Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005510

Physical Location & Seq

Genomic Coordinates Reverse (-)

14235835 .. 14238072

Gene Structure 2238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G36170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGTCCATGGAGCTCACCGTTCTCGGACCCCTCGCCGGTCGGAGTTTCGCAATCGCCGGAAAACCTAAACTTCTGCTTCTTCGACCAACAAACCTCCCTCTTCTCCGTCTCTCACTCCCGCTTTCTCTTCCCAATTTCTCTTCGTCCTCTCGTTTTAATTCGCCCATAGTATTCGCTGCACAGGAGAGTAACTTGAGTGTATCCAACGAAAACGAAACCAGTGAGTGGCTGATGCAAGATTTTTATACATTGAGAAAAGATGTAGAAATAGCATCAGCTCGTGTTGAAGAGATTAGAGCTTCTGCTAATTTACAACAACTAGAACAAGAGATTACAAATCTGGAATCAAAAGCTACTGATACATCGTTTTGGGATGATCGTACTAAAGCTCAAGAAACTTTATCGTCTTTAAATGATCTTAAAGATCGTATGCGGTTACTCTCTGAGTTCAAAACGATGGTTGAAGATGCCGAAACGATTGTTAAACTAACAGAAGAGATGGACTCTACTGATGTTAGTTTACTTGAAGAAGCCATGGGAATCATTAAAGAGTTGAATAAATCTTTAGATAAATTTGAGCTTACTCAGCTTTTATCAGGACCTTATGACAAAGAAGGTGCTGTTGTTTACATTACAGCTGGAGCTGGAGGAACAGATGCACAGGATTGGGCTGATATGTTGCTTAGGATGTATATGAGATGGGGAGAGAAGCAGCGGTACAAGACGAAAGTTGTTGAAATGTCTAATGGAGAAGAGGCAGGGATTAAGTCAGCGACTCTTGAAATTGAAGGGCGTTATGCATATGGTTACATTTCAGGGGAGAAAGGAACTCATAGGATTGTCCGACAATCGCCTTTCAATTCGAAAGGTCTTCGCCAGACAAGCTTTTCTGGTGTGGAAGTGATGCCGCTTTTGCCTGAGGAAGCGGTGGGAATCGAAATACCAGAAGAGGACCTTGACATTAGTTTCACGAGGGCAGGTGGGAAAGGAGGACAGAATGTTAACAAGGTTGAAACTGCTGTACGGATTACTCATATCCCTACTGGTGTTGCTGTTCGTTGCACAGAGGAGAGAAGTCAACTGGCGAACAAGACGAGAGCTCTGATCAGACTAAAAGCGAAACTGATGGTGATTGCGGAGGAGCAACGTGCTACTGAAATCAAGGAAATAAGAGGAGATGCAGTGAAAGCTGAATGGGGACAGCAGATCAGGAACTACGTGTTTCATCCGTACAAACTCGTTAAGGATGTCCGAACAGGTCATGAAACTTCTGATATCACATCTGTAATGGATGGTGACTTGGACCCTTTCATCAAAGCTTACCTTAAGCATAAGTACACCTTAGCCATGGCTTCTGCTGTAACCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006415 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

456

Amino Acids

50.98

Weight (kDa)

