Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

21294559 .. 21296843

Gene Structure 2285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1219900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCGACAGAGATTGCAGCAGCGGCGCCGCCACCAGCGGTAGACACAGAGGAGAATATTTCGGAGGAGGCGGCCGCCGATACCAAGATACAGGCAAGCAGCGGTCCCCACAAGCTGGAGAGAAAGTGGACCTTTTGGTTCGATAACCAATCCAAGCCCAAGCAAGGCGCTGCGTGGGGCTCCTCCCTCCGCAAAGCCTACACCTTCGAAACCGTCCAGGAGTTTTGGTGTCTGTACGATCAGGTATTCAAGCCAAGCAAGTTGACACCGAATGCAGACTTTCACTTGTTCCGGGCTGGAGTTGAACCGAAATGGGAGGATCCTGAGTGTGCTAGTGGAGGGAAGTGGACTGTCATCAGCAGCAGGAAGGCCAACCTTGATACGATGTGGCTAGAGACTTTGATGGCACTGATTGGGGAGCAATTTGATGAGGTGGATGAGATTTGTGGAGTGGTAGCAAGTGTGCGCCAGAGGCAGGACAAACTTGCACTATGGACTAGGAATGCTGCAAACGAAGCTGCACAGATGAGCATCGGGAGAAAGTGGAAGGAGATAATCGATGTTACCGATAAGATGACCTACAGCTTCCATGACGATTCCAAAAGGGAAAGATCAGCAAAGCCTCGATACAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

213

Amino Acids

24.08

Weight (kDa)

