AT5G38530

Pyridoxal-phosphate dependent enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016013
Physical Location & Seq
Forward (+)
15423980 .. 15426576
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38530.1

Sequence Viewer

Length: 1521 bp
ATGGCCTCTCAATTGCTTTTACCTCCAAACCAATTCACTAAATCAGTCTCACCTCAAGTTTTCATTACTGGTGATTGTCAAGGATTTAGTGACTTAACTCTGAAAAGAAAATCAAACCAAGCTACAAGAGTTTCAAATGGATCTAGCTTAAGAGTAAAAGCAGCTTTGAGATCTACTCACAACAAATCAGTGGTTGAGATTCCAAAACAATGGTATAATCTTGTTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCGAACCGATAAAACCCGAAGATTTGGCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCTACACAAGAGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTCCTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAAGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTTCCACAAGCTTATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGTCAATGGGGAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAGTATGGCAAGTAGCCAACTCTTACCATACAAAGCCATATCGCCGGTTAATGATGCAAACTTGGGGTGCAAAGGTTCATCCGTCGCCATCGGATCTCACTGAGGCGGGTAGAAGAATCCTCGAATCCGATCCATCAAGTCCGGGAAGTTTAGGCATTGCGATATCAGAAGCGGTTGAAGTTGCAGCGAGAAACGAGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAAACAATTATTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGACCTGATCATAGGGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATCCGGGAGAAACTCAAAGGCAAAATCAACCCTGTTATAAGAGCGGTTGAGCCATCTGCTTGTCCTTCCTTGACCAAAGGGGTTTATGCTTATGATTTTGGCGATACGGCTGGATTGACTCCTTTGATGAAGATGCATACTTTGGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTAAGGTACCATGGGATGGCACCATTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCAATTCCTCAAATTGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATCATACCCGCACCAGAACCGACCCACGCCATTGCTGCAACCATAAGAGAGGCTCTCCGATGTAAAGAGACGGGAGAAGCAAAAGTGATACTAATGGCGATGTGTGGACATGGCCATTTCGACCTTACTTCTTACGACAAGTATTTAAAAGGCGAGTTGGTGGATTTATCATTCAGCGAAGAGAAGATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00400 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map01100 map01110 map01130 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

506

Amino Acids

55.74

Weight (kDa)

