Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005510

Physical Location & Seq

Genomic Coordinates Reverse (-)

30560877 .. 30564894

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G363800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAGGCTCATCTGAGACCTCTCTGCAGCCCAACAGCCATCTTATGCCCCAAGCCTCCAAATAGCAAACTACCACAGTTACTACAAAGGCCCACTTCGTATACTTCTCGTTTTTGGTACACTGTCTCTACAAAGCTTTCAAGCTATTGTCGATTTCCTCCTACTGTTTTACTTGCGACACCGGAGAGTCAAGTAAGCACGGGGCTCAACACCGACACAAGAGAATGGGCAATGCAAGATTTTTATTTCTTAAGAAGAGATGTTGAAACCACGGCGGAACGTGTTAAAGAGATAAGAGACTCTGCCTGTCTGCAACAGTTAGAACAAGAAGTTGCAGATTTGGAGTTGAAAGCAGCTGATAGCTCCTTTTGGGATGACCGAGCTAAAGCTCAAGAAAACCTTTCGGCCCTGACTGATGTTAAAGACAGGATAAGATTGCTGAATGAGTTCAAATCACAGGTTGAAGATGCAGAAACAATAGTCAAGCTAACTGAAGAGATGGACTCTGTAGATAATGGACTTCTTGAAGAGGCTGCCAGTATCATCAAGGAATTGAACAAGGGACTGGATCAGTTTGAGTTAACTCAACTTCTTTCTGGGCCTTATGACAAAGAAGGTGCTGTCATCTTTATTACAGCTGGTGCTGGAGGAACTGATGCACAGGATTGGGCTGAAATGTTACTCAGGATGTATGTGAGGTGGGGAGAAAAGCAGAGATACAAGACACGAGTAGTTGAGAAGTCCCAAGGAGAGGAAGCTGGAATTAAGTCAGCGACAATTGAAGTTGAAGGTCGTTATGCTTATGGGTATTTGTCTGGGGAGAAAGGAACACACCGCATTGTGAGGCAGTCCCCTTTTAATGCCAAAGGTCTTCGCCAGACAAGCTTCTCTGGTATTGACGTCATGCCTCTTCTACCTGAAGAGTCGTTGAAAGTTGATTTACCTGAAGAGGACCTGGAAATAAGTTTTTCAAGGGCAGGCGGGAAAGGAGGGCAGAATGTGAACAAAGTTGAAAGCGCTGTCCGGATTACTCACATTCCCACTGGTGTTACTGTTCGCTGCACAGAAGAGAGATCTCAGCTTGCAAACAAAATAAAGGCTCTAAGCAGGTTGAAAGCGAAGCTGTTAGTGATAGCTGAGGAGCAAAGGGCATCAGAGATTAAGCAAATACGAGGAGATGTAGTGAAGGCAGAATGGGGCCAACAAATAAGAAATTATGTGTTCCATCCGTATAAACTGGTGAAGGATGTAAGGACAGGATACGAGACGTCGGATATCACTTGTGTAATGGATGGTGATTTAGAGCCTTACATTAAAGCTTACCTCAAACACAAATACAGTATGAAGGTGACTGCTGCAGGTGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006415 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

457

Amino Acids

51.33

Weight (kDa)