5.53

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	38 - 194	1.4e-55	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccI	GTMKAC	2 cut(s)	5, 42
AciI	CCGC	7 cut(s)	23, 29, 38, 71, 75, 102, 190
AclWI	GGATC	2 cut(s)	314, 327
AcoI	YGGCCR	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	115, 164, 475
AgsI	TTSAA	2 cut(s)	250, 305
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	3 cut(s)	115, 518, 585
AluI	AGCT	3 cut(s)	115, 518, 585
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	2 cut(s)	314, 327
AoxI	GGCC	2 cut(s)	72, 369
ApeKI	GCWGC	7 cut(s)	17, 20, 99, 170, 360, 506, 518
AspLEI	GCGC	3 cut(s)	28, 170, 468
AspS9I	GGNCC	2 cut(s)	104, 129
AsuC2I	CCSGG	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	207
AvaII	GGWCC	2 cut(s)	104, 129
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	182
BbvI	GCAGC	7 cut(s)	29, 32, 111, 157, 372, 493, 505
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	3 cut(s)	333, 392, 498
BfmI	CTRYAG	1 cut(s)	580
BfoI	RGCGCY	2 cut(s)	29, 171
Bme1390I	CCNGG	2 cut(s)	218, 293
Bme18I	GGWCC	2 cut(s)	104, 129
BmgT120I	GGNCC	2 cut(s)	104, 129
BmiI	GGNNCC	4 cut(s)	27, 106, 181, 321
BmrFI	CCNGG	2 cut(s)	218, 293
BmsI	GCATC	1 cut(s)	540
BpmI	CTGGAG	2 cut(s)	137, 318
Bpu14I	TTCGAA	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 164, 475
Bse8I	GATNNNNATC	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	218
BseCI	ATCGAT	1 cut(s)	558
BseGI	GGATG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	3 cut(s)	115, 164, 475
BseMII	CTCAG	1 cut(s)	315
BseRI	GAGGAG	3 cut(s)	65, 80, 172
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	7 cut(s)	29, 32, 111, 157, 372, 493, 505
BsgI	GTGCAG	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	74, 371
BshNI	GGYRCC	1 cut(s)	25
BshVI	ATCGAT	1 cut(s)	558
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	115, 164, 475
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	2 cut(s)	277, 508
BsnI	GGCC	2 cut(s)	74, 371
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	238, 319, 611
BspACI	CCGC	7 cut(s)	23, 29, 38, 71, 75, 102, 190
BspANI	GGCC	2 cut(s)	74, 371
BspCNI	CTCAG	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	27, 106, 181, 321
BspPI	GGATC	2 cut(s)	314, 327
BspT104I	TTCGAA	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	25
BssMI	GATC	3 cut(s)	238, 319, 611
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	214, 352
BstACI	GRCGYC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	442
BstH2I	RGCGCY	2 cut(s)	29, 171
BstHHI	GCGC	3 cut(s)	28, 170, 468
BstKTI	GATC	3 cut(s)	241, 322, 614
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	238, 319, 611
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 472, 515
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	216, 291
BstSFI	CTRYAG	1 cut(s)	580
BstV1I	GCAGC	7 cut(s)	29, 32, 111, 157, 372, 493, 505
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BstZI	CGGCCG	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	74, 371
BsuTUI	ATCGAT	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	97
CciNI	GCGGCCGC	1 cut(s)	72
CfoI	GCGC	3 cut(s)	28, 170, 468
Cfr13I	GGNCC	2 cut(s)	104, 129
ClaI	ATCGAT	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	590
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	324
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	3 cut(s)	240, 321, 613
DpnII	GATC	3 cut(s)	238, 319, 611
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	104, 129
Eco52I	CGGCCG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	182
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
FaeI	CATG	1 cut(s)	593
FaiI	YATR	2 cut(s)	493, 591
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	589
FblI	GTMKAC	2 cut(s)	5, 42
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	182
FspBI	CTAG	3 cut(s)	333, 392, 498
GlaI	GCGC	3 cut(s)	27, 169, 467
GsuI	CTGGAG	2 cut(s)	137, 318
HaeII	RGCGCY	2 cut(s)	29, 171
HaeIII	GGCC	2 cut(s)	74, 371
HapII	CCGG	1 cut(s)	292
HhaI	GCGC	3 cut(s)	28, 170, 468
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	593
Hin6I	GCGC	3 cut(s)	26, 168, 466
HinP1I	GCGC	3 cut(s)	26, 168, 466
HincII	GTYRAC	2 cut(s)	6, 264
HindII	GTYRAC	2 cut(s)	6, 264
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	1 cut(s)	292
Hpy166II	GTNNAC	5 cut(s)	6, 43, 129, 264, 348
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	323, 535
Hpy8I	GTNNAC	5 cut(s)	6, 43, 129, 264, 348
HpyAV	CCTTC	3 cut(s)	214, 361, 541
HpyCH4III	ACNGT	2 cut(s)	214, 352
HpyCH4V	TGCA	5 cut(s)	17, 275, 488, 509, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 472, 515
HpyF3I	CTNAG	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	593
HspAI	GCGC	3 cut(s)	26, 168, 466
KasI	GGCGCC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	238, 319, 611
LmnI	GCTCC	2 cut(s)	185, 418
Lsp1109I	GCAGC	7 cut(s)	29, 32, 111, 157, 372, 493, 505
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	3 cut(s)	333, 392, 498
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	3 cut(s)	240, 321, 613
MboI	GATC	3 cut(s)	238, 319, 611
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	422
Mly113I	GGCGCC	1 cut(s)	26
MspA1I	CMGCKG	3 cut(s)	23, 38, 102
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	2 cut(s)	218, 293
Mva1269I	GAATGC	2 cut(s)	277, 508
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	23, 472, 515
NarI	GGCGCC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	3 cut(s)	238, 319, 611
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	4 cut(s)	27, 106, 181, 321
NotI	GCGGCCGC	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	2 cut(s)	277, 508
PfeI	GAWTC	1 cut(s)	596
PflMI	CCANNNNNTGG	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	216
PluTI	GGCGCC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	27, 106, 181, 321
PspPI	GGNCC	2 cut(s)	104, 129
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	4
Sau3AI	GATC	3 cut(s)	238, 319, 611
Sau96I	GGNCC	2 cut(s)	104, 129
ScrFI	CCNGG	2 cut(s)	218, 293
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	9 cut(s)	117, 134, 206, 246, 378, 435, 520, 581, 587
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	580
SfoI	GGCGCC	1 cut(s)	27
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	2 cut(s)	104, 129
Sse9I	AATT	1 cut(s)	422
SsiI	CCGC	7 cut(s)	23, 29, 38, 71, 75, 102, 190
SspDI	GGCGCC	1 cut(s)	25
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	3 cut(s)	333, 392, 498
StyD4I	CCNGG	2 cut(s)	216, 291
TaaI	ACNGT	2 cut(s)	214, 352
TaqI	TCGA	5 cut(s)	5, 141, 207, 558, 625
TasI	AATT	1 cut(s)	422
TauI	GCSGC	4 cut(s)	26, 31, 74, 77
TfiI	GAWTC	1 cut(s)	596
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	7 cut(s)	17, 20, 99, 170, 360, 506, 518
TspRI	CASTG	1 cut(s)	414
Van91I	CCANNNNNTGG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	104, 129
XmiI	GTMKAC	2 cut(s)	5, 42
XspI	CTAG	3 cut(s)	333, 392, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.