6.79

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 130 - 468 2.3e-39 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38530
fragaria_vesca FvH4_6g45680
malus_domestica MD17G1071900.v1.1
prunus_persica Prupe.3G243000_v2.0.a1
pyrus_communis pycom17g07120
rosa_chinensis RchiOBHm_Chr2g0163831
rosa_laevigata RLG00000021419
rosa_multiflora Rmu_sc0005917.1_g000003
rosa_roxburghii Rroxscaffold_2G00086980
rosa_rugosa Rorug02G0504800
rosa_samantha Rh2AG572800 Rh2BG583500 Rh2CG554400 Rh2DG593100
rosa_wichuraiana Rw2G047360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
Acc65I GGTACC 1 cut(s) 1179
AccB1I GGYRCC 2 cut(s) 1179, 1192
AccB7I CCANNNNNTGG 1 cut(s) 1189
AccBSI CCGCTC 1 cut(s) 1034
AciI CCGC 5 cut(s) 509, 734, 800, 1034, 1305
AclI AACGTT 1 cut(s) 552
AclWI GGATC 6 cut(s) 148, 729, 752, 967, 1148, 1304
AcoI YGGCCR 1 cut(s) 1408
AcsI RAATTY 2 cut(s) 913, 964
AcyI GRCGYC 2 cut(s) 394, 543
AfaI GTAC 2 cut(s) 949, 1181
AfiI CCNNNNNNNGG 1 cut(s) 1189
AflII CTTAAG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 1207
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 8 cut(s) 135, 377, 440, 463, 806, 856, 902, 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 1257, 1289
AluBI AGCT 8 cut(s) 122, 147, 164, 335, 388, 433, 485, 521
AluI AGCT 8 cut(s) 122, 147, 164, 335, 388, 433, 485, 521
Alw26I GTCTC 3 cut(s) 52, 623, 1358
AlwI GGATC 6 cut(s) 148, 729, 752, 967, 1148, 1304
AoxI GGCC 2 cut(s) 3, 1408
ApeKI GCWGC 3 cut(s) 161, 812, 1331
ApoI RAATTY 2 cut(s) 913, 964
AsiGI ACCGGT 1 cut(s) 566
Asp700I GAANNNNTTC 1 cut(s) 897
Asp718I GGTACC 1 cut(s) 1179
AspA2I CCTAGG 1 cut(s) 841
AsuC2I CCSGG 2 cut(s) 771, 995
AsuHPI GGTGA 3 cut(s) 42, 83, 932
AsuII TTCGAA 1 cut(s) 273
AvrII CCTAGG 1 cut(s) 841
AxyI CCTNAGG 1 cut(s) 363
BaeI ACNNNNGTAYC 2 cut(s) 1475, 1508
BalI TGGCCA 1 cut(s) 1410
BanI GGYRCC 2 cut(s) 1179, 1192
BarI GAAGNNNNNNTAC 4 cut(s) 1284, 1316, 1467, 1499
BbvI GCAGC 3 cut(s) 173, 824, 1318
BccI CCATC 4 cut(s) 724, 769, 1051, 1183
BceAI ACGGC 1 cut(s) 1113
BciVI GTATCC 1 cut(s) 820
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 2 cut(s) 771, 995
BcoDI GTCTC 3 cut(s) 52, 623, 1358
BfaI CTAG 3 cut(s) 144, 606, 842
BfrI CTTAAG 1 cut(s) 148
BfuI GTATCC 1 cut(s) 820
BglII AGATCT 1 cut(s) 170
BisI GCNGC 3 cut(s) 162, 813, 1332
BlnI CCTAGG 1 cut(s) 841
BlsI GCNGC 3 cut(s) 163, 814, 1333
Bme1390I CCNGG 2 cut(s) 771, 995
BmiI GGNNCC 4 cut(s) 513, 1181, 1194, 1506
BmrFI CCNGG 2 cut(s) 771, 995
BmsI GCATC 3 cut(s) 268, 672, 1113
BplI GAGNNNNNCTC 4 cut(s) 160, 192, 1335, 1367
Bpu14I TTCGAA 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 771, 995
