Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005510

Physical Location & Seq

Genomic Coordinates Reverse (-)

49664932 .. 49668572

Gene Structure 3641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGAGGTTCATCTAAAACCTCTATGCAGCTCAACAGCCATCTTATCCCCCAAAGCTTCCAATACTAGACTACCACAGTTACCACGCAAGTCCACTTCCTCTTCTGCTTCTCGTATATCCTACAATTTACCCTTCTCCACTACGCTTTCCACACCTTCTAGATTCTCTCCTTCAGTTTTATTTGCGACACCGGAGAGTCAAGTAAGCGCGGAAGTCATCACCAACGAAAGAGAATGGGCAATGCAAGATTTCTATACATTGAGAAGGGAGGTAGAAATTGCGGCAGGGCGTGTCGAAGAGATAAGAGCTTCCGCTTGTCTGGAACAGTTGGAAAAAGAAGTTGCCGAGTTGGAATCCAAAGCAGCTGATAGCTCCTTTTGGGATGATCGAGCTAAGGCTCAAGAGAACCTTTTGGCCCTCACTGATGTTAAAGACAGAATAAAATCGCTTACTCACTTCAAAACACAGGTTGAAGATGCAGAAACAATAGTCAAGCTAACTGAAGAGATGGACTCCACAGATAATGCACTTCTTGAAGAGGCTGCCAGCATCATCAAGGAATTGAACAAGGGAATGGATCGGTTTGAGTTAACTCAACTTCTTTCAGGGCCTTATGACAAGGAAGGTGCTGTTATTTCTGTTACAGCCGGTGCTGGAGGCACTGACGCACAGGATTGGGCTGAAATGTTACTCAGGATGTATATGAGGTGGGGAGAAAAGCAGAGGTACAAAACTCGAGTGGTTGAGAGATCCCCAGGAGAGGAAGCTGGAATTAAGTCGGCGACACTCGAAGTTGAAGGTCGTTATGCTTATGGTTATTTGTCTGGGGAGAAAGGCACACACCGCATTGTACGACAGTCTCCTTTTAATGCCAAAGGTCTTCGCCAGACAAGCTTCTCTGGTGTGGAAGTGATGCCTCTCCTACCTGAGGAATCACTGAATGTTGAAATACCTGAAGAAGACCTGGAGATAACCACTTCAAGGGCAGGTGGGAAAGGAGGTCAGAATGTGAATAAAATTGAAAGTGCTGTCCGGATTACTCACATCCCCACTGGTGTTACTGTTCGCTGCACAGAAGAGAGATCCCAGCTTGCAAACAGAATAAAGGCTCTAAGCAGGTTGAAAGCGAAGCTGTTGGTGATAGCTGAGGAGCAACGAGCATCGGAAATTAAGCAAATACGAGGAGATGCAGTGAAGGCAGAGTGGGGGCAACAAATAAGGAACTATGTGTTCCATCCGTACAAACTCGTCAAGGATGTAAGGACAGGATATGAGACATCTGATATCACTTCTGTGATGGACGGTGATTTGGAGCCTTACATCAAAGCCTACCTCAAACATAAATACAGTATGAAAGTCAGCGCATCAAGTAAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006415 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

460

Amino Acids

51.2

Weight (kDa)

