Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

8251459 .. 8254595

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG052600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGACGGAAGTAGCAGCCCCGGCACCGCCGTTATCCGACGTGGAGGACAACACCACCGCCGCGGCGGCAGCAGAGACGAAGAGCAGCGGGCCCCACAAGCTCGAGAGAAAGTGGACCTTCTGGTTCGACAACCAATCTAAGCCCAAGCAAAGCGGCGCTGCTTGGGGCTCCTCTCTCAAAAAAGCCTACACCTTTGAAACCGTCCAGGAGTTTTGGTGTTTGTATGATCAGATATTCAAGCCGAGCAAGTTTCCAGCAAATGCTGAGTTCCACTTGTTCAGGGCTGGGGTTGAACCGAAATGGGAGGATCCTGAATGTGCTAATGGAGGGAAGTGGACTGTCACAAGCAGCAGGAAGGCCAACCTTGATACCATGTGGCTAGAAACTTTGATGGCACTGATTGGAGAGCAATTTGATGAGGGTGATGAGATTTGTGGAGTGGTAGCAAGTGTGCGCCAGAGGCAAGACAAACTTGCATTGTGGACTAGGAATGCTGCAAACGAGGCTGCCCAGGTAAAACAATTTACACTTCAATTTGGATTGCCTCAAACAATTTTTCCATCTATTGTGCTGTCAAATGGTGACATTGTTACACCTTGGCACATTAAATATAGTTGTCGACCTCTTTTATTTGGTGTTAGACTTGCTTCTGGGTGCTCATGGTTGTTGTTTGGATATTTCATTAAAGGAATCATGGGTTCCCTGAAGAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

239

Amino Acids

26.69

Weight (kDa)