5.35

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	107 - 299	4.6e-52	PCRF domain
RF-1	PF00472	310 - 418	2.3e-35	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36170 AT5G36170 AT5G36170 AT5G36170
fragaria_vesca	FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190
malus_domestica	MD04G1247400.v1.1 MD12G1263000.v1.1
prunus_persica	Prupe.6G363800_v2.0.a1 Prupe.6G363800_v2.0.a1
pyrus_communis	pycom04g21810
rosa_chinensis	RchiOBHm_Chr3g0447561
rosa_laevigata	RLG00000025989
rosa_multiflora	Rmu_co8330713.1_g000001 Rmu_co8444065.1_g000001 Rmu_sc0031754.1_g000001 Rmu_sc0037294.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425770
rosa_rugosa	Rorug02G0602900
rosa_samantha	Rh3AG003200 Rh3BG002700 Rh3CG003000 Rh3DG003000
rosa_wichuraiana	Rw3G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	968
Acc36I	ACCTGC	1 cut(s)	968
AccB7I	CCANNNNNTGG	1 cut(s)	225
AciI	CCGC	6 cut(s)	119, 433, 715, 908, 926, 1136
AcsI	RAATTY	1 cut(s)	572
AfaI	GTAC	5 cut(s)	382, 719, 1023, 1232, 1337
AfiI	CCNNNNNNNGG	2 cut(s)	35, 225
AflII	CTTAAG	1 cut(s)	1325
AflIII	ACRYGT	1 cut(s)	1218
Alw21I	GWGCWC	2 cut(s)	15, 1102
Alw26I	GTCTC	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	176, 712
ApoI	RAATTY	1 cut(s)	572
AspS9I	GGNCC	4 cut(s)	26, 599, 952, 1303
AsuHPI	GGTGA	3 cut(s)	7, 1141, 1307
AsuII	TTCGAA	1 cut(s)	863
AvaII	GGWCC	4 cut(s)	26, 599, 952, 1303
AxyI	CCTNAGG	1 cut(s)	918
BanII	GRGCYC	2 cut(s)	15, 1102
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BauI	CACGAG	2 cut(s)	279, 970
BbsI	GAAGAC	1 cut(s)	863
Bbv12I	GWGCWC	2 cut(s)	15, 1102
BbvI	GCAGC	2 cut(s)	163, 724
BccI	CCATC	5 cut(s)	451, 493, 693, 1120, 1286
BciVI	GTATCC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	1104
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	320
BfrI	CTTAAG	1 cut(s)	1325
BfuAI	ACCTGC	1 cut(s)	968
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	177, 713, 908
BlsI	GCNGC	3 cut(s)	178, 714, 909
Bme18I	GGWCC	4 cut(s)	26, 599, 952, 1303
BmgT120I	GGNCC	4 cut(s)	26, 599, 952, 1303
BmiI	GGNNCC	2 cut(s)	28, 1305
BmsI	GCATC	6 cut(s)	222, 281, 457, 646, 894, 1168
BpiI	GAAGAC	1 cut(s)	863
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	2 cut(s)	660, 666
Bpu10I	CCTNAGC	2 cut(s)	683, 1342
Bpu14I	TTCGAA	1 cut(s)	863
BpuEI	CTTGAG	2 cut(s)	214, 375
BsaAI	YACGTR	1 cut(s)	1219
BsaJI	CCNNGG	3 cut(s)	6, 534, 1347
BsaXI	ACNNNNNCTCC	2 cut(s)	1167, 1197
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 225
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	219, 1048, 1086
Bse21I	CCTNAGG	1 cut(s)	918
BseDI	CCNNGG	3 cut(s)	6, 534, 1347
BseGI	GGATG	5 cut(s)	379, 693, 1225, 1252, 1297
BseLI	CCNNNNNNNGG	2 cut(s)	35, 225
BseMII	CTCAG	3 cut(s)	435, 599, 909
BseNI	ACTGG	3 cut(s)	219, 1048, 1086
BseRI	GAGGAG	3 cut(s)	1082, 1154, 1188
BseXI	GCAGC	2 cut(s)	163, 724
BsgI	GTGCAG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	15, 1102
BsiSI	CCGG	2 cut(s)	36, 57
BslFI	GGGAC	1 cut(s)	1212
BslI	CCNNNNNNNGG	2 cut(s)	35, 225
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	1212
Bsp119I	TTCGAA	1 cut(s)	863
Bsp1286I	GDGCHC	2 cut(s)	15, 1102
Bsp143I	GATC	5 cut(s)	376, 415, 424, 1104, 1206
Bsp19I	CCATGG	3 cut(s)	6, 534, 1347
BspACI	CCGC	6 cut(s)	119, 433, 715, 908, 926, 1136
BspCNI	CTCAG	3 cut(s)	436, 598, 910
BspHI	TCATGA	1 cut(s)	1261
BspLI	GGNNCC	2 cut(s)	28, 1305
BspMI	ACCTGC	1 cut(s)	968
BspT104I	TTCGAA	1 cut(s)	863
