Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

8356150 .. 8359143

Gene Structure 2994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGACGGAAGTAGCAGCACCGGCACCGCCGTTATCCGACGTGGAGGACAACACCACCGCCGCGGCGGCGGCGGCAGAAGAGACGAAGAGCAGCGGGCCCCACAAGCTCGAGAGAAAGTGGACCTTCTGGTTCGACAACCAATCTAAGCCCAAGCAAAGTGGCGCTGCTTGGGGCTCCTCTCTCAAAAAAGCCTACACCTTTGACACCGTCCAGGAGTTTTGGTGTTTGTATGATCAGATATTCAAGCCTAGCAAGTTTCCAGCAAATGCTGAGTTCCACTTGTTCAGGGCTGGGGTTGAACCGAAATGGGAGGATCCTGAATGTGCTAATGGAGGGAAGTGGACTGTCACCAGCAGCAGGAAGGCCAACCTTGATACCATGTGGCTAGAAACTTTGATGGCACTGATTGGAGAGCAATTTGATGAGGGTGATGAGATCTGTGGGGTGGTAGCAAGTGTGCGCCAGAGGCAAGACAAACTTGCATTGTGGACTAGGAATGCTGCAAACGAGGCTGCCCAGATGAGCATTGGGAGGAAGTGGAAGGAGATAATTGATGTTACTGAAAAGATCACTTACAGCTTCCATGATGATAGTAAAAGGGAAAGATCAGCGAAGCCTCGATACAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

211

Amino Acids

23.83

Weight (kDa)