BsaHI GRCGYC 2 cut(s) 394, 543
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 4 cut(s) 841, 1183, 1264, 1500
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 1 cut(s) 1189
Bse118I RCCGGY 4 cut(s) 445, 566, 672, 1166
Bse1I ACTGG 2 cut(s) 73, 955
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 2 cut(s) 783, 1326
BseDI CCNNGG 4 cut(s) 841, 1183, 1264, 1500
BseGI GGATG 3 cut(s) 259, 706, 1194
BseLI CCNNNNNNNGG 1 cut(s) 1189
BseMI GCAATG 2 cut(s) 783, 1326
BseMII CTCAG 2 cut(s) 354, 720
BseNI ACTGG 2 cut(s) 73, 955
BseRI GAGGAG 2 cut(s) 237, 393
BseXI GCAGC 3 cut(s) 173, 824, 1318
BseYI CCCAGC 1 cut(s) 481
BshFI GGCC 2 cut(s) 5, 1410
BshNI GGYRCC 2 cut(s) 1179, 1192
BshTI ACCGGT 1 cut(s) 566
BsiSI CCGG 6 cut(s) 446, 567, 673, 770, 994, 1167
BslFI GGGAC 1 cut(s) 1149
BslI CCNNNNNNNGG 1 cut(s) 1189
BsmAI GTCTC 3 cut(s) 52, 623, 1358
BsmBI CGTCTC 1 cut(s) 1358
BsmFI GGGAC 1 cut(s) 1149
BsmI GAATGC 2 cut(s) 897, 899
BsnI GGCC 2 cut(s) 5, 1410
Bso31I GGTCTC 1 cut(s) 623
Bsp119I TTCGAA 1 cut(s) 273
Bsp19I CCATGG 1 cut(s) 1183
BspACI CCGC 5 cut(s) 509, 734, 800, 1034, 1305
BspANI GGCC 2 cut(s) 5, 1410
BspCNI CTCAG 2 cut(s) 355, 721
BspLI GGNNCC 4 cut(s) 513, 1181, 1194, 1506
BspPI GGATC 6 cut(s) 148, 729, 752, 967, 1148, 1304
BspT104I TTCGAA 1 cut(s) 273
BspT107I GGYRCC 2 cut(s) 1179, 1192
BspTI CTTAAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 623
BsrBI CCGCTC 1 cut(s) 1034
BsrDI GCAATG 2 cut(s) 783, 1326
BsrFI RCCGGY 4 cut(s) 445, 566, 672, 1166
BsrI ACTGG 2 cut(s) 73, 955
BssAI RCCGGY 4 cut(s) 445, 566, 672, 1166
BssECI CCNNGG 4 cut(s) 841, 1183, 1264, 1500
BssNI GRCGYC 2 cut(s) 394, 543
BssT1I CCWWGG 4 cut(s) 841, 1183, 1264, 1500
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 1470
BstACI GRCGYC 2 cut(s) 394, 543
BstAFI CTTAAG 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 363, 729
BstDSI CCRYGG 1 cut(s) 1183
BstF5I GGATG 3 cut(s) 259, 706, 1194
BstMAI GTCTC 3 cut(s) 52, 623, 1358
BstMWI GCNNNNNNNGC 1 cut(s) 1331
BstNSI RCATGY 1 cut(s) 1211
BstSCI CCNGG 2 cut(s) 769, 993
BstV1I GCAGC 3 cut(s) 173, 824, 1318
BstX2I RGATCY 3 cut(s) 140, 170, 721
BstXI CCANNNNNNTGG 2 cut(s) 210, 1169
BstYI RGATCY 3 cut(s) 140, 170, 721
Bsu36I CCTNAGG 1 cut(s) 363
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 2 cut(s) 5, 1410
BtgI CCRYGG 1 cut(s) 1183
BtgZI GCGATG 1 cut(s) 1409
BtsCI GGATG 3 cut(s) 259, 706, 1194
BtsIMutI CAGTG 2 cut(s) 195, 726
Cfr10I RCCGGY 4 cut(s) 445, 566, 672, 1166
CseI GACGC 2 cut(s) 383, 532
Csp6I GTAC 2 cut(s) 948, 1180
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 8 cut(s) 860, 1139, 1163, 1184, 1208, 1228, 1406, 1511
CviQI GTAC 2 cut(s) 948, 1180
