Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

3298222 .. 3301880

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G046600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGACAGAGGTAGCAGCAGCAGCAGTTCCGCCACCACAATTAGACGCTGAGGAAAATAGTGGGTTAGAGGCGGCGGCGGCCGAGGCAAAGATACAGCCGAGCAGTGGGCCCCACAAGCTGGAGAGGAAGTGGACCTTTTGGTTCGATAACCAATCCAAGCCCAAGCAAGGTGCTGCTTGGGGTTCCTCTCTTCGCAAGGCCTACACCTTCGAAACCGTTCAAGAATTCTGGTGTCTGTATGATCAGGTATTCAAGCCAAGCAAGTTTCCACCAAATGCAGATTTCCACTTGTTCAGGGCTGGGGTTGAACCAAAATGGGAGGATCCTGAGTGTGCTAATGGAGGGAAGTGGACTGTCACCAGCAGGAGTAAGGCCAGCCTTGATACCATGTGGCTAGAGACCTTGATGGCGCTGATTGGAGAGCAATTTGATGAGGCTGATGAGATTTGCGGGGTGGTAGCAAGTGTGCGCCAGAGGCAGGACAAACTTGCATTATGGACTAGGAATGCTGCAAACGAGGCTGCCCAGATGGGCATTGGGAGGAAGTGGAAGGAGATAATCGATGTCACTGATAAGATCACCTACAGCTTCCATGACGATTCTAAAAGGGAAAGATCAGCAAAGCCTCGATACAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

215

Amino Acids

24.14

Weight (kDa)