5.74

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	36 - 192	2.1e-56	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	65
AciI	CCGC	8 cut(s)	29, 60, 63, 65, 68, 71, 74, 96
AclWI	GGATC	2 cut(s)	311, 324
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	247, 302
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	2 cut(s)	109, 582
AluI	AGCT	2 cut(s)	109, 582
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	311, 324
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	98, 366
ApaI	GGGCCC	1 cut(s)	102
ApeKI	GCWGC	6 cut(s)	17, 93, 167, 357, 503, 515
AspLEI	GCGC	2 cut(s)	167, 465
AspS9I	GGNCC	3 cut(s)	98, 99, 123
AsuHPI	GGTGA	2 cut(s)	343, 443
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	102, 179
BarI	GAAGNNNNNNTAC	1 cut(s)	608
BbvI	GCAGC	6 cut(s)	29, 105, 154, 369, 490, 502
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	252, 389, 495
BfoI	RGCGCY	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	98, 99, 123
BmiI	GGNNCC	5 cut(s)	27, 100, 101, 178, 318
BmrFI	CCNGG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	6 cut(s)	29, 105, 154, 369, 490, 502
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	100, 368
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	100, 368
BsoBI	CYCGRG	1 cut(s)	110
Bsp120I	GGGCCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	102, 179
Bsp143I	GATC	5 cut(s)	235, 316, 438, 570, 608
BspACI	CCGC	8 cut(s)	29, 60, 63, 65, 68, 71, 74, 96
BspANI	GGCC	2 cut(s)	100, 368
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	5 cut(s)	27, 100, 101, 178, 318
BspPI	GGATC	2 cut(s)	311, 324
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	5 cut(s)	235, 316, 438, 570, 608
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	211, 349
Bst6I	CTCTTC	2 cut(s)	75, 83
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	147, 273
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 465
BstKTI	GATC	5 cut(s)	238, 319, 441, 573, 611
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	5 cut(s)	235, 316, 438, 570, 608
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 68, 71, 74, 106, 469, 512
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	102
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	6 cut(s)	29, 105, 154, 369, 490, 502
BstX2I	RGATCY	2 cut(s)	316, 438
BstYI	RGATCY	2 cut(s)	316, 438
BsuRI	GGCC	2 cut(s)	100, 368
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	2 cut(s)	167, 465
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	3 cut(s)	98, 99, 123
Cfr42I	CCGCGG	1 cut(s)	66
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	2 cut(s)	382, 587
DdeI	CTNAG	2 cut(s)	147, 273
DpnI	GATC	5 cut(s)	237, 318, 440, 572, 610
DpnII	GATC	5 cut(s)	235, 316, 438, 570, 608
Eam1104I	CTCTTC	2 cut(s)	75, 83
EarI	CTCTTC	2 cut(s)	75, 83
Eco24I	GRGCYC	2 cut(s)	102, 179
Eco47I	GGWCC	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	102, 179
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	2 cut(s)	385, 590
FaiI	YATR	3 cut(s)	234, 383, 588
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 465, 497
FatI	CATG	2 cut(s)	381, 586
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	235
FriOI	GRGCYC	2 cut(s)	102, 179
FspBI	CTAG	3 cut(s)	252, 389, 495
GlaI	GCGC	2 cut(s)	166, 464
GsaI	CCCAGC	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	100, 368
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	167, 465
Hin1II	CATG	2 cut(s)	385, 590
Hin6I	GCGC	2 cut(s)	165, 463
HinP1I	GCGC	2 cut(s)	165, 463
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	343, 443
Hpy166II	GTNNAC	3 cut(s)	123, 345, 492
Hpy188I	TCNGA	2 cut(s)	40, 240
Hpy188III	TCNNGA	2 cut(s)	112, 320
Hpy8I	GTNNAC	3 cut(s)	123, 345, 492
Hpy99I	CGWCG	2 cut(s)	10, 44
HpyAV	CCTTC	3 cut(s)	136, 358, 538
HpyCH4III	ACNGT	2 cut(s)	211, 349
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	485, 506
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 68, 71, 74, 106, 469, 512
HpyF3I	CTNAG	2 cut(s)	147, 273
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	385, 590
HspAI	GCGC	2 cut(s)	165, 463
Ksp22I	TGATCA	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	235, 316, 438, 570, 608
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	6 cut(s)	29, 105, 154, 369, 490, 502
MaeI	CTAG	3 cut(s)	252, 389, 495
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	349, 559
MalI	GATC	5 cut(s)	237, 318, 440, 572, 610
MboI	GATC	5 cut(s)	235, 316, 438, 570, 608
MboII	GAAGA	2 cut(s)	92, 100
MflI	RGATCY	2 cut(s)	316, 438
MhlI	GDGCHC	2 cut(s)	102, 179
MluCI	AATT	2 cut(s)	419, 552
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	40, 190, 307, 329, 421, 462, 505, 528, 630
MspA1I	CMGCKG	2 cut(s)	65, 96
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	7 cut(s)	23, 68, 71, 74, 106, 469, 512
NdeII	GATC	5 cut(s)	235, 316, 438, 570, 608
NlaIII	CATG	2 cut(s)	385, 590
NlaIV	GGNNCC	5 cut(s)	27, 100, 101, 178, 318
NmuCI	GTSAC	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	505
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	5 cut(s)	27, 100, 101, 178, 318
PspOMI	GGGCCC	1 cut(s)	98
PspPI	GGNCC	3 cut(s)	98, 99, 123
PsuI	RGATCY	2 cut(s)	316, 438
PsyI	GACNNNGTC	1 cut(s)	209
SacII	CCGCGG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	83
Sau3AI	GATC	5 cut(s)	235, 316, 438, 570, 608
Sau96I	GGNCC	3 cut(s)	98, 99, 123
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	102, 179
SetI	ASST	6 cut(s)	45, 111, 128, 203, 375, 584
Sfr274I	CTCGAG	1 cut(s)	110
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	419, 552
SsiI	CCGC	8 cut(s)	29, 60, 63, 65, 68, 71, 74, 96
SspMI	CTAG	3 cut(s)	252, 389, 495
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	211, 349
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	111, 135, 622
TasI	AATT	2 cut(s)	419, 552
TauI	GCSGC	5 cut(s)	65, 68, 71, 74, 77
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	6 cut(s)	17, 93, 167, 357, 503, 515
Tsp45I	GTSAC	1 cut(s)	349
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	411
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	3 cut(s)	252, 389, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.