6.05

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	110 - 302	2e-51	PCRF domain
RF-1	PF00472	313 - 421	2.8e-36	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36170 AT5G36170 AT5G36170 AT5G36170
fragaria_vesca	FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190
malus_domestica	MD04G1247400.v1.1 MD12G1263000.v1.1
prunus_persica	Prupe.6G363800_v2.0.a1 Prupe.6G363800_v2.0.a1
pyrus_communis	pycom04g21810
rosa_chinensis	RchiOBHm_Chr3g0447561
rosa_laevigata	RLG00000025989
rosa_multiflora	Rmu_co8330713.1_g000001 Rmu_co8444065.1_g000001 Rmu_sc0031754.1_g000001 Rmu_sc0037294.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425770
rosa_rugosa	Rorug02G0602900
rosa_samantha	Rh3AG003200 Rh3BG002700 Rh3CG003000 Rh3DG003000
rosa_wichuraiana	Rw3G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	977
Acc36I	ACCTGC	2 cut(s)	977, 1107
AccII	CGCG	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	1032
AciI	CCGC	4 cut(s)	209, 281, 312, 844
AclWI	GGATC	3 cut(s)	585, 744, 1077
AcuI	CTGAAG	3 cut(s)	156, 522, 975
AfaI	GTAC	3 cut(s)	728, 852, 1241
AfiI	CCNNNNNNNGG	3 cut(s)	760, 928, 981
AgsI	TTSAA	9 cut(s)	460, 473, 536, 565, 797, 947, 981, 1022, 1123
AjnI	CCWGG	2 cut(s)	754, 963
AleI	CACNNNNGTG	1 cut(s)	1292
Alw26I	GTCTC	2 cut(s)	864, 1268
AlwI	GGATC	3 cut(s)	585, 744, 1077
Ama87I	CYCGRG	1 cut(s)	735
Aor13HI	TCCGGA	1 cut(s)	1032
AoxI	GGCC	2 cut(s)	414, 608
ApeKI	GCWGC	4 cut(s)	27, 362, 542, 1068
AspLEI	GCGC	2 cut(s)	209, 1364
AspS9I	GGNCC	2 cut(s)	415, 608
AsuHPI	GGTGA	3 cut(s)	211, 1150, 1316
AvaI	CYCGRG	1 cut(s)	735
AxyI	CCTNAGG	1 cut(s)	927
BbsI	GAAGAC	2 cut(s)	872, 966
BbvCI	CCTCAGC	1 cut(s)	1146
BbvI	GCAGC	4 cut(s)	39, 374, 529, 1055
BccI	CCATC	4 cut(s)	47, 502, 1242, 1291
BciT130I	CCWGG	2 cut(s)	756, 965
BcoDI	GTCTC	2 cut(s)	864, 1268
BfaI	CTAG	3 cut(s)	66, 159, 1378
BfuAI	ACCTGC	2 cut(s)	977, 1107
BisI	GCNGC	5 cut(s)	28, 282, 363, 543, 1069
BlsI	GCNGC	5 cut(s)	29, 283, 364, 544, 1070
Bme1390I	CCNGG	2 cut(s)	756, 965
BmeT110I	CYCGRG	1 cut(s)	735
BmgT120I	GGNCC	2 cut(s)	415, 608
BmiI	GGNNCC	1 cut(s)	1314
BmrFI	CCNGG	2 cut(s)	756, 965
BmsI	GCATC	6 cut(s)	466, 558, 903, 1169, 1177, 1373
BpiI	GAAGAC	2 cut(s)	872, 966
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	2 cut(s)	675, 986
Bpu10I	CCTNAGC	2 cut(s)	393, 1146
BpuEI	CTTGAG	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	754
BsaWI	WCCGGW	2 cut(s)	190, 1032
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	3 cut(s)	760, 928, 981
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	1057
Bse21I	CCTNAGG	1 cut(s)	927
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	1032
BseBI	CCWGG	2 cut(s)	756, 965
BseDI	CCNNGG	1 cut(s)	754
BseGI	GGATG	5 cut(s)	388, 702, 1044, 1234, 1261
BseLI	CCNNNNNNNGG	3 cut(s)	760, 928, 981
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	706, 918, 1137
BseNI	ACTGG	1 cut(s)	1057
BseRI	GAGGAG	2 cut(s)	1163, 1197
BseXI	GCAGC	4 cut(s)	39, 374, 529, 1055
BseYI	CCCAGC	1 cut(s)	1086
BsgI	GTGCAG	1 cut(s)	1054
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	416, 610
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	3 cut(s)	191, 648, 1033
BslI	CCNNNNNNNGG	3 cut(s)	760, 928, 981
BsmAI	GTCTC	2 cut(s)	864, 1268
