Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8330713.1

Orthogroup ID

OG0005510

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 947

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8330713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggaggttcatctaaaacctctatgcagctcaacagctgtcttatcccccaaagcttccaatactagactaccacagttaccacgcaagtccacttcctcttgtgcttctcgtatatcctacaatttacctttctccactacgctttccacaccttctagattctctccttctgttttatttgcgacaccggagagtagtcaagtaagcgcggaagtcaacaccaacgaaagagaatgggcaatgcaagatttctatacattgagaagggaggtagaaattgcggcaggacgtgttgaagagataagagcttccgcttgtctggaacagttggaaaaagaagttgccgagttggaatccgaagcagctgatagctccttttgggatgatcgagctaaggctcaagagaaccttttggccctcactgatgtcaaagacagaataaaatcgcttactcacttcaaaacacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006415 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

157

Amino Acids

17.54

Weight (kDa)

5.5

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36170 AT5G36170 AT5G36170 AT5G36170
fragaria_vesca	FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190
malus_domestica	MD04G1247400.v1.1 MD12G1263000.v1.1
prunus_persica	Prupe.6G363800_v2.0.a1 Prupe.6G363800_v2.0.a1
pyrus_communis	pycom04g21810
rosa_chinensis	RchiOBHm_Chr3g0447561
rosa_laevigata	RLG00000025989
rosa_multiflora	Rmu_co8330713.1_g000001 Rmu_co8444065.1_g000001 Rmu_sc0031754.1_g000001 Rmu_sc0037294.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425770
rosa_rugosa	Rorug02G0602900
rosa_samantha	Rh3AG003200 Rh3BG002700 Rh3CG003000 Rh3DG003000
rosa_wichuraiana	Rw3G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	3 cut(s)	212, 284, 315
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	299, 463
AjiI	CACGTC	1 cut(s)	293
AluBI	AGCT	7 cut(s)	30, 38, 56, 311, 368, 375, 395
AluI	AGCT	7 cut(s)	30, 38, 56, 311, 368, 375, 395
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	27, 365
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	39, 377
BfaI	CTAG	2 cut(s)	66, 159
BisI	GCNGC	3 cut(s)	28, 285, 366
BlsI	GCNGC	3 cut(s)	29, 286, 367
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	39, 377
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	191
BsnI	GGCC	1 cut(s)	419
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	3 cut(s)	212, 284, 315
BspANI	GGCC	1 cut(s)	419
BspFNI	CGCG	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	249
BssMI	GATC	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	78, 330
Bst6I	CTCTTC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	39, 377
BsuRI	GGCC	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	423
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	418
CviJI	RGCY	9 cut(s)	30, 38, 56, 311, 368, 375, 395, 401, 419
CviKI_1	RGCY	9 cut(s)	30, 38, 56, 311, 368, 375, 395, 401, 419
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
FaiI	YATR	3 cut(s)	25, 116, 258
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
Fnu4HI	GCNGC	3 cut(s)	28, 285, 366
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	28, 285, 366
FspBI	CTAG	2 cut(s)	66, 159
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	28, 285, 366
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	162, 356
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	93, 220
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	3 cut(s)	159, 323, 404
Hpy8I	GTNNAC	2 cut(s)	93, 220
HpyAV	CCTTC	3 cut(s)	165, 180, 261
HpyCH4III	ACNGT	2 cut(s)	78, 330
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	27, 247
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	292
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	3 cut(s)	204, 273, 308
Lsp1109I	GCAGC	2 cut(s)	39, 377
MaeI	CTAG	2 cut(s)	66, 159
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	1 cut(s)	311
MluCI	AATT	2 cut(s)	124, 279
MmeI	TCCRAC	2 cut(s)	312, 333
MnlI	CCTC	4 cut(s)	30, 109, 265, 431
MspA1I	CMGCKG	2 cut(s)	38, 368
MspI	CCGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	212
NdeII	GATC	1 cut(s)	388
NmeAIII	GCCGAG	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	162, 356
PkrI	GCNGC	3 cut(s)	29, 286, 367
PspPI	GGNCC	1 cut(s)	418
PvuII	CAGCTG	2 cut(s)	38, 368
SatI	GCNGC	3 cut(s)	28, 285, 366
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	2 cut(s)	124, 279
SsiI	CCGC	3 cut(s)	212, 284, 315
SspMI	CTAG	2 cut(s)	66, 159
TaaI	ACNGT	2 cut(s)	78, 330
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	391
TasI	AATT	2 cut(s)	124, 279
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	162, 356
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	2 cut(s)	27, 365
TspRI	CASTG	1 cut(s)	430
XbaI	TCTAGA	1 cut(s)	158
XspI	CTAG	2 cut(s)	66, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.