BspTI	CTTAAG	1 cut(s)	1325
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	219, 1048, 1086
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	6, 534, 1347
BssMI	GATC	5 cut(s)	376, 415, 424, 1104, 1206
BssSI	CACGAG	2 cut(s)	279, 970
BssT1I	CCWWGG	3 cut(s)	6, 534, 1347
Bst2BI	CACGAG	2 cut(s)	279, 970
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	7 cut(s)	105, 132, 145, 282, 489, 747, 942
BstAFI	CTTAAG	1 cut(s)	1325
BstBAI	YACGTR	1 cut(s)	1219
BstBI	TTCGAA	1 cut(s)	863
BstDEI	CTNAG	5 cut(s)	444, 585, 683, 918, 1342
BstDSI	CCRYGG	3 cut(s)	6, 534, 1347
BstF5I	GGATG	5 cut(s)	379, 693, 1225, 1252, 1297
BstKTI	GATC	5 cut(s)	379, 418, 427, 1107, 1209
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	376, 415, 424, 1104, 1206
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	4 cut(s)	586, 882, 913, 1187
BstV1I	GCAGC	2 cut(s)	163, 724
BstV2I	GAAGAC	1 cut(s)	863
Bsu36I	CCTNAGG	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	211
BtgI	CCRYGG	3 cut(s)	6, 534, 1347
BtsCI	GGATG	5 cut(s)	379, 693, 1225, 1252, 1297
BtsI	GCAGTG	1 cut(s)	1188
BtsIMutI	CAGTG	2 cut(s)	226, 1188
BveI	ACCTGC	1 cut(s)	968
CciI	TCATGA	1 cut(s)	1261
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	4 cut(s)	26, 599, 952, 1303
Csp6I	GTAC	5 cut(s)	381, 718, 1022, 1231, 1336
CviAII	CATG	4 cut(s)	7, 535, 1262, 1348
CviQI	GTAC	5 cut(s)	381, 718, 1022, 1231, 1336
DdeI	CTNAG	5 cut(s)	444, 585, 683, 918, 1342
DpnI	GATC	5 cut(s)	378, 417, 426, 1106, 1208
DpnII	GATC	5 cut(s)	376, 415, 424, 1104, 1206
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	7 cut(s)	105, 132, 145, 282, 489, 747, 942
EarI	CTCTTC	7 cut(s)	105, 132, 145, 282, 489, 747, 942
Ecl136II	GAGCTC	2 cut(s)	13, 1100
Eco130I	CCWWGG	3 cut(s)	6, 534, 1347
Eco24I	GRGCYC	2 cut(s)	15, 1102
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	4 cut(s)	26, 599, 952, 1303
Eco53kI	GAGCTC	2 cut(s)	13, 1100
Eco81I	CCTNAGG	1 cut(s)	918
EcoICRI	GAGCTC	2 cut(s)	13, 1100
EcoO109I	RGGNCCY	2 cut(s)	599, 952
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	3 cut(s)	6, 534, 1347
EcoT22I	ATGCAT	1 cut(s)	802
EcoT38I	GRGCYC	2 cut(s)	15, 1102
ErhI	CCWWGG	3 cut(s)	6, 534, 1347
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	4 cut(s)	10, 538, 1265, 1351
FalI	AAGNNNNNCTT	6 cut(s)	939, 971, 1308, 1340, 1325, 1357
FaqI	GGGAC	1 cut(s)	1212
FatI	CATG	4 cut(s)	6, 534, 1261, 1347
FauI	CCCGC	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	802
FbaI	TGATCA	1 cut(s)	1104
Fnu4HI	GCNGC	3 cut(s)	177, 713, 908
FokI	GGATG	5 cut(s)	386, 700, 1212, 1259, 1304
FriOI	GRGCYC	2 cut(s)	15, 1102
Fsp4HI	GCNGC	3 cut(s)	177, 713, 908
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	3 cut(s)	177, 713, 908
GsuI	CTGGAG	2 cut(s)	660, 666
HapII	CCGG	2 cut(s)	36, 57
Hin1II	CATG	4 cut(s)	10, 538, 1265, 1351
HincII	GTYRAC	2 cut(s)	1003, 1079
HindII	GTYRAC	2 cut(s)	1003, 1079
HindIII	AAGCTT	2 cut(s)	883, 1317
HinfI	GANTC	5 cut(s)	344, 503, 540, 775, 933
HpaI	GTTAAC	1 cut(s)	1003
HpaII	CCGG	2 cut(s)	36, 57
HphI	GGTGA	3 cut(s)	7, 1141, 1307
Hpy166II	GTNNAC	5 cut(s)	521, 628, 1003, 1079, 1338
Hpy188I	TCNGA	8 cut(s)	26, 42, 445, 845, 1104, 1109, 1253, 1273
Hpy188III	TCNNGA	7 cut(s)	341, 392, 597, 779, 970, 1210, 1262
Hpy8I	GTNNAC	5 cut(s)	521, 628, 1003, 1079, 1338
HpyAV	CCTTC	2 cut(s)	608, 782
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	1147, 1218
