT	2 cut(s)	103, 188
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	305, 318
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	92, 360
ApaI	GGGCCC	1 cut(s)	96
ApeKI	GCWGC	6 cut(s)	17, 20, 87, 161, 497, 509
AspLEI	GCGC	5 cut(s)	34, 65, 161, 459, 514
AspS9I	GGNCC	3 cut(s)	92, 93, 117
AsuHPI	GGTGA	2 cut(s)	18, 437
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	96, 173
BarI	GAAGNNNNNNTAC	1 cut(s)	602
BbvI	GCAGC	6 cut(s)	29, 32, 99, 148, 484, 496
BccI	CCATC	2 cut(s)	356, 388
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	383, 489
BfoI	RGCGCY	3 cut(s)	35, 66, 162
BglI	GCCNNNNNGGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	92, 93, 117
BmiI	GGNNCC	5 cut(s)	33, 94, 95, 172, 312
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	32
Bsa29I	ATCGAT	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	29, 32, 99, 148, 484, 496
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	94, 362
BshNI	GGYRCC	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	29, 355
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	94, 362
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	96, 173
Bsp143I	GATC	5 cut(s)	229, 310, 546, 564, 602
BspACI	CCGC	8 cut(s)	35, 38, 66, 69, 71, 74, 90, 156
BspANI	GGCC	2 cut(s)	94, 362
BspCNI	CTCAG	1 cut(s)	259
BspDI	ATCGAT	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	5 cut(s)	33, 94, 95, 172, 312
BspPI	GGATC	2 cut(s)	305, 318
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	5 cut(s)	229, 310, 546, 564, 602
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	343, 623
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	141, 267, 300
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	3 cut(s)	35, 66, 162
BstHHI	GCGC	5 cut(s)	34, 65, 161, 459, 514
BstKTI	GATC	5 cut(s)	232, 313, 549, 567, 605
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	229, 310, 546, 564, 602
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 71, 100, 463, 506
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	6 cut(s)	29, 32, 99, 148, 484, 496
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	94, 362
BsuTUI	ATCGAT	1 cut(s)	549
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	398, 628
Cac8I	GCNNGC	1 cut(s)	92
CfoI	GCGC	5 cut(s)	34, 65, 161, 459, 514
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	3 cut(s)	92, 93, 117
Cfr42I	CCGCGG	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	549
CviAII	CATG	2 cut(s)	376, 581
DdeI	CTNAG	3 cut(s)	141, 267, 300
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	5 cut(s)	231, 312, 548, 566, 604
DpnII	GATC	5 cut(s)	229, 310, 546, 564, 602
EciI	GGCGGA	1 cut(s)	89
Eco24I	GRGCYC	2 cut(s)	96, 173
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	2 cut(s)	96, 173
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
FaeI	CATG	2 cut(s)	379, 584
FaiI	YATR	3 cut(s)	228, 377, 582
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	2 cut(s)	375, 580
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	229
FriOI	GRGCYC	2 cut(s)	96, 173
FspBI	CTAG	2 cut(s)	383, 489
FspI	TGCGCA	1 cut(s)	513
GlaI	GCGC	5 cut(s)	33, 64, 160, 458, 513
GsaI	CCCAGC	1 cut(s)	291
HaeII	RGCGCY	3 cut(s)	35, 66, 162
HaeIII	GGCC	2 cut(s)	94, 362
HapII	CCGG	2 cut(s)	29, 355
HhaI	GCGC	5 cut(s)	34, 65, 161, 459, 514
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	379, 584
Hin6I	GCGC	5 cut(s)	32, 63, 159, 457, 512
HinP1I	GCGC	5 cut(s)	32, 63, 159, 457, 512
HindIII	AAGCTT	1 cut(s)	186
HpaII	CCGG	2 cut(s)	29, 355
HphI	GGTGA	2 cut(s)	18, 437
Hpy166II	GTNNAC	3 cut(s)	117, 339, 486
Hpy188I	TCNGA	2 cut(s)	46, 234
Hpy188III	TCNNGA	2 cut(s)	106, 314
Hpy8I	GTNNAC	3 cut(s)	117, 339, 486
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	130, 352, 532
HpyCH4III	ACNGT	2 cut(s)	343, 623
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 71, 100, 463, 506
HpyF3I	CTNAG	3 cut(s)	141, 267, 300
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	379, 584
HspAI	GCGC	5 cut(s)	32, 63, 159, 457, 512
KasI	GGCGCC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	229, 310, 546, 564, 602
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	6 cut(s)	29, 32, 99, 148, 484, 496
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	2 cut(s)	383, 489
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	343, 553, 569
MalI	GATC	5 cut(s)	231, 312, 548, 566, 604
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	5 cut(s)	229, 310, 546, 564, 602
MboII	GAAGA	1 cut(s)	596
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	96, 173
MluCI	AATT	1 cut(s)	413
Mly113I	GGCGCC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	9 cut(s)	46, 184, 301, 323, 415, 456, 499, 522, 624
MspA1I	CMGCKG	2 cut(s)	71, 90
MspI	CCGG	2 cut(s)	29, 355
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	5 cut(s)	29, 71, 100, 463, 506
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	5 cut(s)	229, 310, 546, 564, 602
NlaIII	CATG	2 cut(s)	379, 584
NlaIV	GGNNCC	5 cut(s)	33, 94, 95, 172, 312
NmeAIII	GCCGAG	1 cut(s)	270
NsbI	TGCGCA	1 cut(s)	513
PaeR7I	CTCGAG	1 cut(s)	104
PctI	GAATGC	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	207
PluTI	GGCGCC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	5 cut(s)	33, 94, 95, 172, 312
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	3 cut(s)	92, 93, 117
PsuI	RGATCY	1 cut(s)	310
SacII	CCGCGG	1 cut(s)	72
Sau3AI	GATC	5 cut(s)	229, 310, 546, 564, 602
Sau96I	GGNCC	3 cut(s)	92, 93, 117
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	96, 173
SetI	ASST	7 cut(s)	51, 105, 122, 190, 197, 301, 369
SfaNI	GCATC	1 cut(s)	32
SfoI	GGCGCC	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	104
Sfr303I	CCGCGG	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	28
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	8 cut(s)	35, 38, 66, 69, 71, 74, 90, 156
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	383, 489
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	343, 623
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	105, 129, 549, 616
TasI	AATT	1 cut(s)	413
TauI	GCSGC	6 cut(s)	37, 40, 68, 71, 74, 159
TscAI	CASTG	2 cut(s)	405, 628
TseI	GCWGC	6 cut(s)	17, 20, 87, 161, 497, 509
TspDTI	ATGAA	2 cut(s)	468, 597
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	2 cut(s)	405, 628
VpaK11BI	GGWCC	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	2 cut(s)	383, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.