Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031754.1

Orthogroup ID

OG0005510

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1249

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031754.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

gattgggctgaaatgttactcaggatgtatatgaggtggggagaaaagcagagatacaaaactcgagtggttgagagatccccaggagaggaagctggaattaagtcggcgacactcgaagttgaaggtcgttatgcttatggttatttgtctggggagaaaggcacacaccgcattgtacgacagtctccttttaatgccaaaggtcttcgccagacaagcttctctggtgtggaagtgatgcctctcctacctgaggaatcactgaaagttgaaatacctgaagaagacctggagataaccacttcaagggcaggtgggaagggaggtcagaatgtgaataaaattgaaagtgctgtccggattactcacatccccactggtgttactgttcgctgcacagaagagagatcccagcttgcaaacagaataaaggctctaagcaggttgaaagcgaagctgttggtgatagctgaggagcaacgagcatcggagattaagcaaatacgaggagatgcagtgaaggcagagtgggggcaacaaataaggaactatgtgttccatccgtacaaactcgtcaaggatgtaaggacaggatatgagacatctgatatcacttctgtgatggacggtgatttggagccttacatcaaagcctacctcaaacataaatacagtatgaaaatcagtgcatcaagtaaagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006415 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

235

Amino Acids

26.61

Weight (kDa)

9.4

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36170 AT5G36170 AT5G36170 AT5G36170
fragaria_vesca	FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190
malus_domestica	MD04G1247400.v1.1 MD12G1263000.v1.1
prunus_persica	Prupe.6G363800_v2.0.a1 Prupe.6G363800_v2.0.a1
pyrus_communis	pycom04g21810
rosa_chinensis	RchiOBHm_Chr3g0447561
rosa_laevigata	RLG00000025989
rosa_multiflora	Rmu_co8330713.1_g000001 Rmu_co8444065.1_g000001 Rmu_sc0031754.1_g000001 Rmu_sc0037294.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425770
rosa_rugosa	Rorug02G0602900
rosa_samantha	Rh3AG003200 Rh3BG002700 Rh3CG003000 Rh3DG003000
rosa_wichuraiana	Rw3G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	2 cut(s)	305, 435
AccIII	TCCGGA	1 cut(s)	360
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	2 cut(s)	72, 405
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	180, 569
AfiI	CCNNNNNNNGG	3 cut(s)	88, 256, 309
AgsI	TTSAA	5 cut(s)	125, 275, 309, 350, 451
AjnI	CCWGG	2 cut(s)	82, 291
AleI	CACNNNNGTG	1 cut(s)	620
AluBI	AGCT	5 cut(s)	95, 222, 418, 460, 473
AluI	AGCT	5 cut(s)	95, 222, 418, 460, 473
Alw26I	GTCTC	2 cut(s)	192, 596
AlwI	GGATC	2 cut(s)	72, 405
Ama87I	CYCGRG	1 cut(s)	63
Aor13HI	TCCGGA	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	478, 644
AvaI	CYCGRG	1 cut(s)	63
AxyI	CCTNAGG	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	200, 294
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	570, 619
BciT130I	CCWGG	2 cut(s)	84, 293
BcoDI	GTCTC	2 cut(s)	192, 596
BfaI	CTAG	1 cut(s)	706
BfuAI	ACCTGC	2 cut(s)	305, 435
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	84, 293
BmeT110I	CYCGRG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	2 cut(s)	84, 293
BmsI	GCATC	4 cut(s)	231, 497, 505, 701
BpiI	GAAGAC	2 cut(s)	200, 294
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 256, 309
Bse1I	ACTGG	1 cut(s)	385
Bse21I	CCTNAGG	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	84, 293
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	4 cut(s)	30, 372, 562, 589
BseLI	CCNNNNNNNGG	3 cut(s)	88, 256, 309
BseMII	CTCAG	3 cut(s)	34, 246, 465
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	491, 525
BseXI	GCAGC	1 cut(s)	383
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	3 cut(s)	88, 256, 309
BsmAI	GTCTC	2 cut(s)	192, 596
BsoBI	CYCGRG	1 cut(s)	63
Bsp13I	TCCGGA	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	77, 410
BspACI	CCGC	1 cut(s)	172
BspCNI	CTCAG	3 cut(s)	33, 247, 466
BspEI	TCCGGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	642
BspMI	ACCTGC	2 cut(s)	305, 435
BspPI	GGATC	2 cut(s)	72, 405