DdeI CTNAG 2 cut(s) 363, 729
DraI TTTAAA 1 cut(s) 1443
EaeI YGGCCR 1 cut(s) 1408
Eam1104I CTCTTC 1 cut(s) 1470
EarI CTCTTC 1 cut(s) 1470
Eco130I CCWWGG 4 cut(s) 841, 1183, 1264, 1500
Eco31I GGTCTC 1 cut(s) 623
Eco32I GATATC 2 cut(s) 358, 792
Eco81I CCTNAGG 1 cut(s) 363
EcoRV GATATC 2 cut(s) 358, 792
EcoT14I CCWWGG 4 cut(s) 841, 1183, 1264, 1500
EcoT22I ATGCAT 2 cut(s) 899, 1128
ErhI CCWWGG 4 cut(s) 841, 1183, 1264, 1500
Esp3I CGTCTC 1 cut(s) 1358
FaeI CATG 8 cut(s) 863, 1142, 1166, 1187, 1211, 1231, 1409, 1514
FaqI GGGAC 1 cut(s) 1149
FatI CATG 8 cut(s) 859, 1138, 1162, 1183, 1207, 1227, 1405, 1510
FauI CCCGC 2 cut(s) 727, 1312
FbaI TGATCA 1 cut(s) 936
Fnu4HI GCNGC 3 cut(s) 162, 813, 1332
FokI GGATG 3 cut(s) 246, 693, 1201
Fsp4HI GCNGC 3 cut(s) 162, 813, 1332
FspBI CTAG 3 cut(s) 144, 606, 842
GluI GCNGC 3 cut(s) 162, 813, 1332
GsaI CCCAGC 1 cut(s) 485
HaeIII GGCC 2 cut(s) 5, 1410
HapII CCGG 6 cut(s) 446, 567, 673, 770, 994, 1167
HgaI GACGC 2 cut(s) 383, 532
Hin1I GRCGYC 2 cut(s) 394, 543
Hin1II CATG 8 cut(s) 863, 1142, 1166, 1187, 1211, 1231, 1409, 1514
HindIII AAGCTT 3 cut(s) 386, 431, 519
HinfI GANTC 6 cut(s) 199, 744, 752, 1108, 1224, 1490
HpaII CCGG 6 cut(s) 446, 567, 673, 770, 994, 1167
HphI GGTGA 3 cut(s) 42, 83, 932
Hpy166II GTNNAC 3 cut(s) 491, 948, 1403
Hpy188I TCNGA 6 cut(s) 102, 413, 721, 757, 796, 1355
Hpy188III TCNNGA 4 cut(s) 374, 547, 620, 1151
Hpy8I GTNNAC 3 cut(s) 491, 948, 1403
Hpy99I CGWCG 1 cut(s) 715
HpyAV CCTTC 4 cut(s) 464, 533, 1065, 1286
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 8 cut(s) 259, 685, 698, 812, 897, 1126, 1283, 1334
HpyF10VI GCNNNNNNNGC 1 cut(s) 1331
HpyF3I CTNAG 2 cut(s) 363, 729
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 2 cut(s) 394, 543
Hsp92II CATG 8 cut(s) 863, 1142, 1166, 1187, 1211, 1231, 1409, 1514
KpnI GGTACC 1 cut(s) 1183
Ksp22I TGATCA 1 cut(s) 936
Lsp1109I GCAGC 3 cut(s) 173, 824, 1318
LweI GCATC 3 cut(s) 268, 672, 1113
MaeI CTAG 3 cut(s) 144, 606, 842
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 3 cut(s) 89, 556, 867
MbiI CCGCTC 1 cut(s) 1034
MboII GAAGA 7 cut(s) 302, 428, 753, 902, 1132, 1487, 1492
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 3 cut(s) 140, 170, 721
MlsI TGGCCA 1 cut(s) 1410
MluCI AATT 8 cut(s) 11, 32, 879, 913, 964, 1236, 1242, 1251
MluNI TGGCCA 1 cut(s) 1410
MlyI GAGTC 2 cut(s) 1102, 1499
MmeI TCCRAC 1 cut(s) 422
Mox20I TGGCCA 1 cut(s) 1410
Mph1103I ATGCAT 2 cut(s) 899, 1128
MroXI GAANNNNTTC 1 cut(s) 897
MscI TGGCCA 1 cut(s) 1410
MseI TTAA 7 cut(s) 95, 149, 324, 677, 1175, 1442, 1519
MslI CAYNNNNRTG 2 cut(s) 1167, 1212
Msp20I TGGCCA 1 cut(s) 1410