5.82

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36170 AT5G36170 AT5G36170 AT5G36170
fragaria_vesca	FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190
malus_domestica	MD04G1247400.v1.1 MD12G1263000.v1.1
prunus_persica	Prupe.6G363800_v2.0.a1 Prupe.6G363800_v2.0.a1
pyrus_communis	pycom04g21810
rosa_chinensis	RchiOBHm_Chr3g0447561
rosa_laevigata	RLG00000025989
rosa_multiflora	Rmu_co8330713.1_g000001 Rmu_co8444065.1_g000001 Rmu_sc0031754.1_g000001 Rmu_sc0037294.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425770
rosa_rugosa	Rorug02G0602900
rosa_samantha	Rh3AG003200 Rh3BG002700 Rh3CG003000 Rh3DG003000
rosa_wichuraiana	Rw3G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1349
AatII	GACGTC	2 cut(s)	903, 1271
Acc36I	ACCTGC	2 cut(s)	1098, 1349
AccI	GTMKAC	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	1023
AciI	CCGC	3 cut(s)	275, 835, 981
AclWI	GGATC	1 cut(s)	576
AcuI	CTGAAG	3 cut(s)	513, 939, 966
AcyI	GRCGYC	2 cut(s)	900, 1268
AfaI	GTAC	1 cut(s)	119
AfeI	AGCGCT	1 cut(s)	1018
AfiI	CCNNNNNNNGG	1 cut(s)	751
AflII	CTTAAG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	954
Alw26I	GTCTC	4 cut(s)	10, 130, 291, 1259
AlwI	GGATC	1 cut(s)	576
Aor13HI	TCCGGA	1 cut(s)	1023
Aor51HI	AGCGCT	1 cut(s)	1018
AoxI	GGCC	4 cut(s)	89, 405, 599, 1198
ApeKI	GCWGC	5 cut(s)	27, 353, 533, 1059, 1355
Asp700I	GAANNNNTTC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	1019
AspS9I	GGNCC	5 cut(s)	90, 406, 599, 952, 1198
AsuHPI	GGTGA	3 cut(s)	1252, 1307, 1360
AvaII	GGWCC	1 cut(s)	952
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	1137
BbvI	GCAGC	5 cut(s)	39, 365, 520, 1046, 1342
BccI	CCATC	4 cut(s)	47, 493, 1233, 1286
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	956
BciVI	GTATCC	1 cut(s)	1253
BcoDI	GTCTC	4 cut(s)	10, 130, 291, 1259
BfmI	CTRYAG	3 cut(s)	25, 507, 1356
BfoI	RGCGCY	1 cut(s)	1020
BfrI	CTTAAG	1 cut(s)	250
BfuAI	ACCTGC	2 cut(s)	1098, 1349
BfuI	GTATCC	1 cut(s)	1253
BglII	AGATCT	1 cut(s)	1073
BisI	GCNGC	5 cut(s)	28, 354, 534, 1060, 1356
BlsI	GCNGC	5 cut(s)	29, 355, 535, 1061, 1357
Bme1390I	CCNGG	1 cut(s)	956
Bme18I	GGWCC	1 cut(s)	952
BmgT120I	GGNCC	5 cut(s)	90, 406, 599, 952, 1198
BmiI	GGNNCC	1 cut(s)	1199
BmrFI	CCNGG	1 cut(s)	956
BmsI	GCATC	3 cut(s)	457, 646, 1160
BpiI	GAAGAC	1 cut(s)	863
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	1 cut(s)	666
Bpu10I	CCTNAGC	1 cut(s)	1137
BpuEI	CTTGAG	1 cut(s)	375
BsaHI	GRCGYC	2 cut(s)	900, 1268
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	270, 745
BsaWI	WCCGGW	2 cut(s)	181, 1023
BsaXI	ACNNNNNCTCC	2 cut(s)	1167, 1197
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	4 cut(s)	537, 570, 1048, 1242
Bse3DI	GCAATG	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	1023
BseBI	CCWGG	1 cut(s)	956
BseDI	CCNNGG	2 cut(s)	270, 745
BseGI	GGATG	5 cut(s)	379, 693, 1225, 1252, 1297
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	4 cut(s)	5, 697, 1091, 1128
BseNI	ACTGG	4 cut(s)	537, 570, 1048, 1242
BseRI	GAGGAG	2 cut(s)	1154, 1188
BseXI	GCAGC	5 cut(s)	39, 365, 520, 1046, 1342
BsgI	GTGCAG	1 cut(s)	1045
BshFI	GGCC	4 cut(s)	91, 407, 601, 1200
BsiSI	CCGG	2 cut(s)	182, 1024
BslFI	GGGAC	3 cut(s)	576, 727, 835
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	4 cut(s)	10, 130, 291, 1259
BsmBI	CGTCTC	1 cut(s)	1259
BsmFI	GGGAC	3 cut(s)	576, 727, 835
BsnI	GGCC	4 cut(s)	91, 407, 601, 1200
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	1023
Bsp143I	GATC	2 cut(s)	568, 1073
BspACI	CCGC	3 cut(s)	275, 835, 981
