Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005510

Physical Location & Seq

Genomic Coordinates Forward (+)

147590 .. 150955

Gene Structure 3366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00190.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAGCTTCATCTTAAACCTCTGTGCAGCTCAACAGCTCTCTTATCCCCCAGAGCTTCCAGCAGTACTAGACTAGCACAGTTACCGCGCAAGTCCACCTCCTCCTCCTCCTCTAGTGCTTGTCGTATATTTTCTTTCTCCACTACGCTTTCGACACCTTGTCGATTCCCTCCTTCTGTTTTGTTTGCGACTCCGGAGAGTCAAGTAAGCGCGGAGGAAAGAGAATGGGCAATGCAAGATTTTTATACATTGAGAAGAGAGGTGGAAATTGCGGCAGAACGTGTTCAAGAGATAAGAGCTTCGGCTTGTCTGGAACAGTTGGAAAAAGAAGTTGCCGAGTTGGAATCCAAAGCAGCTGATACCTCCTTTTGGGATGATCGTGCTTTAGCTCAAGAGAACCTTTTGGCCCTCACTGATGTCAAAGACCGAATAAAATCGCTTAACGACTTTAAATCACAGGTTGAAGATGCAGAAACAATAGTCAAGCTAACTGAAGAGATGGACTCCACAGATAATGCACTTCTTGAAGAGGCTGCCAGTATCATCAAGGAATTGAACAAGGCAATGGATCGGTTTGAGTTAACTCAACTTCTTTCAGGGCCTTATGACAAAGAAGGTGCTGTTATTTCTATTACAGCCGGTGCTGGAGGTACTGACGCCCAGGATTGGGCTGAAATGTTACTCAGGATGTATATGAGGTGGGGAGAAAAGCAGAGATACAAAACTCGCGTGGTTGAGAAATCCCCAGGAGAGGAAGCTGGAATTAAGTCAGCGACACTCGAAGTTGAAGGTCGCTATGCTTATGGTTATTTGTCCGGGGAGAAGGGCACACACCGCATTGTACGACAGTCTCCTTTTAATGCCAAAGGTCTTCGCCAGACAAGCTTCTCAGGTGTGGAAGTGATGCCTCTCCTACCTGAGGAATCACTGAAAGTTGAAATACCTGAAGAAGACCTGGAGATAACCACTTCAAGGGCAGGCGGGAAAGGAGGTCAGAATGTGAATAAAATTGAAAGTGCTGTCCGGATTACTCACATCCCCACTGGTGTTACTGTTCGCTGCACAGAAGAGAGATCCCAGCTTGCAAACAGAATAAAGGCTCTAAGCAGGTTGAAAGCAAAGCTGTTGGTGATAGCCGAGGAGCAACGAGCATCAGAAATTAAGCAAATACGAGGAGATGCAGTGAAGGCAGAGTGGGGGCAACAAATAAGGAACTATGTGTTCCATCCGTATAAACTCGTCAAGGATGTAAGGACAGGATATGAGACATCTGATATCACTTCTGTGATGGACGGTGATTTGGAGCCTTATATCAAAGCCTACCTCAAACATAAATACAGTATGAAAATCAGTGCATCAAGTCAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006415 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

457

Amino Acids

50.88

Weight (kDa)

