Rroxscaffold_6G00425770

Peptide chain release factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
46766966 .. 46771490
4525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425770.1

Sequence Viewer

Length: 1443 bp
ATGCGGTTCAGAGGCAGGGGGGACTTGGACCTCATTCACTTACTCGAAGCGAAAGCCACATCCATGGAGGTTCATCTAAAACCTCTATGCAGCTCAACAACTATCTTATCCCCCAAAGCTTCAAATACTAGACTACCACAGTTACCACGCAAGTCCACTTCCTCTTCTGCTTCTCGTATATCCTACAATTTACCCTTCTCCACTACGCTTTCCACACCTTCTAGATTCTCTCCATCTGTTTTATTTGCGACACCGGAGAGTCAAGTAAGCGCGGAAGTCAACACCAACGAAAGAGAATGGGCAATGCAAGATTTCTATACATTGAGGAGGGAGGTAGAAATTGCGGCAGGACGTGTTGAAGAGATAAGAGCTTCCGCTTGTCTGGAACAGTTGGAAAAAGAAGTTGCCGAGTTGGAATCCAAAGCAGCTGATAGCTCCTTTTGGGATGATCGAGCTAAGGCTCAAGAGAACCTTTTGGCCCTCACTGATGTCAAAGACAGAATAAAATCGCTTACTCACTTCAAAACACAGGTTGAAGATGCAGAAACAATAGTTAAGCTAACTGAAGAGATGGACTCCACAGATAATGCACTTCTTGAAGAGGCTGCCAGCATCATCAAGGAATTGAACAAGGGAATGGATCGGTTTGAGTTAACTCAACTTCTTTCAGGGCCTTATGACAAGGAAGGTGCTGTTATTTCTGTTACAGCCGGTGCTGGAGGCACTGACGCACAGGATTGGGCTGAAATGTTACTCAGGATGTATATGAGGTGGGGAGAAAAGCAGAGATACAAAACTCGAGTGGTTGAGAGATCCCCAGGAGAGGAAGCTGGAATTAAGTCGGCGACACTCGAAGTTGAAGGTCGTTATGCTTATGGTTATTTGTCTGGGGAGAAAGGCACACACCGCATTGTACGACAGTCTCCTTTTAATGCCAAAGGTCTTCGCCAGACAAGCTTCTCTGGTGTGGAAGTGATGCCTCTCCTACCTGAGGAATCACTGAAAGTTGAAATACCTGAAGAAGACCTGGAGATAACCACTTCAAGGGCAGGTGGGAAAGGAGGTCAGAATGTGAATAAAATTGAAAGTGCTGTCCGGATTACTCACATCCCCACTGGTGTTACTGTTCGCTGCACAGAAGAGAGATCCCAGCTTGCAAACAGAATAAAGGCTCTAAGCAGGTTGAAAGCGAAGCTGTTGGTGATAGCTGAGGAGCAACGAGCATCGGAAATTAAGCAAATACGAGGAGATGCAGTGAAGGCAGAGTGGGGGCAACAAATAAGGAACTATGTGTTCCATCCGTACAAACTCGTCAAGGATGTAAGGACAGGATATGAGACATCTGATATCACTTCTGTGATGGACGGTGATTTGGAGCCTTACATCAAAGCCTACCTCAAACATAAATACAGTATGAAAATAAGCGCATCAAGTAAAGCTTAG

Protein Analysis

480

Amino Acids

53.64

Weight (kDa)