BsnI	GGCC	2 cut(s)	416, 610
BsoBI	CYCGRG	1 cut(s)	735
Bsp13I	TCCGGA	1 cut(s)	1032
Bsp143I	GATC	4 cut(s)	385, 577, 749, 1082
BspACI	CCGC	4 cut(s)	209, 281, 312, 844
BspANI	GGCC	2 cut(s)	416, 610
BspCNI	CTCAG	3 cut(s)	705, 919, 1138
BspEI	TCCGGA	1 cut(s)	1032
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	1314
BspMI	ACCTGC	2 cut(s)	977, 1107
BspPI	GGATC	3 cut(s)	585, 744, 1077
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	1057
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	754
BssMI	GATC	4 cut(s)	385, 577, 749, 1082
Bst2UI	CCWGG	2 cut(s)	756, 965
Bst4CI	ACNGT	6 cut(s)	78, 327, 858, 1063, 1304, 1349
Bst6I	CTCTTC	5 cut(s)	106, 291, 498, 531, 1071
BstC8I	GCNNGC	2 cut(s)	547, 1092
BstDEI	CTNAG	5 cut(s)	393, 692, 927, 1112, 1146
BstENI	CCTNNNNNAGG	1 cut(s)	926
BstF5I	GGATG	5 cut(s)	388, 702, 1044, 1234, 1261
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	209, 1364
BstKTI	GATC	4 cut(s)	388, 580, 752, 1085
BstMAI	GTCTC	2 cut(s)	864, 1268
BstMBI	GATC	4 cut(s)	385, 577, 749, 1082
BstMWI	GCNNNNNNNGC	3 cut(s)	843, 891, 1196
BstNI	CCWGG	2 cut(s)	756, 965
BstSCI	CCNGG	2 cut(s)	754, 963
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	4 cut(s)	39, 374, 529, 1055
BstV2I	GAAGAC	2 cut(s)	872, 966
BstX2I	RGATCY	2 cut(s)	749, 1082
BstYI	RGATCY	2 cut(s)	749, 1082
Bsu36I	CCTNAGG	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	416, 610
BtsCI	GGATG	5 cut(s)	388, 702, 1044, 1234, 1261
BtsI	GCAGTG	1 cut(s)	1197
BtsIMutI	CAGTG	5 cut(s)	420, 660, 935, 1050, 1197
BveI	ACCTGC	2 cut(s)	977, 1107
Cac8I	GCNNGC	2 cut(s)	547, 1092
CfoI	GCGC	2 cut(s)	209, 1364
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	2 cut(s)	415, 608
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	3 cut(s)	727, 851, 1240
CviQI	GTAC	3 cut(s)	727, 851, 1240
DdeI	CTNAG	5 cut(s)	393, 692, 927, 1112, 1146
DpnI	GATC	4 cut(s)	387, 579, 751, 1084
DpnII	GATC	4 cut(s)	385, 577, 749, 1082
Eam1104I	CTCTTC	5 cut(s)	106, 291, 498, 531, 1071
EarI	CTCTTC	5 cut(s)	106, 291, 498, 531, 1071
Eco32I	GATATC	1 cut(s)	1285
Eco57I	CTGAAG	3 cut(s)	156, 522, 975
Eco81I	CCTNAGG	1 cut(s)	927
Eco88I	CYCGRG	1 cut(s)	735
EcoNI	CCTNNNNNAGG	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	2 cut(s)	754, 963
EcoRV	GATATC	1 cut(s)	1285
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
Fnu4HI	GCNGC	5 cut(s)	28, 282, 363, 543, 1069
FokI	GGATG	5 cut(s)	395, 709, 1031, 1221, 1268
Fsp4HI	GCNGC	5 cut(s)	28, 282, 363, 543, 1069
FspBI	CTAG	3 cut(s)	66, 159, 1378
GlaI	GCGC	2 cut(s)	208, 1363
GluI	GCNGC	5 cut(s)	28, 282, 363, 543, 1069
GsaI	CCCAGC	1 cut(s)	1090
GsuI	CTGGAG	2 cut(s)	675, 986
HaeIII	GGCC	2 cut(s)	416, 610
HapII	CCGG	3 cut(s)	191, 648, 1033
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	209, 1364
Hin6I	GCGC	2 cut(s)	207, 1362
HinP1I	GCGC	2 cut(s)	207, 1362
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	2 cut(s)	54, 892
HinfI	GANTC	5 cut(s)	162, 196, 353, 512, 932
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	3 cut(s)	191, 648, 1033
HphI	GGTGA	3 cut(s)	211, 1150, 1316
Hpy166II	GTNNAC	2 cut(s)	93, 591
Hpy188I	TCNGA	3 cut(s)	1005, 1165, 1282
Hpy188III	TCNNGA	6 cut(s)	159, 320, 401, 533, 694, 1033