HpyCH4V	TGCA	6 cut(s)	179, 235, 659, 800, 1062, 1181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	586, 882, 913, 1187
HpyF3I	CTNAG	5 cut(s)	444, 585, 683, 918, 1342
HpySE526I	ACGT	2 cut(s)	1147, 1218
Hsp92II	CATG	4 cut(s)	10, 538, 1265, 1351
Ksp22I	TGATCA	1 cut(s)	1104
KspAI	GTTAAC	1 cut(s)	1003
Kzo9I	GATC	5 cut(s)	376, 415, 424, 1104, 1206
LmnI	GCTCC	3 cut(s)	10, 641, 1141
Lsp1109I	GCAGC	2 cut(s)	163, 724
LweI	GCATC	6 cut(s)	222, 281, 457, 646, 894, 1168
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	1147, 1218
MaeIII	GTNAC	5 cut(s)	188, 435, 806, 1295, 1360
MalI	GATC	5 cut(s)	378, 417, 426, 1106, 1208
MboI	GATC	5 cut(s)	376, 415, 424, 1104, 1206
MhlI	GDGCHC	2 cut(s)	15, 1102
MluCI	AATT	7 cut(s)	133, 157, 307, 572, 783, 859, 1366
MlyI	GAGTC	2 cut(s)	497, 769
MmeI	TCCRAC	3 cut(s)	20, 228, 868
Mph1103I	ATGCAT	1 cut(s)	802
MseI	TTAA	9 cut(s)	156, 410, 420, 483, 546, 765, 1002, 1242, 1326
MspA1I	CMGCKG	2 cut(s)	638, 715
MspCI	CTTAAG	1 cut(s)	1325
MspI	CCGG	2 cut(s)	36, 57
MwoI	GCNNNNNNNGC	4 cut(s)	586, 882, 913, 1187
NcoI	CCATGG	3 cut(s)	6, 534, 1347
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	5 cut(s)	376, 415, 424, 1104, 1206
NlaIII	CATG	4 cut(s)	10, 538, 1265, 1351
NlaIV	GGNNCC	2 cut(s)	28, 1305
NmuCI	GTSAC	1 cut(s)	1295
NsiI	ATGCAT	1 cut(s)	802
NspV	TTCGAA	1 cut(s)	863
PagI	TCATGA	1 cut(s)	1261
PaqCI	CACCTGC	1 cut(s)	968
PfeI	GAWTC	3 cut(s)	344, 540, 933
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	178, 714, 909
PleI	GAGTC	2 cut(s)	497, 769
PpsI	GAGTC	2 cut(s)	497, 769
Ppu21I	YACGTR	1 cut(s)	1219
PpuMI	RGGWCCY	2 cut(s)	599, 952
Psp124BI	GAGCTC	2 cut(s)	15, 1102
Psp5II	RGGWCCY	2 cut(s)	599, 952
PspN4I	GGNNCC	2 cut(s)	28, 1305
PspPI	GGNCC	4 cut(s)	26, 599, 952, 1303
PspPPI	RGGWCCY	2 cut(s)	599, 952
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	5 cut(s)	382, 719, 1023, 1232, 1337
RsaNI	GTAC	5 cut(s)	381, 718, 1022, 1231, 1336
SacI	GAGCTC	2 cut(s)	15, 1102
SaqAI	TTAA	9 cut(s)	156, 410, 420, 483, 546, 765, 1002, 1242, 1326
SatI	GCNGC	3 cut(s)	177, 713, 908
Sau3AI	GATC	5 cut(s)	376, 415, 424, 1104, 1206
Sau96I	GGNCC	4 cut(s)	26, 599, 952, 1303
SchI	GAGTC	2 cut(s)	497, 769
SduI	GDGCHC	2 cut(s)	15, 1102
SfaNI	GCATC	6 cut(s)	222, 281, 457, 646, 894, 1168
SfuI	TTCGAA	1 cut(s)	863
SinI	GGWCC	4 cut(s)	26, 599, 952, 1303
SmlI	CTYRAG	3 cut(s)	193, 390, 1325
SmoI	CTYRAG	3 cut(s)	193, 390, 1325
Sse9I	AATT	7 cut(s)	133, 157, 307, 572, 783, 859, 1366
SsiI	CCGC	6 cut(s)	119, 433, 715, 908, 926, 1136
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	2 cut(s)	15, 1102
StyI	CCWWGG	3 cut(s)	6, 534, 1347
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	2 cut(s)	1150, 1221
TaqI	TCGA	3 cut(s)	82, 863, 936
TasI	AATT	7 cut(s)	133, 157, 307, 572, 783, 859, 1366
TatI	WGTACW	1 cut(s)	1335
TauI	GCSGC	1 cut(s)	910
TfiI	GAWTC	3 cut(s)	344, 540, 933
Tru1I	TTAA	9 cut(s)	156, 410, 420, 483, 546, 765, 1002, 1242, 1326
Tru9I	TTAA	9 cut(s)	156, 410, 420, 483, 546, 765, 1002, 1242, 1326
TscAI	CASTG	2 cut(s)	226, 1188
TseFI	GTSAC	1 cut(s)	1295
TseI	GCWGC	2 cut(s)	176, 712
Tsp45I	GTSAC	1 cut(s)	1295
TspDTI	ATGAA	3 cut(s)	1214, 1278, 1300
TspGWI	ACGGA	3 cut(s)	95, 1039, 1218
TspRI	CASTG	2 cut(s)	226, 1188
Van91I	CCANNNNNTGG	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	1325
VpaK11BI	GGWCC	4 cut(s)	26, 599, 952, 1303
XapI	RAATTY	1 cut(s)	572
XspI	CTAG	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.