6.47

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCRF PF03462 131 - 323 2.2e-51 PCRF domain
RF-1 PF00472 334 - 442 3e-36 RF-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1040
Acc36I ACCTGC 2 cut(s) 1040, 1170
AccII CGCG 1 cut(s) 272
AccIII TCCGGA 1 cut(s) 1095
AciI CCGC 5 cut(s) 4, 272, 344, 375, 907
AclWI GGATC 3 cut(s) 648, 807, 1140
AcuI CTGAAG 2 cut(s) 585, 1038
AfaI GTAC 2 cut(s) 915, 1304
AfiI CCNNNNNNNGG 3 cut(s) 823, 991, 1044
AflIII ACRYGT 1 cut(s) 352
AjiI CACGTC 1 cut(s) 353
AjnI CCWGG 2 cut(s) 817, 1026
AleI CACNNNNGTG 1 cut(s) 1355
Alw26I GTCTC 2 cut(s) 927, 1331
AlwI GGATC 3 cut(s) 648, 807, 1140
Ama87I CYCGRG 1 cut(s) 798
Aor13HI TCCGGA 1 cut(s) 1095
AoxI GGCC 2 cut(s) 477, 671
ApeKI GCWGC 4 cut(s) 90, 425, 605, 1131
AspLEI GCGC 2 cut(s) 272, 1427
AspS9I GGNCC 3 cut(s) 28, 478, 671
AsuHPI GGTGA 2 cut(s) 1213, 1379
AvaI CYCGRG 1 cut(s) 798
AvaII GGWCC 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 990
BbsI GAAGAC 2 cut(s) 935, 1029
BbvCI CCTCAGC 1 cut(s) 1209
BbvI GCAGC 4 cut(s) 102, 437, 592, 1118
BccI CCATC 4 cut(s) 241, 565, 1305, 1354
BciT130I CCWGG 2 cut(s) 819, 1028
BcoDI GTCTC 2 cut(s) 927, 1331
BfaI CTAG 2 cut(s) 129, 222
BfuAI ACCTGC 2 cut(s) 1040, 1170
BisI GCNGC 5 cut(s) 91, 345, 426, 606, 1132
BlsI GCNGC 5 cut(s) 92, 346, 427, 607, 1133
Bme1390I CCNGG 2 cut(s) 819, 1028
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 798
BmgBI CACGTC 1 cut(s) 353
BmgT120I GGNCC 3 cut(s) 28, 478, 671
BmiI GGNNCC 1 cut(s) 1377
BmrFI CCNGG 2 cut(s) 819, 1028
BmsI GCATC 6 cut(s) 529, 621, 966, 1232, 1240, 1436
BpiI GAAGAC 2 cut(s) 935, 1029
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 2 cut(s) 738, 1049
Bpu10I CCTNAGC 2 cut(s) 456, 1209
BpuEI CTTGAG 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 63, 817
BsaWI WCCGGW 2 cut(s) 253, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 1239, 1269
Bsc4I CCNNNNNNNGG 3 cut(s) 823, 991, 1044
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 1 cut(s) 1120
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 1095
BseBI CCWGG 2 cut(s) 819, 1028
BseDI CCNNGG 2 cut(s) 63, 817
BseGI GGATG 6 cut(s) 59, 451, 765, 1107, 1297, 1324
BseLI CCNNNNNNNGG 3 cut(s) 823, 991, 1044
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 3 cut(s) 769, 981, 1200
BseNI ACTGG 1 cut(s) 1120
BseRI GAGGAG 3 cut(s) 340, 1226, 1260
BseXI GCAGC 4 cut(s) 102, 437, 592, 1118
BseYI CCCAGC 1 cut(s) 1149
BsgI GTGCAG 1 cut(s) 1117
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 2 cut(s) 479, 673
BsiHKCI CYCGRG 1 cut(s) 798
BsiSI CCGG 3 cut(s) 254, 711, 1096
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 823, 991, 1044
BsmAI GTCTC 2 cut(s) 927, 1331
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 479, 673
BsoBI CYCGRG 1 cut(s) 798
Bsp13I TCCGGA 1 cut(s) 1095
Bsp143I GATC 4 cut(s) 448, 640, 812, 1145
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 5 cut(s) 4, 272, 344, 375, 907
BspANI GGCC 2 cut(s) 479, 673
BspCNI CTCAG 3 cut(s) 768, 982, 1201
BspEI TCCGGA 1 cut(s) 1095
BspFNI CGCG 1 cut(s) 272
BspLI GGNNCC 1 cut(s) 1377
BspMI ACCTGC 2 cut(s) 1040, 1170
BspPI GGATC 3 cut(s) 648, 807, 1140
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 1 cut(s) 1120
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 2 cut(s) 63, 817