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	77, 410
Bst2UI	CCWGG	2 cut(s)	84, 293
Bst4CI	ACNGT	4 cut(s)	186, 391, 632, 677
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	4 cut(s)	20, 255, 440, 474
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	4 cut(s)	30, 372, 562, 589
BstKTI	GATC	2 cut(s)	80, 413
BstMAI	GTCTC	2 cut(s)	192, 596
BstMBI	GATC	2 cut(s)	77, 410
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 219, 524
BstNI	CCWGG	2 cut(s)	84, 293
BstSCI	CCNGG	2 cut(s)	82, 291
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	2 cut(s)	200, 294
BstX2I	RGATCY	2 cut(s)	77, 410
BstYI	RGATCY	2 cut(s)	77, 410
Bsu36I	CCTNAGG	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	30, 372, 562, 589
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	4 cut(s)	263, 378, 525, 694
BveI	ACCTGC	2 cut(s)	305, 435
Cac8I	GCNNGC	1 cut(s)	420
Csp6I	GTAC	2 cut(s)	179, 568
CviQI	GTAC	2 cut(s)	179, 568
DdeI	CTNAG	4 cut(s)	20, 255, 440, 474
DpnI	GATC	2 cut(s)	79, 412
DpnII	GATC	2 cut(s)	77, 410
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	82, 291
EcoRV	GATATC	1 cut(s)	613
FaiI	YATR	8 cut(s)	30, 32, 135, 141, 555, 600, 669, 680
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	4 cut(s)	37, 359, 549, 596
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	706
GluI	GCNGC	1 cut(s)	397
GsaI	CCCAGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	314
HapII	CCGG	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	2 cut(s)	478, 644
Hpy188I	TCNGA	3 cut(s)	333, 493, 610
Hpy188III	TCNNGA	2 cut(s)	22, 361
HpyAV	CCTTC	3 cut(s)	119, 316, 517
HpyCH4III	ACNGT	4 cut(s)	186, 391, 632, 677
HpyCH4V	TGCA	4 cut(s)	399, 422, 518, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 219, 524
HpyF3I	CTNAG	4 cut(s)	20, 255, 440, 474
Kpn2I	TCCGGA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	77, 410
LmnI	GCTCC	2 cut(s)	478, 640
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	4 cut(s)	231, 497, 505, 701
MaeI	CTAG	1 cut(s)	706
MaeIII	GTNAC	2 cut(s)	15, 385
MalI	GATC	2 cut(s)	79, 412
MboI	GATC	2 cut(s)	77, 410
MboII	GAAGA	4 cut(s)	200, 296, 299, 416
MflI	RGATCY	2 cut(s)	77, 410
MluCI	AATT	2 cut(s)	99, 345
MnlI	CCTC	8 cut(s)	27, 82, 250, 255, 320, 469, 503, 671
MroI	TCCGGA	1 cut(s)	360
MseI	TTAA	3 cut(s)	102, 195, 498
MslI	CAYNNNNRTG	1 cut(s)	620
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	2 cut(s)	84, 293
MvaI	CCWGG	2 cut(s)	84, 293
MwoI	GCNNNNNNNGC	3 cut(s)	171, 219, 524
NdeII	GATC	2 cut(s)	77, 410
NlaIV	GGNNCC	1 cut(s)	642
OliI	CACNNNNGTG	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	82, 291
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	2 cut(s)	82, 291
PspN4I	GGNNCC	1 cut(s)	642
PspXI	VCTCGAGB	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	77, 410
RsaI	GTAC	2 cut(s)	180, 569
RsaNI	GTAC	2 cut(s)	179, 568
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	102, 195, 498
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	2 cut(s)	77, 410
ScrFI	CCNGG	2 cut(s)	84, 293
SfaNI	GCATC	4 cut(s)	231, 497, 505, 701
Sfr274I	CTCGAG	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	99, 345
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	706
StyD4I	CCNGG	2 cut(s)	82, 291
TaaI	ACNGT	4 cut(s)	186, 391, 632, 677
TaqI	TCGA	2 cut(s)	64, 117
TasI	AATT	2 cut(s)	99, 345
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	102, 195, 498
Tru9I	TTAA	3 cut(s)	102, 195, 498
TscAI	CASTG	4 cut(s)	270, 385, 525, 694
TseI	GCWGC	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	695
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	4 cut(s)	270, 385, 525, 694
XagI	CCTNNNNNAGG	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	63
XspI	CTAG	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.