MspA1I CMGCKG 2 cut(s) 485, 509
MspCI CTTAAG 1 cut(s) 148
MspI CCGG 6 cut(s) 446, 567, 673, 770, 994, 1167
MspR9I CCNGG 2 cut(s) 771, 995
MunI CAATTG 1 cut(s) 11
Mva1269I GAATGC 2 cut(s) 897, 899
MwoI GCNNNNNNNGC 1 cut(s) 1331
NciI CCSGG 2 cut(s) 771, 995
NcoI CCATGG 1 cut(s) 1183
NlaIII CATG 8 cut(s) 863, 1142, 1166, 1187, 1211, 1231, 1409, 1514
NlaIV GGNNCC 4 cut(s) 513, 1181, 1194, 1506
NmuCI GTSAC 2 cut(s) 89, 556
NsiI ATGCAT 2 cut(s) 899, 1128
NspI RCATGY 1 cut(s) 1211
NspV TTCGAA 1 cut(s) 273
PciI ACATGT 1 cut(s) 1207
PctI GAATGC 2 cut(s) 897, 899
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 4 cut(s) 199, 744, 752, 1224
PflMI CCANNNNNTGG 1 cut(s) 1189
PfoI TCCNGGA 2 cut(s) 769, 993
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 3 cut(s) 163, 814, 1333
PleI GAGTC 2 cut(s) 1102, 1498
PpsI GAGTC 2 cut(s) 1102, 1498
PscI ACATGT 1 cut(s) 1207
PsiI TTATAA 1 cut(s) 1028
Psp1406I AACGTT 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 481
PspN4I GGNNCC 4 cut(s) 513, 1181, 1194, 1506
PsuI RGATCY 3 cut(s) 140, 170, 721
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 2 cut(s) 949, 1181
RsaNI GTAC 2 cut(s) 948, 1180
RseI CAYNNNNRTG 2 cut(s) 1167, 1212
SaqAI TTAA 7 cut(s) 95, 149, 324, 677, 1175, 1442, 1519
SatI GCNGC 3 cut(s) 162, 813, 1332
SchI GAGTC 2 cut(s) 1102, 1499
ScrFI CCNGG 2 cut(s) 771, 995
SfaNI GCATC 3 cut(s) 268, 672, 1113
SfuI TTCGAA 1 cut(s) 273
SmiMI CAYNNNNRTG 2 cut(s) 1167, 1212
SmlI CTYRAG 2 cut(s) 54, 148
SmoI CTYRAG 2 cut(s) 54, 148
Sse9I AATT 8 cut(s) 11, 32, 879, 913, 964, 1236, 1242, 1251
SsiI CCGC 5 cut(s) 509, 734, 800, 1034, 1305
SspMI CTAG 3 cut(s) 144, 606, 842
StyD4I CCNGG 2 cut(s) 769, 993
StyI CCWWGG 4 cut(s) 841, 1183, 1264, 1500
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 1 cut(s) 555
TaqI TCGA 4 cut(s) 273, 621, 750, 1416
TasI AATT 8 cut(s) 11, 32, 879, 913, 964, 1236, 1242, 1251
TatI WGTACW 1 cut(s) 947
TfiI GAWTC 4 cut(s) 199, 744, 752, 1224
Tru1I TTAA 7 cut(s) 95, 149, 324, 677, 1175, 1442, 1519
Tru9I TTAA 7 cut(s) 95, 149, 324, 677, 1175, 1442, 1519
TscAI CASTG 2 cut(s) 195, 733
TseFI GTSAC 2 cut(s) 89, 556
TseI GCWGC 3 cut(s) 161, 812, 1331
Tsp45I GTSAC 2 cut(s) 89, 556
TspDTI ATGAA 7 cut(s) 52, 483, 695, 1133, 1135, 1216, 1230
TspGWI ACGGA 2 cut(s) 575, 699
TspRI CASTG 2 cut(s) 195, 733
Van91I CCANNNNNTGG 1 cut(s) 1189
Vha464I CTTAAG 1 cut(s) 148
XapI RAATTY 2 cut(s) 913, 964
XceI RCATGY 1 cut(s) 1211
XcmI CCANNNNNNNNNTGG 1 cut(s) 881
XmaJI CCTAGG 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 897
XspI CTAG 3 cut(s) 144, 606, 842
Zsp2I ATGCAT 2 cut(s) 899, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.