Hpy8I	GTNNAC	2 cut(s)	93, 591
HpyAV	CCTTC	7 cut(s)	142, 165, 180, 258, 617, 791, 1189
HpyCH4III	ACNGT	6 cut(s)	78, 327, 858, 1063, 1304, 1349
HpyCH4V	TGCA	7 cut(s)	27, 244, 479, 527, 1071, 1094, 1190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	843, 891, 1196
HpyF3I	CTNAG	5 cut(s)	393, 692, 927, 1112, 1146
HspAI	GCGC	2 cut(s)	207, 1362
Kpn2I	TCCGGA	1 cut(s)	1032
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	385, 577, 749, 1082
LmnI	GCTCC	3 cut(s)	377, 1150, 1312
Lsp1109I	GCAGC	4 cut(s)	39, 374, 529, 1055
LweI	GCATC	6 cut(s)	466, 558, 903, 1169, 1177, 1373
MaeI	CTAG	3 cut(s)	66, 159, 1378
MaeIII	GTNAC	4 cut(s)	78, 640, 687, 1057
MalI	GATC	4 cut(s)	387, 579, 751, 1084
MboI	GATC	4 cut(s)	385, 577, 749, 1082
MboII	GAAGA	9 cut(s)	93, 308, 485, 515, 548, 872, 968, 971, 1088
MflI	RGATCY	2 cut(s)	749, 1082
MluCI	AATT	6 cut(s)	124, 276, 560, 771, 1017, 1167
MlyI	GAGTC	2 cut(s)	205, 506
MmeI	TCCRAC	2 cut(s)	309, 330
MroI	TCCGGA	1 cut(s)	1032
MseI	TTAA	5 cut(s)	429, 590, 774, 867, 1170
MslI	CAYNNNNRTG	1 cut(s)	1292
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	3 cut(s)	191, 648, 1033
MspR9I	CCNGG	2 cut(s)	756, 965
MvaI	CCWGG	2 cut(s)	756, 965
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	843, 891, 1196
NdeII	GATC	4 cut(s)	385, 577, 749, 1082
NlaIV	GGNNCC	1 cut(s)	1314
NmeAIII	GCCGAG	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	1292
PaeR7I	CTCGAG	1 cut(s)	735
PaqCI	CACCTGC	1 cut(s)	977
PfeI	GAWTC	3 cut(s)	162, 353, 932
PkrI	GCNGC	5 cut(s)	29, 283, 364, 544, 1070
PleI	GAGTC	2 cut(s)	204, 506
PpsI	GAGTC	2 cut(s)	204, 506
Psp6I	CCWGG	2 cut(s)	754, 963
PspFI	CCCAGC	1 cut(s)	1086
PspGI	CCWGG	2 cut(s)	754, 963
PspN4I	GGNNCC	1 cut(s)	1314
PspPI	GGNCC	2 cut(s)	415, 608
PspXI	VCTCGAGB	1 cut(s)	735
PsuI	RGATCY	2 cut(s)	749, 1082
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	3 cut(s)	728, 852, 1241
RsaNI	GTAC	3 cut(s)	727, 851, 1240
RseI	CAYNNNNRTG	1 cut(s)	1292
SaqAI	TTAA	5 cut(s)	429, 590, 774, 867, 1170
SatI	GCNGC	5 cut(s)	28, 282, 363, 543, 1069
Sau3AI	GATC	4 cut(s)	385, 577, 749, 1082
Sau96I	GGNCC	2 cut(s)	415, 608
SchI	GAGTC	2 cut(s)	205, 506
ScrFI	CCNGG	2 cut(s)	756, 965
SfaNI	GCATC	6 cut(s)	466, 558, 903, 1169, 1177, 1373
Sfr274I	CTCGAG	1 cut(s)	735
SlaI	CTCGAG	1 cut(s)	735
SmiMI	CAYNNNNRTG	1 cut(s)	1292
SmlI	CTYRAG	2 cut(s)	399, 735
SmoI	CTYRAG	2 cut(s)	399, 735
Sse9I	AATT	6 cut(s)	124, 276, 560, 771, 1017, 1167
SsiI	CCGC	4 cut(s)	209, 281, 312, 844
SspMI	CTAG	3 cut(s)	66, 159, 1378
StyD4I	CCNGG	2 cut(s)	754, 963
TaaI	ACNGT	6 cut(s)	78, 327, 858, 1063, 1304, 1349
TaqI	TCGA	4 cut(s)	294, 388, 736, 789
TasI	AATT	6 cut(s)	124, 276, 560, 771, 1017, 1167
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	3 cut(s)	162, 353, 932
Tru1I	TTAA	5 cut(s)	429, 590, 774, 867, 1170
Tru9I	TTAA	5 cut(s)	429, 590, 774, 867, 1170
TscAI	CASTG	5 cut(s)	427, 667, 942, 1057, 1197
TseI	GCWGC	4 cut(s)	27, 362, 542, 1068
TspDTI	ATGAA	1 cut(s)	1367
TspGWI	ACGGA	1 cut(s)	1227
TspRI	CASTG	5 cut(s)	427, 667, 942, 1057, 1197
XagI	CCTNNNNNAGG	1 cut(s)	926
XbaI	TCTAGA	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	735
XspI	CTAG	3 cut(s)	66, 159, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.