BssMI GATC 4 cut(s) 448, 640, 812, 1145
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 819, 1028
Bst4CI ACNGT 6 cut(s) 141, 390, 921, 1126, 1367, 1412
Bst6I CTCTTC 5 cut(s) 169, 354, 561, 594, 1134
BstC8I GCNNGC 2 cut(s) 610, 1155
BstDEI CTNAG 6 cut(s) 456, 755, 990, 1175, 1209, 1440
BstDSI CCRYGG 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 989
BstF5I GGATG 6 cut(s) 59, 451, 765, 1107, 1297, 1324
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 2 cut(s) 272, 1427
BstKTI GATC 4 cut(s) 451, 643, 815, 1148
BstMAI GTCTC 2 cut(s) 927, 1331
BstMBI GATC 4 cut(s) 448, 640, 812, 1145
BstMWI GCNNNNNNNGC 3 cut(s) 906, 954, 1259
BstNI CCWGG 2 cut(s) 819, 1028
BstSCI CCNGG 2 cut(s) 817, 1026
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 102, 437, 592, 1118
BstV2I GAAGAC 2 cut(s) 935, 1029
BstX2I RGATCY 2 cut(s) 812, 1145
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 2 cut(s) 812, 1145
Bsu36I CCTNAGG 1 cut(s) 990
BsuRI GGCC 2 cut(s) 479, 673
BtgI CCRYGG 1 cut(s) 63
BtrI CACGTC 1 cut(s) 353
BtsCI GGATG 6 cut(s) 59, 451, 765, 1107, 1297, 1324
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 5 cut(s) 483, 723, 998, 1113, 1260
BveI ACCTGC 2 cut(s) 1040, 1170
Cac8I GCNNGC 2 cut(s) 610, 1155
CfoI GCGC 2 cut(s) 272, 1427
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 3 cut(s) 28, 478, 671
CseI GACGC 1 cut(s) 737
Csp6I GTAC 2 cut(s) 914, 1303
CviAII CATG 1 cut(s) 64
CviQI GTAC 2 cut(s) 914, 1303
DdeI CTNAG 6 cut(s) 456, 755, 990, 1175, 1209, 1440
DpnI GATC 4 cut(s) 450, 642, 814, 1147
DpnII GATC 4 cut(s) 448, 640, 812, 1145
Eam1104I CTCTTC 5 cut(s) 169, 354, 561, 594, 1134
EarI CTCTTC 5 cut(s) 169, 354, 561, 594, 1134
Eco130I CCWWGG 1 cut(s) 63
Eco32I GATATC 1 cut(s) 1348
Eco47I GGWCC 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 585, 1038
Eco81I CCTNAGG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 798
EcoNI CCTNNNNNAGG 1 cut(s) 989
EcoO109I RGGNCCY 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 817, 1026
EcoRV GATATC 1 cut(s) 1348
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 67
FalI AAGNNNNNCTT 3 cut(s) 456, 488, 1423
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 5 cut(s) 91, 345, 426, 606, 1132
FokI GGATG 6 cut(s) 46, 458, 772, 1094, 1284, 1331
Fsp4HI GCNGC 5 cut(s) 91, 345, 426, 606, 1132
FspBI CTAG 2 cut(s) 129, 222
GlaI GCGC 2 cut(s) 271, 1426
GluI GCNGC 5 cut(s) 91, 345, 426, 606, 1132
GsaI CCCAGC 1 cut(s) 1153
GsuI CTGGAG 2 cut(s) 738, 1049
HaeIII GGCC 2 cut(s) 479, 673
HapII CCGG 3 cut(s) 254, 711, 1096
HgaI GACGC 1 cut(s) 737
HhaI GCGC 2 cut(s) 272, 1427
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 2 cut(s) 270, 1425
HinP1I GCGC 2 cut(s) 270, 1425
HincII GTYRAC 2 cut(s) 280, 654
HindII GTYRAC 2 cut(s) 280, 654
HindIII AAGCTT 3 cut(s) 117, 955, 1437
HinfI GANTC 5 cut(s) 225, 259, 416, 575, 995
HpaI GTTAAC 1 cut(s) 654
HpaII CCGG 3 cut(s) 254, 711, 1096
HphI GGTGA 2 cut(s) 1213, 1379
Hpy166II GTNNAC 3 cut(s) 156, 280, 654
Hpy188I TCNGA 4 cut(s) 11, 1068, 1228, 1345
Hpy188III TCNNGA 6 cut(s) 222, 383, 464, 596, 757, 1096
Hpy8I GTNNAC 3 cut(s) 156, 280, 654
HpyAV CCTTC 5 cut(s) 205, 228, 680, 854, 1252
HpyCH4III ACNGT 6 cut(s) 141, 390, 921, 1126, 1367, 1412
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 7 cut(s) 90, 307, 542, 590, 1134, 1157, 1253