5.72

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	107 - 292	7.7e-49	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36170 AT5G36170 AT5G36170 AT5G36170
fragaria_vesca	FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190
malus_domestica	MD04G1247400.v1.1 MD12G1263000.v1.1
prunus_persica	Prupe.6G363800_v2.0.a1 Prupe.6G363800_v2.0.a1
pyrus_communis	pycom04g21810
rosa_chinensis	RchiOBHm_Chr3g0447561
rosa_laevigata	RLG00000025989
rosa_multiflora	Rmu_co8330713.1_g000001 Rmu_co8444065.1_g000001 Rmu_sc0031754.1_g000001 Rmu_sc0037294.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425770
rosa_rugosa	Rorug02G0602900
rosa_samantha	Rh3AG003200 Rh3BG002700 Rh3CG003000 Rh3DG003000
rosa_wichuraiana	Rw3G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1098
AccII	CGCG	3 cut(s)	88, 212, 729
AccIII	TCCGGA	2 cut(s)	193, 1023
AciI	CCGC	5 cut(s)	86, 212, 272, 835, 981
AclWI	GGATC	2 cut(s)	576, 1068
AcuI	CTGAAG	2 cut(s)	513, 966
AcyI	GRCGYC	1 cut(s)	657
AfaI	GTAC	3 cut(s)	67, 652, 843
AfiI	CCNNNNNNNGG	6 cut(s)	369, 666, 667, 751, 919, 972
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	9 cut(s)	287, 464, 527, 556, 788, 938, 972, 1013, 1114
AhdI	GACNNNNNGTC	1 cut(s)	159
AjnI	CCWGG	3 cut(s)	660, 745, 954
AleI	CACNNNNGTG	1 cut(s)	1283
Alw26I	GTCTC	2 cut(s)	855, 1259
AlwI	GGATC	2 cut(s)	576, 1068
Aor13HI	TCCGGA	2 cut(s)	193, 1023
AoxI	GGCC	2 cut(s)	405, 599
ApeKI	GCWGC	4 cut(s)	27, 353, 533, 1059
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	90, 212
AspS9I	GGNCC	2 cut(s)	406, 599
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	2 cut(s)	1141, 1307
AxyI	CCTNAGG	1 cut(s)	918
BaeGI	GKGCMC	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	863, 957
BbvI	GCAGC	4 cut(s)	39, 365, 520, 1046
BccI	CCATC	3 cut(s)	493, 1233, 1282
BciT130I	CCWGG	3 cut(s)	662, 747, 956
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	855, 1259
BfaI	CTAG	4 cut(s)	69, 74, 114, 1369
BfuAI	ACCTGC	1 cut(s)	1098
BisI	GCNGC	5 cut(s)	28, 273, 354, 534, 1060
BlsI	GCNGC	5 cut(s)	29, 274, 355, 535, 1061
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	4 cut(s)	662, 747, 817, 956
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	406, 599
BmiI	GGNNCC	1 cut(s)	1305
BmrFI	CCNGG	4 cut(s)	662, 747, 817, 956
BmsI	GCATC	5 cut(s)	457, 894, 1160, 1168, 1364
BpiI	GAAGAC	2 cut(s)	863, 957
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	2 cut(s)	666, 977
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	817
BsaHI	GRCGYC	1 cut(s)	657
BsaJI	CCNNGG	4 cut(s)	660, 745, 816, 1137
BsaWI	WCCGGW	2 cut(s)	193, 1023
BsaXI	ACNNNNNCTCC	2 cut(s)	1167, 1197
Bsc4I	CCNNNNNNNGG	6 cut(s)	369, 666, 667, 751, 919, 972
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	537, 1048
Bse21I	CCTNAGG	1 cut(s)	918
Bse3DI	GCAATG	2 cut(s)	237, 570
BseAI	TCCGGA	2 cut(s)	193, 1023
BseBI	CCWGG	3 cut(s)	662, 747, 956
BseDI	CCNNGG	4 cut(s)	660, 745, 816, 1137
BseGI	GGATG	5 cut(s)	379, 693, 1035, 1225, 1252
BseLI	CCNNNNNNNGG	6 cut(s)	369, 666, 667, 751, 919, 972
BseMI	GCAATG	2 cut(s)	237, 570
BseMII	CTCAG	3 cut(s)	697, 903, 909
BseNI	ACTGG	2 cut(s)	537, 1048
BseRI	GAGGAG	6 cut(s)	91, 94, 97, 100, 1154, 1188
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	4 cut(s)	39, 365, 520, 1046
BseYI	CCCAGC	1 cut(s)	1077
BsgI	GTGCAG	2 cut(s)	46, 1045
Bsh1236I	CGCG	3 cut(s)	88, 212, 729
BshFI	GGCC	2 cut(s)	407, 601
BsiSI	CCGG	4 cut(s)	194, 639, 816, 1024
BslI	CCNNNNNNNGG	6 cut(s)	369, 666, 667, 751, 919, 972