5.74

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	5 cut(s)	32, 74, 77, 80, 453
AclWI	GGATC	2 cut(s)	320, 333
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	4 cut(s)	107, 121, 170, 481
AgsI	TTSAA	3 cut(s)	224, 256, 311
AluBI	AGCT	2 cut(s)	121, 591
AluI	AGCT	2 cut(s)	121, 591
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	320, 333
AoxI	GGCC	4 cut(s)	81, 110, 201, 375
ApaI	GGGCCC	1 cut(s)	114
ApeKI	GCWGC	6 cut(s)	17, 20, 23, 176, 512, 524
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	415, 474
AspS9I	GGNCC	3 cut(s)	110, 111, 135
AsuHPI	GGTGA	2 cut(s)	352, 574
AsuII	TTCGAA	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	6 cut(s)	29, 32, 35, 163, 499, 511
BccI	CCATC	2 cut(s)	403, 526
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	398, 504
BfmI	CTRYAG	1 cut(s)	586
BfoI	RGCGCY	1 cut(s)	416
BisI	GCNGC	9 cut(s)	18, 21, 24, 75, 78, 81, 177, 513, 525
BlsI	GCNGC	9 cut(s)	19, 22, 25, 76, 79, 82, 178, 514, 526
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	3 cut(s)	110, 111, 135
BmiI	GGNNCC	4 cut(s)	112, 113, 187, 327
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 121, 170, 481
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	4 cut(s)	107, 121, 170, 481
BseMII	CTCAG	2 cut(s)	42, 321
BseSI	GKGCMC	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	6 cut(s)	29, 32, 35, 163, 499, 511
BseYI	CCCAGC	1 cut(s)	302
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	83, 112, 203, 377
BshVI	ATCGAT	1 cut(s)	564
BsiEI	CGRYCG	1 cut(s)	84
BslI	CCNNNNNNNGG	4 cut(s)	107, 121, 170, 481
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	4 cut(s)	83, 112, 203, 377
Bso31I	GGTCTC	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	213
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	244, 325, 579, 617
BspACI	CCGC	5 cut(s)	32, 74, 77, 80, 453
BspANI	GGCC	4 cut(s)	83, 112, 203, 377
BspCNI	CTCAG	2 cut(s)	43, 322
BspDI	ATCGAT	1 cut(s)	564
BspLI	GGNNCC	4 cut(s)	112, 113, 187, 327
BspPI	GGATC	2 cut(s)	320, 333
BspT104I	TTCGAA	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	4 cut(s)	244, 325, 579, 617
Bst4CI	ACNGT	2 cut(s)	220, 358
Bst6I	CTCTTC	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	51, 330
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	2 cut(s)	415, 474
BstKTI	GATC	4 cut(s)	247, 328, 582, 620
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	244, 325, 579, 617
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 80, 86, 118, 478, 521
BstSFI	CTRYAG	1 cut(s)	586
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	6 cut(s)	29, 32, 35, 163, 499, 511
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	564
BsuRI	GGCC	4 cut(s)	83, 112, 203, 377
BsuTUI	ATCGAT	1 cut(s)	564
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 570
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	2 cut(s)	415, 474
Cfr13I	GGNCC	3 cut(s)	110, 111, 135
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	1 cut(s)	56
CviAII	CATG	2 cut(s)	391, 596
DdeI	CTNAG	2 cut(s)	51, 330
DpnI	GATC	4 cut(s)	246, 327, 581, 619
DpnII	GATC	4 cut(s)	244, 325, 579, 617
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	135
Eco52I	CGGCCG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	2 cut(s)	394, 599
FaiI	YATR	4 cut(s)	243, 392, 499, 597
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	2 cut(s)	390, 595
FauI	CCCGC	1 cut(s)	446
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	9 cut(s)	18, 21, 24, 75, 78, 81, 177, 513, 525
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	9 cut(s)	18, 21, 24, 75, 78, 81, 177, 513, 525
FspBI	CTAG	2 cut(s)	398, 504
GlaI	GCGC	2 cut(s)	414, 473
GluI	GCNGC	9 cut(s)	18, 21, 24, 75, 78, 81, 177, 513, 525
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	83, 112, 203, 377
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	415, 474
Hin1II	CATG	2 cut(s)	394, 599
Hin6I	GCGC	2 cut(s)	413, 472
HinP1I	GCGC	2 cut(s)	413, 472
HinfI	GANTC	1 cut(s)	602
HphI	GGTGA	2 cut(s)	352, 574
Hpy166II	GTNNAC	2 cut(s)	135, 354
Hpy188III	TCNNGA	2 cut(s)	224, 329
Hpy8I	GTNNAC	2 cut(s)	135, 354
HpyAV	CCTTC	2 cut(s)	220, 547
HpyCH4III	ACNGT	2 cut(s)	220, 358
HpyCH4V	TGCA	3 cut(s)	281, 494, 515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 80, 86, 118, 478, 521
HpyF3I	CTNAG	2 cut(s)	51, 330
Hsp92II	CATG	2 cut(s)	394, 599
HspAI	GCGC	2 cut(s)	413, 472
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	244, 325, 579, 617
Lsp1109I	GCAGC	6 cut(s)	29, 32, 35, 163, 499, 511
MaeI	CTAG	2 cut(s)	398, 504
MaeIII	GTNAC	2 cut(s)	358, 568
MalI	GATC	4 cut(s)	246, 327, 581, 619
MboI	GATC	4 cut(s)	244, 325, 579, 617
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	41, 227, 428
MroXI	GAANNNNTTC	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	514
MwoI	GCNNNNNNNGC	6 cut(s)	23, 80, 86, 118, 478, 521
NdeII	GATC	4 cut(s)	244, 325, 579, 617
NlaIII	CATG	2 cut(s)	394, 599
NlaIV	GGNNCC	4 cut(s)	112, 113, 187, 327
NmeAIII	GCCGAG	2 cut(s)	109, 126
NmuCI	GTSAC	2 cut(s)	358, 568
NspV	TTCGAA	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	203
PctI	GAATGC	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	9 cut(s)	19, 22, 25, 76, 79, 82, 178, 514, 526
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	4 cut(s)	112, 113, 187, 327
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	110, 111, 135
PsuI	RGATCY	1 cut(s)	325
SatI	GCNGC	9 cut(s)	18, 21, 24, 75, 78, 81, 177, 513, 525
Sau3AI	GATC	4 cut(s)	244, 325, 579, 617
Sau96I	GGNCC	3 cut(s)	110, 111, 135
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	9 cut(s)	15, 123, 140, 175, 212, 252, 407, 587, 593
SfcI	CTRYAG	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	213
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	3 cut(s)	41, 227, 428
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	5 cut(s)	32, 74, 77, 80, 453
SspMI	CTAG	2 cut(s)	398, 504
StuI	AGGCCT	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	220, 358
TaqI	TCGA	4 cut(s)	147, 213, 564, 631
TasI	AATT	3 cut(s)	41, 227, 428
TauI	GCSGC	3 cut(s)	77, 80, 83
TfiI	GAWTC	1 cut(s)	602
TscAI	CASTG	2 cut(s)	112, 577
TseFI	GTSAC	2 cut(s)	358, 568
TseI	GCWGC	6 cut(s)	17, 20, 23, 176, 512, 524
Tsp45I	GTSAC	2 cut(s)	358, 568
TspRI	CASTG	2 cut(s)	112, 577
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	2 cut(s)	398, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.