HpyF10VI GCNNNNNNNGC 3 cut(s) 906, 954, 1259
HpyF3I CTNAG 6 cut(s) 456, 755, 990, 1175, 1209, 1440
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 2 cut(s) 270, 1425
Kpn2I TCCGGA 1 cut(s) 1095
KspAI GTTAAC 1 cut(s) 654
Kzo9I GATC 4 cut(s) 448, 640, 812, 1145
LmnI GCTCC 3 cut(s) 440, 1213, 1375
Lsp1109I GCAGC 4 cut(s) 102, 437, 592, 1118
LweI GCATC 6 cut(s) 529, 621, 966, 1232, 1240, 1436
MaeI CTAG 2 cut(s) 129, 222
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 4 cut(s) 141, 703, 750, 1120
MalI GATC 4 cut(s) 450, 642, 814, 1147
MboI GATC 4 cut(s) 448, 640, 812, 1145
MboII GAAGA 9 cut(s) 156, 371, 548, 578, 611, 935, 1031, 1034, 1151
MflI RGATCY 2 cut(s) 812, 1145
MluCI AATT 6 cut(s) 187, 339, 623, 834, 1080, 1230
MlyI GAGTC 2 cut(s) 268, 569
MmeI TCCRAC 2 cut(s) 372, 393
MroI TCCGGA 1 cut(s) 1095
MseI TTAA 5 cut(s) 555, 653, 837, 930, 1233
MslI CAYNNNNRTG 2 cut(s) 62, 1355
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 3 cut(s) 254, 711, 1096
MspR9I CCNGG 2 cut(s) 819, 1028
MvaI CCWGG 2 cut(s) 819, 1028
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 906, 954, 1259
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 448, 640, 812, 1145
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 1377
NmeAIII GCCGAG 1 cut(s) 433
OliI CACNNNNGTG 1 cut(s) 1355
PaeR7I CTCGAG 1 cut(s) 798
PaqCI CACCTGC 1 cut(s) 1040
PfeI GAWTC 3 cut(s) 225, 416, 995
PkrI GCNGC 5 cut(s) 92, 346, 427, 607, 1133
PleI GAGTC 2 cut(s) 267, 569
PpsI GAGTC 2 cut(s) 267, 569
Psp6I CCWGG 2 cut(s) 817, 1026
PspFI CCCAGC 1 cut(s) 1149
PspGI CCWGG 2 cut(s) 817, 1026
PspN4I GGNNCC 1 cut(s) 1377
PspPI GGNCC 3 cut(s) 28, 478, 671
PspXI VCTCGAGB 1 cut(s) 798
PsuI RGATCY 2 cut(s) 812, 1145
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 915, 1304
RsaNI GTAC 2 cut(s) 914, 1303
RseI CAYNNNNRTG 2 cut(s) 62, 1355
SaqAI TTAA 5 cut(s) 555, 653, 837, 930, 1233
SatI GCNGC 5 cut(s) 91, 345, 426, 606, 1132
Sau3AI GATC 4 cut(s) 448, 640, 812, 1145
Sau96I GGNCC 3 cut(s) 28, 478, 671
SchI GAGTC 2 cut(s) 268, 569
ScrFI CCNGG 2 cut(s) 819, 1028
SfaNI GCATC 6 cut(s) 529, 621, 966, 1232, 1240, 1436
Sfr274I CTCGAG 1 cut(s) 798
SinI GGWCC 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 798
SmiMI CAYNNNNRTG 2 cut(s) 62, 1355
SmlI CTYRAG 2 cut(s) 462, 798
SmoI CTYRAG 2 cut(s) 462, 798
Sse9I AATT 6 cut(s) 187, 339, 623, 834, 1080, 1230
SsiI CCGC 5 cut(s) 4, 272, 344, 375, 907
SspMI CTAG 2 cut(s) 129, 222
StyD4I CCNGG 2 cut(s) 817, 1026
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 6 cut(s) 141, 390, 921, 1126, 1367, 1412
TaiI ACGT 1 cut(s) 355
TaqI TCGA 4 cut(s) 45, 451, 799, 852
TasI AATT 6 cut(s) 187, 339, 623, 834, 1080, 1230
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 3 cut(s) 225, 416, 995
Tru1I TTAA 5 cut(s) 555, 653, 837, 930, 1233
Tru9I TTAA 5 cut(s) 555, 653, 837, 930, 1233
TscAI CASTG 5 cut(s) 490, 730, 1005, 1120, 1260
TseI GCWGC 4 cut(s) 90, 425, 605, 1131
TspDTI ATGAA 2 cut(s) 62, 1430
TspGWI ACGGA 1 cut(s) 1290
TspRI CASTG 5 cut(s) 490, 730, 1005, 1120, 1260
VpaK11BI GGWCC 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 989
XbaI TCTAGA 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 798
XspI CTAG 2 cut(s) 129, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.