7.6

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	34 - 172	3e-51	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	622
AccII	CGCG	1 cut(s)	65
AciI	CCGC	7 cut(s)	29, 60, 63, 65, 68, 90, 156
AclWI	GGATC	2 cut(s)	305, 318
AgsI	TTSAA	4 cut(s)	200, 241, 296, 536
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	207, 513
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	662
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	305, 318
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	92, 360
ApaI	GGGCCC	1 cut(s)	96
ApeKI	GCWGC	7 cut(s)	17, 71, 87, 161, 351, 497, 509
AspLEI	GCGC	2 cut(s)	161, 459
AspS9I	GGNCC	3 cut(s)	92, 93, 117
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	437, 596
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	96, 173
Bbv12I	GWGCWC	1 cut(s)	662
BbvI	GCAGC	7 cut(s)	29, 83, 99, 148, 363, 484, 496
BccI	CCATC	2 cut(s)	388, 571
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	209, 515
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	383, 489
BfoI	RGCGCY	1 cut(s)	162
BglI	GCCNNNNNGGC	1 cut(s)	68
Bme1390I	CCNGG	3 cut(s)	23, 209, 515
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	92, 93, 117
BmiI	GGNNCC	6 cut(s)	27, 94, 95, 172, 312, 703
BmrFI	CCNGG	3 cut(s)	23, 209, 515
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	21, 63, 513, 599
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
BseBI	CCWGG	2 cut(s)	209, 515
BseDI	CCNNGG	4 cut(s)	21, 63, 513, 599
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	7 cut(s)	29, 83, 99, 148, 363, 484, 496
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	94, 362
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	662
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	94, 362
BsoBI	CYCGRG	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	96, 173, 662
Bsp143I	GATC	2 cut(s)	229, 310
BspACI	CCGC	7 cut(s)	29, 60, 63, 65, 68, 90, 156
BspANI	GGCC	2 cut(s)	94, 362
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	6 cut(s)	27, 94, 95, 172, 312, 703
BspPI	GGATC	2 cut(s)	305, 318
BspQI	GCTCTTC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	21, 63, 513, 599
BssMI	GATC	2 cut(s)	229, 310
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	209, 515
Bst4CI	ACNGT	2 cut(s)	205, 343
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	141, 267
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	161, 459
BstKTI	GATC	2 cut(s)	232, 313
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	229, 310
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 100, 463, 506
BstNI	CCWGG	2 cut(s)	209, 515
BstSCI	CCNGG	3 cut(s)	21, 207, 513
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	7 cut(s)	29, 83, 99, 148, 363, 484, 496
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	94, 362
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	92
CfoI	GCGC	2 cut(s)	161, 459
Cfr13I	GGNCC	3 cut(s)	92, 93, 117
Cfr42I	CCGCGG	1 cut(s)	66
CviAII	CATG	3 cut(s)	376, 663, 697
DdeI	CTNAG	2 cut(s)	141, 267
DpnI	GATC	2 cut(s)	231, 312
DpnII	GATC	2 cut(s)	229, 310
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	96, 173
Eco47I	GGWCC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	207, 513
EcoT14I	CCWWGG	1 cut(s)	599
EcoT38I	GRGCYC	2 cut(s)	96, 173
ErhI	CCWWGG	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	3 cut(s)	379, 666, 700
FaiI	YATR	5 cut(s)	228, 377, 615, 664, 698
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 459, 491
FatI	CATG	3 cut(s)	375, 662, 696
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	622
FriOI	GRGCYC	2 cut(s)	96, 173
FspBI	CTAG	2 cut(s)	383, 489
GlaI	GCGC	2 cut(s)	160, 458
GsaI	CCCAGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	94, 362
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	161, 459
Hin1II	CATG	3 cut(s)	379, 666, 700
Hin6I	GCGC	2 cut(s)	159, 457
HinP1I	GCGC	2 cut(s)	159, 457
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HinfI	GANTC	1 cut(s)	693
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	437, 596
Hpy166II	GTNNAC	4 cut(s)	117, 339, 486, 623
Hpy188I	TCNGA	2 cut(s)	40, 234
Hpy188III	TCNNGA	2 cut(s)	106, 314
Hpy8I	GTNNAC	4 cut(s)	117, 339, 486, 623
Hpy99I	CGWCG	2 cut(s)	10, 44
HpyAV	CCTTC	2 cut(s)	130, 352
HpyCH4III	ACNGT	2 cut(s)	205, 343
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	479, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 100, 463, 506
HpyF3I	CTNAG	2 cut(s)	141, 267
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	379, 666, 700
HspAI	GCGC	2 cut(s)	159, 457
Ksp22I	TGATCA	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	229, 310
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	7 cut(s)	29, 83, 99, 148, 363, 484, 496
MaeI	CTAG	2 cut(s)	383, 489
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	343, 584, 592
MalI	GATC	2 cut(s)	231, 312
MboI	GATC	2 cut(s)	229, 310
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	96, 173, 662
MluCI	AATT	5 cut(s)	413, 524, 536, 555, 715
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	40, 184, 301, 323, 415, 456, 499, 558, 636
MseI	TTAA	3 cut(s)	609, 687, 718
MspA1I	CMGCKG	2 cut(s)	65, 90
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	23, 209, 515
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	2 cut(s)	209, 515
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	23, 68, 71, 100, 463, 506
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	2 cut(s)	229, 310
NlaIII	CATG	3 cut(s)	379, 666, 700
NlaIV	GGNNCC	6 cut(s)	27, 94, 95, 172, 312, 703
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	343, 584
PaeR7I	CTCGAG	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	693
PfoI	TCCNGGA	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	207, 513
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	207, 513
PspN4I	GGNNCC	6 cut(s)	27, 94, 95, 172, 312, 703
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	3 cut(s)	92, 93, 117
PsuI	RGATCY	1 cut(s)	310
SacII	CCGCGG	1 cut(s)	66
SalI	GTCGAC	1 cut(s)	621
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	609, 687, 718
Sau3AI	GATC	2 cut(s)	229, 310
Sau96I	GGNCC	3 cut(s)	92, 93, 117
ScrFI	CCNGG	3 cut(s)	23, 209, 515
SduI	GDGCHC	3 cut(s)	96, 173, 662
SetI	ASST	8 cut(s)	45, 105, 122, 197, 369, 519, 601, 628
Sfr274I	CTCGAG	1 cut(s)	104
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	413, 524, 536, 555, 715
SsiI	CCGC	7 cut(s)	29, 60, 63, 65, 68, 90, 156
SspMI	CTAG	2 cut(s)	383, 489
StyD4I	CCNGG	3 cut(s)	21, 207, 513
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	2 cut(s)	205, 343
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	105, 129, 622
TasI	AATT	5 cut(s)	413, 524, 536, 555, 715
TauI	GCSGC	4 cut(s)	65, 68, 71, 159
TfiI	GAWTC	1 cut(s)	693
Tru1I	TTAA	3 cut(s)	609, 687, 718
Tru9I	TTAA	3 cut(s)	609, 687, 718
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	343, 584
TseI	GCWGC	7 cut(s)	17, 71, 87, 161, 351, 497, 509
Tsp45I	GTSAC	2 cut(s)	343, 584
TspDTI	ATGAA	1 cut(s)	673
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	622
XspI	CTAG	2 cut(s)	383, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.