BsmAI	GTCTC	2 cut(s)	855, 1259
BsnI	GGCC	2 cut(s)	407, 601
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp13I	TCCGGA	2 cut(s)	193, 1023
Bsp143I	GATC	3 cut(s)	376, 568, 1073
BspACI	CCGC	5 cut(s)	86, 212, 272, 835, 981
BspANI	GGCC	2 cut(s)	407, 601
BspCNI	CTCAG	3 cut(s)	696, 902, 910
BspEI	TCCGGA	2 cut(s)	193, 1023
BspFNI	CGCG	3 cut(s)	88, 212, 729
BspLI	GGNNCC	1 cut(s)	1305
BspMI	ACCTGC	1 cut(s)	1098
BspPI	GGATC	2 cut(s)	576, 1068
BsrDI	GCAATG	2 cut(s)	237, 570
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	2 cut(s)	537, 1048
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	4 cut(s)	660, 745, 816, 1137
BssMI	GATC	3 cut(s)	376, 568, 1073
BssNI	GRCGYC	1 cut(s)	657
Bst2UI	CCWGG	3 cut(s)	662, 747, 956
Bst4CI	ACNGT	6 cut(s)	81, 318, 849, 1054, 1295, 1340
Bst6I	CTCTTC	4 cut(s)	250, 489, 522, 1062
BstACI	GRCGYC	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	979, 1083
BstDEI	CTNAG	4 cut(s)	683, 889, 918, 1103
BstENI	CCTNNNNNAGG	1 cut(s)	917
BstF5I	GGATG	5 cut(s)	379, 693, 1035, 1225, 1252
BstFNI	CGCG	3 cut(s)	88, 212, 729
BstHHI	GCGC	2 cut(s)	90, 212
BstKTI	GATC	3 cut(s)	379, 571, 1076
BstMAI	GTCTC	2 cut(s)	855, 1259
BstMBI	GATC	3 cut(s)	376, 568, 1073
BstMWI	GCNNNNNNNGC	3 cut(s)	834, 882, 1187
BstNI	CCWGG	3 cut(s)	662, 747, 956
BstSCI	CCNGG	4 cut(s)	660, 745, 815, 954
BstSLI	GKGCMC	1 cut(s)	830
BstUI	CGCG	3 cut(s)	88, 212, 729
BstV1I	GCAGC	4 cut(s)	39, 365, 520, 1046
BstV2I	GAAGAC	2 cut(s)	863, 957
BstX2I	RGATCY	1 cut(s)	1073
BstYI	RGATCY	1 cut(s)	1073
Bsu36I	CCTNAGG	1 cut(s)	918
BsuRI	GGCC	2 cut(s)	407, 601
BtsCI	GGATG	5 cut(s)	379, 693, 1035, 1225, 1252
BtsI	GCAGTG	1 cut(s)	1188
BtsIMutI	CAGTG	5 cut(s)	411, 926, 1041, 1188, 1357
BveI	ACCTGC	1 cut(s)	1098
Cac8I	GCNNGC	2 cut(s)	979, 1083
CfoI	GCGC	2 cut(s)	90, 212
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	406, 599
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	3 cut(s)	66, 651, 842
CviQI	GTAC	3 cut(s)	66, 651, 842
DdeI	CTNAG	4 cut(s)	683, 889, 918, 1103
DpnI	GATC	3 cut(s)	378, 570, 1075
DpnII	GATC	3 cut(s)	376, 568, 1073
DraI	TTTAAA	1 cut(s)	451
DriI	GACNNNNNGTC	1 cut(s)	159
Eam1104I	CTCTTC	4 cut(s)	250, 489, 522, 1062
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EarI	CTCTTC	4 cut(s)	250, 489, 522, 1062
Eco32I	GATATC	1 cut(s)	1276
Eco57I	CTGAAG	2 cut(s)	513, 966
Eco81I	CCTNAGG	1 cut(s)	918
EcoNI	CCTNNNNNAGG	1 cut(s)	917
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	660, 745, 954
EcoRV	GATATC	1 cut(s)	1276
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FauI	CCCGC	1 cut(s)	974
Fnu4HI	GCNGC	5 cut(s)	28, 273, 354, 534, 1060
FokI	GGATG	5 cut(s)	386, 700, 1022, 1212, 1259
Fsp4HI	GCNGC	5 cut(s)	28, 273, 354, 534, 1060
FspBI	CTAG	4 cut(s)	69, 74, 114, 1369
GlaI	GCGC	2 cut(s)	89, 211
GluI	GCNGC	5 cut(s)	28, 273, 354, 534, 1060
GsaI	CCCAGC	1 cut(s)	1081
GsuI	CTGGAG	2 cut(s)	666, 977
HaeIII	GGCC	2 cut(s)	407, 601
HapII	CCGG	4 cut(s)	194, 639, 816, 1024
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	2 cut(s)	90, 212
Hin1I	GRCGYC	1 cut(s)	657
Hin6I	GCGC	2 cut(s)	88, 210
HinP1I	GCGC	2 cut(s)	88, 210
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	883
HinfI	GANTC	6 cut(s)	165, 190, 199, 344, 503, 923
HpaI	GTTAAC	1 cut(s)	582
HpaII	CCGG	4 cut(s)	194, 639, 816, 1024
HphI	GGTGA	2 cut(s)	1141, 1307
Hpy166II	GTNNAC	2 cut(s)	96, 582
Hpy188I	TCNGA	3 cut(s)	996, 1156, 1273
Hpy188III	TCNNGA	7 cut(s)	194, 287, 311, 392, 524, 685, 1024