BspANI	GGCC	4 cut(s)	91, 407, 601, 1200
BspCNI	CTCAG	4 cut(s)	6, 696, 1090, 1129
BspEI	TCCGGA	1 cut(s)	1023
BspLI	GGNNCC	1 cut(s)	1199
BspMAI	CTGCAG	2 cut(s)	29, 1360
BspMI	ACCTGC	2 cut(s)	1098, 1349
BspPI	GGATC	1 cut(s)	576
BspTI	CTTAAG	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	4 cut(s)	537, 570, 1048, 1242
BssECI	CCNNGG	2 cut(s)	270, 745
BssMI	GATC	2 cut(s)	568, 1073
BssNAI	GTATAC	1 cut(s)	102
BssNI	GRCGYC	2 cut(s)	900, 1268
BssSI	CACGAG	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	745
Bst1107I	GTATAC	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	726
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	6 cut(s)	78, 124, 166, 318, 1054, 1340
Bst6I	CTCTTC	7 cut(s)	250, 489, 522, 915, 915, 942, 1062
BstACI	GRCGYC	2 cut(s)	900, 1268
BstAFI	CTTAAG	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	979, 1083
BstDEI	CTNAG	5 cut(s)	14, 683, 1077, 1103, 1137
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	5 cut(s)	379, 693, 1225, 1252, 1297
BstH2I	RGCGCY	1 cut(s)	1020
BstHHI	GCGC	1 cut(s)	1019
BstKTI	GATC	2 cut(s)	571, 1076
BstMAI	GTCTC	4 cut(s)	10, 130, 291, 1259
BstMBI	GATC	2 cut(s)	568, 1073
BstMWI	GCNNNNNNNGC	1 cut(s)	882
BstNI	CCWGG	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	954
BstSFI	CTRYAG	3 cut(s)	25, 507, 1356
BstV1I	GCAGC	5 cut(s)	39, 365, 520, 1046, 1342
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	1 cut(s)	1073
BstYI	RGATCY	1 cut(s)	1073
BstZ17I	GTATAC	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	1253
BsuRI	GGCC	4 cut(s)	91, 407, 601, 1200
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	5 cut(s)	379, 693, 1225, 1252, 1297
BtsIMutI	CAGTG	2 cut(s)	120, 1041
BveI	ACCTGC	2 cut(s)	1098, 1349
Cac8I	GCNNGC	2 cut(s)	979, 1083
CfoI	GCGC	1 cut(s)	1019
Cfr13I	GGNCC	5 cut(s)	90, 406, 599, 952, 1198
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	904
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	5 cut(s)	14, 683, 1077, 1103, 1137
DpnI	GATC	2 cut(s)	570, 1075
DpnII	GATC	2 cut(s)	568, 1073
Eam1104I	CTCTTC	7 cut(s)	250, 489, 522, 915, 915, 942, 1062
EarI	CTCTTC	7 cut(s)	250, 489, 522, 915, 915, 942, 1062
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	1 cut(s)	952
Eco47III	AGCGCT	1 cut(s)	1018
Eco57I	CTGAAG	3 cut(s)	513, 939, 966
EcoO109I	RGGNCCY	1 cut(s)	952
EcoRII	CCWGG	1 cut(s)	954
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	745
Esp3I	CGTCTC	1 cut(s)	1259
FaeI	CATG	1 cut(s)	907
FalI	AAGNNNNNCTT	4 cut(s)	79, 111, 384, 416
FaqI	GGGAC	3 cut(s)	576, 727, 835
FatI	CATG	1 cut(s)	903
FauI	CCCGC	1 cut(s)	974
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	5 cut(s)	28, 354, 534, 1060, 1356
FokI	GGATG	5 cut(s)	386, 700, 1212, 1259, 1304
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	5 cut(s)	28, 354, 534, 1060, 1356
GlaI	GCGC	1 cut(s)	1018
GluI	GCNGC	5 cut(s)	28, 354, 534, 1060, 1356
GsuI	CTGGAG	1 cut(s)	666
HaeII	RGCGCY	1 cut(s)	1020
HaeIII	GGCC	4 cut(s)	91, 407, 601, 1200
HapII	CCGG	2 cut(s)	182, 1024
HhaI	GCGC	1 cut(s)	1019
Hin1I	GRCGYC	2 cut(s)	900, 1268
Hin1II	CATG	1 cut(s)	907
Hin6I	GCGC	1 cut(s)	1017
HinP1I	GCGC	1 cut(s)	1017
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	3 cut(s)	134, 883, 1317
HinfI	GANTC	4 cut(s)	187, 299, 503, 923
HpaI	GTTAAC	1 cut(s)	582
HpaII	CCGG	2 cut(s)	182, 1024
HphI	GGTGA	3 cut(s)	1252, 1307, 1360
Hpy166II	GTNNAC	4 cut(s)	102, 120, 582, 1003
Hpy188I	TCNGA	3 cut(s)	15, 1156, 1273
Hpy188III	TCNNGA	4 cut(s)	392, 524, 685, 1024