Hpy8I	GTNNAC	2 cut(s)	96, 582
HpyAV	CCTTC	5 cut(s)	183, 608, 782, 817, 1180
HpyCH4III	ACNGT	6 cut(s)	81, 318, 849, 1054, 1295, 1340
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	8 cut(s)	27, 235, 470, 518, 1062, 1085, 1181, 1355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	834, 882, 1187
HpyF3I	CTNAG	4 cut(s)	683, 889, 918, 1103
HpySE526I	ACGT	1 cut(s)	280
Hsp92I	GRCGYC	1 cut(s)	657
HspAI	GCGC	2 cut(s)	88, 210
Kpn2I	TCCGGA	2 cut(s)	193, 1023
KspAI	GTTAAC	1 cut(s)	582
Kzo9I	GATC	3 cut(s)	376, 568, 1073
LmnI	GCTCC	3 cut(s)	4, 1141, 1303
Lsp1109I	GCAGC	4 cut(s)	39, 365, 520, 1046
LweI	GCATC	5 cut(s)	457, 894, 1160, 1168, 1364
MaeI	CTAG	4 cut(s)	69, 74, 114, 1369
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	81, 678, 1048
MalI	GATC	3 cut(s)	378, 570, 1075
MboI	GATC	3 cut(s)	376, 568, 1073
MboII	GAAGA	8 cut(s)	267, 476, 506, 539, 863, 959, 962, 1079
MflI	RGATCY	1 cut(s)	1073
MhlI	GDGCHC	1 cut(s)	830
MluCI	AATT	5 cut(s)	267, 551, 762, 1008, 1158
MlyI	GAGTC	3 cut(s)	184, 208, 497
MmeI	TCCRAC	2 cut(s)	300, 321
MroI	TCCGGA	2 cut(s)	193, 1023
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	7 cut(s)	15, 441, 450, 581, 765, 858, 1161
MslI	CAYNNNNRTG	1 cut(s)	1283
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	4 cut(s)	194, 639, 816, 1024
MspR9I	CCNGG	4 cut(s)	662, 747, 817, 956
MvaI	CCWGG	3 cut(s)	662, 747, 956
MvnI	CGCG	3 cut(s)	88, 212, 729
MwoI	GCNNNNNNNGC	3 cut(s)	834, 882, 1187
NciI	CCSGG	1 cut(s)	817
NdeII	GATC	3 cut(s)	376, 568, 1073
NlaIV	GGNNCC	1 cut(s)	1305
NmeAIII	GCCGAG	2 cut(s)	361, 1162
OliI	CACNNNNGTG	1 cut(s)	1283
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	165, 344, 923
PkrI	GCNGC	5 cut(s)	29, 274, 355, 535, 1061
PleI	GAGTC	3 cut(s)	184, 207, 497
PpsI	GAGTC	3 cut(s)	184, 207, 497
Psp6I	CCWGG	3 cut(s)	660, 745, 954
PspFI	CCCAGC	1 cut(s)	1077
PspGI	CCWGG	3 cut(s)	660, 745, 954
PspN4I	GGNNCC	1 cut(s)	1305
PspPI	GGNCC	2 cut(s)	406, 599
PsuI	RGATCY	1 cut(s)	1073
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	3 cut(s)	67, 652, 843
RsaNI	GTAC	3 cut(s)	66, 651, 842
RseI	CAYNNNNRTG	1 cut(s)	1283
SaqAI	TTAA	7 cut(s)	15, 441, 450, 581, 765, 858, 1161
SatI	GCNGC	5 cut(s)	28, 273, 354, 534, 1060
Sau3AI	GATC	3 cut(s)	376, 568, 1073
Sau96I	GGNCC	2 cut(s)	406, 599
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	3 cut(s)	184, 208, 497
ScrFI	CCNGG	4 cut(s)	662, 747, 817, 956
SduI	GDGCHC	1 cut(s)	830
SfaNI	GCATC	5 cut(s)	457, 894, 1160, 1168, 1364
SmiMI	CAYNNNNRTG	1 cut(s)	1283
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	5 cut(s)	267, 551, 762, 1008, 1158
SsiI	CCGC	5 cut(s)	86, 212, 272, 835, 981
SspMI	CTAG	4 cut(s)	69, 74, 114, 1369
StyD4I	CCNGG	4 cut(s)	660, 745, 815, 954
TaaI	ACNGT	6 cut(s)	81, 318, 849, 1054, 1295, 1340
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	3 cut(s)	152, 163, 780
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	5 cut(s)	267, 551, 762, 1008, 1158
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	165, 344, 923
Tru1I	TTAA	7 cut(s)	15, 441, 450, 581, 765, 858, 1161
Tru9I	TTAA	7 cut(s)	15, 441, 450, 581, 765, 858, 1161
TscAI	CASTG	5 cut(s)	418, 933, 1048, 1188, 1357
TseI	GCWGC	4 cut(s)	27, 353, 533, 1059
TspDTI	ATGAA	1 cut(s)	1358
TspGWI	ACGGA	1 cut(s)	1218
TspRI	CASTG	5 cut(s)	418, 933, 1048, 1188, 1357
XagI	CCTNNNNNAGG	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	4 cut(s)	69, 74, 114, 1369
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.