Hpy8I	GTNNAC	4 cut(s)	102, 120, 582, 1003
Hpy99I	CGWCG	1 cut(s)	1273
HpyAV	CCTTC	5 cut(s)	608, 782, 1180, 1237, 1339
HpyCH4III	ACNGT	6 cut(s)	78, 124, 166, 318, 1054, 1340
HpyCH4IV	ACGT	3 cut(s)	280, 900, 1268
HpyCH4V	TGCA	9 cut(s)	27, 235, 313, 335, 470, 659, 1062, 1085, 1358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	882
HpyF3I	CTNAG	5 cut(s)	14, 683, 1077, 1103, 1137
HpySE526I	ACGT	3 cut(s)	280, 900, 1268
Hsp92I	GRCGYC	2 cut(s)	900, 1268
Hsp92II	CATG	1 cut(s)	907
HspAI	GCGC	1 cut(s)	1017
Kpn2I	TCCGGA	1 cut(s)	1023
KspAI	GTTAAC	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	568, 1073
LmnI	GCTCC	2 cut(s)	368, 1141
Lsp1109I	GCAGC	5 cut(s)	39, 365, 520, 1046, 1342
LweI	GCATC	3 cut(s)	457, 646, 1160
MaeII	ACGT	3 cut(s)	280, 900, 1268
MaeIII	GTNAC	4 cut(s)	78, 678, 1048, 1348
MalI	GATC	2 cut(s)	570, 1075
MboI	GATC	2 cut(s)	568, 1073
MboII	GAAGA	9 cut(s)	267, 476, 506, 539, 863, 902, 932, 959, 1079
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	1 cut(s)	1073
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	4 cut(s)	551, 762, 777, 1213
MlyI	GAGTC	4 cut(s)	196, 293, 497, 932
MmeI	TCCRAC	1 cut(s)	1251
MroI	TCCGGA	1 cut(s)	1023
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	8 cut(s)	251, 285, 420, 581, 765, 858, 1161, 1314
MspA1I	CMGCKG	2 cut(s)	356, 638
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	2 cut(s)	182, 1024
MspR9I	CCNGG	1 cut(s)	956
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	956
MwoI	GCNNNNNNNGC	1 cut(s)	882
NdeII	GATC	2 cut(s)	568, 1073
NlaIII	CATG	1 cut(s)	907
NlaIV	GGNNCC	1 cut(s)	1199
NmuCI	GTSAC	1 cut(s)	1348
PaqCI	CACCTGC	1 cut(s)	1349
PdmI	GAANNNNTTC	1 cut(s)	446
PkrI	GCNGC	5 cut(s)	29, 355, 535, 1061, 1357
PleI	GAGTC	4 cut(s)	195, 293, 497, 931
PpsI	GAGTC	4 cut(s)	195, 293, 497, 931
PpuMI	RGGWCCY	1 cut(s)	952
Psp5II	RGGWCCY	1 cut(s)	952
Psp6I	CCWGG	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	954
PspN4I	GGNNCC	1 cut(s)	1199
PspPI	GGNCC	5 cut(s)	90, 406, 599, 952, 1198
PspPPI	RGGWCCY	1 cut(s)	952
PstI	CTGCAG	2 cut(s)	29, 1360
PsuI	RGATCY	1 cut(s)	1073
PvuII	CAGCTG	2 cut(s)	356, 638
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	8 cut(s)	251, 285, 420, 581, 765, 858, 1161, 1314
SatI	GCNGC	5 cut(s)	28, 354, 534, 1060, 1356
Sau3AI	GATC	2 cut(s)	568, 1073
Sau96I	GGNCC	5 cut(s)	90, 406, 599, 952, 1198
SchI	GAGTC	4 cut(s)	196, 293, 497, 932
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	3 cut(s)	457, 646, 1160
SfcI	CTRYAG	3 cut(s)	25, 507, 1356
SinI	GGWCC	1 cut(s)	952
SmlI	CTYRAG	2 cut(s)	250, 390
SmoI	CTYRAG	2 cut(s)	250, 390
Sse9I	AATT	4 cut(s)	551, 762, 777, 1213
SsiI	CCGC	3 cut(s)	275, 835, 981
StyD4I	CCNGG	1 cut(s)	954
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	6 cut(s)	78, 124, 166, 318, 1054, 1340
TaiI	ACGT	3 cut(s)	283, 903, 1271
TaqI	TCGA	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	4 cut(s)	551, 762, 777, 1213
Tru1I	TTAA	8 cut(s)	251, 285, 420, 581, 765, 858, 1161, 1314
Tru9I	TTAA	8 cut(s)	251, 285, 420, 581, 765, 858, 1161, 1314
TscAI	CASTG	2 cut(s)	127, 1048
TseFI	GTSAC	1 cut(s)	1348
TseI	GCWGC	5 cut(s)	27, 353, 533, 1059, 1355
Tsp45I	GTSAC	1 cut(s)	1348
TspDTI	ATGAA	1 cut(s)	1358
TspGWI	ACGGA	1 cut(s)	1218
TspRI	CASTG	2 cut(s)	127, 1048
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	952
XmiI	GTMKAC	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	446
ZraI	GACGTC	2 cut(s)	901, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.