Prupe.3G243000_v2.0.a1

tryptophan synthase beta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016013
Physical Location & Seq
Reverse (-)
23590476 .. 23593443
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G243000.1

Sequence Viewer

Length: 1509 bp
ATGGCCACCCACAGCCTTTTCTCTGCAAATTCACTTCACAGTAAACCTTCATCAGGCACGCACATCAAAGTTGAGGAGAAATGGCTTGGATTTACTGCACTTGATAGAAAGCCAACGCATCTGAAACTTTCAAATGGATGTAGAGCAAGAGCAGCTCTCAATGCTGATCCAAGATCAATTGAAATCCCTCGTCAATGGTACAACCTGATTGCAGATCTTCCTGTAAAACCTCCTCCTCCATTGCATCCCAAGACCTTTGAACCGGTAAAACCCAAGGATTTGTCTCCTCTCTTTCCTGATGAGTTGATTAAGCAGGAGGCAAGCAACGAAAGATTCATAGATATTCCAGATGAAGTTCGTGATGTATACAGGCTTTGGCGCCCGTCCCCTCTCATTAGGGCCAAGAGGTTGGAGAAGCTTCTTGACACGCCTGCAAGAATTTACTACAAATATGAAGGTGTCAGCCCTGCTGGATCACACAAGCCGAACACTGCAGTTCCACAAGTGTGGTATAATGCACAGCAAGGCATCAAGAAGGTTGTGACAGAAACAGGAGCTGGTCAATGGGGAAGTGCATTGGCTTTTGCATGCAGCTTATTTGGTCTTGAGTGTGAGGTGTGGCAAGTGCGAGCTTCTTATGATCAAAAACCATATCGCAGATTGATGATGCAAACTTGGGGTGCAAAGGTACACCCATCTCCATCTAACTTAACCGAAGCAGGTAGAAAAATCCTACAAATGGATCCATCCAGCCCAGGAAGTTTAGGGATAGCTATATCTGAAGCCGTTGAGATTGCAGCCATGAATGCTGATACTAAATACTGTCTCGGAAGTGTTCTCAATCATGTTTTGCATCACCAGACAGTAATAGGTGAGGAGTGCCTAAAACAAATGGAGGCGATAGGTGAAACCCCAGACTTTATCATAGGATGTACCGGCGGAGGATCCAATTTTGCAGGGCTAAGTTTCCCATTCATCAGGGAGAAGCTGAAAGGGAAAATGAATCCTGTAATAAGAGCAGTTGAACCTGCAGCATGCCCTTCACTAACTAAAGGGGTATACACATATGATTATGGTGATACAGCAGGGATGACCCCACTAATGAAGATGCATACACTCGGGCACGACTTCATCCCTGACCCAATTCATGCTGGAGGATTGCGCTACCATGGGATGGCACCATTGATTTCACATGTGTACGAACTGGGTTACATGGAAGCAATTGCAATTCCCCAGATTGAGTGCTTTGAAGGTGCTATACAATTTGCTAGATCAGAAGGATTGATACCAGCGCCGGAGCCTACTCATGCCATAGCTGCTACCATTAGGGAAGCTCTGAATTGTAGAGAGACTGGAGAAGCCAAAGTCATTCTCACAGCAATGTGTGGACATGGCCATTTTGATTTGCCAGCTTATGATAACTATCTGCAAGGAAAGCTGGTTGACTTGTCATTTGAGGAGGAGAAGATACAAGCATCATTGGCCAGAGTTCCCAAAGTAGGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00400 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map01100 map01110 map01130 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

503

Amino Acids

55.28

Weight (kDa)

7.01

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38530
fragaria_vesca FvH4_6g45680
malus_domestica MD17G1071900.v1.1
prunus_persica Prupe.3G243000_v2.0.a1
pyrus_communis pycom17g07120
rosa_chinensis RchiOBHm_Chr2g0163831
rosa_laevigata RLG00000021419
rosa_multiflora Rmu_sc0005917.1_g000003
rosa_roxburghii Rroxscaffold_2G00086980
rosa_rugosa Rorug02G0504800
rosa_samantha Rh2AG572800 Rh2BG583500 Rh2CG554400 Rh2DG593100
rosa_wichuraiana Rw2G047360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 710, 1036
AccB1I GGYRCC 2 cut(s) 378, 1177
AccB7I CCANNNNNTGG 1 cut(s) 1174
AccI GTMKAC 2 cut(s) 366, 1059
AciI CCGC 1 cut(s) 939
AclWI GGATC 6 cut(s) 161, 481, 737, 750, 939, 952
AcoI YGGCCR 3 cut(s) 3, 1393, 1482
AcsI RAATTY 2 cut(s) 28, 438
AcuI CTGAAG 1 cut(s) 801
AcyI GRCGYC 1 cut(s) 379
AfaI GTAC 4 cut(s) 200, 690, 934, 1199
AfiI CCNNNNNNNGG 5 cut(s) 53, 739, 1174, 1499, 1500
AflIII ACRYGT 1 cut(s) 1192
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 5 cut(s) 132, 182, 260, 1025, 1250
AjnI CCWGG 1 cut(s) 754
AleI CACNNNNGTG 1 cut(s) 505
Alw26I GTCTC 3 cut(s) 288, 830, 1343
AlwI GGATC 6 cut(s) 161, 481, 737, 750, 939, 952
AlwNI CAGNNNCTG 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 1118
AoxI GGCC 4 cut(s) 3, 399, 1393, 1482
ApeKI GCWGC 5 cut(s) 152, 591, 797, 1031, 1316
ApoI RAATTY 2 cut(s) 28, 438
ArsI GACNNNNNNTTYG 2 cut(s) 1436, 1468
AsiGI ACCGGT 1 cut(s) 262
AspLEI GCGC 3 cut(s) 381, 1164, 1294
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 4 cut(s) 848, 884, 917, 1088
AvaI CYCGRG 1 cut(s) 1118
BaeGI GKGCMC 1 cut(s) 1125
BalI TGGCCA 3 cut(s) 5, 1395, 1484
BamHI GGATCC 2 cut(s) 742, 944
BanI GGYRCC 2 cut(s) 378, 1177
BarI GAAGNNNNNNTAC 4 cut(s) 1242, 1269, 1274, 1301
BbvI GCAGC 5 cut(s) 164, 603, 809, 1043, 1303
BccI CCATC 4 cut(s) 703, 709, 754, 1168
BceAI ACGGC 1 cut(s) 770
BciT130I CCWGG 1 cut(s) 756
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 3 cut(s) 288, 830, 1343
BfaI CTAG 1 cut(s) 1269
BfmI CTRYAG 2 cut(s) 492, 1029
BfoI RGCGCY 2 cut(s) 382, 1295
BfuAI ACCTGC 2 cut(s) 710, 1036
BglII AGATCT 1 cut(s) 214
BisI GCNGC 5 cut(s) 153, 592, 798, 1032, 1317
BlsI GCNGC 5 cut(s) 154, 593, 799, 1033, 1318
Bme1390I CCNGG 1 cut(s) 756
BmeT110I CYCGRG 1 cut(s) 1118
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 5 cut(s) 380, 744, 946, 1179, 1299
BmrFI CCNGG 1 cut(s) 756
BmrI ACTGGG 1 cut(s) 1214
BmsI GCATC 7 cut(s) 127, 253, 537, 657, 862, 1098, 1484
BmuI ACTGGG 1 cut(s) 1214
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 2 cut(s) 1173, 1374
BpuEI CTTGAG 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 1422
BsaHI GRCGYC 1 cut(s) 379
BsaJI CCNNGG 3 cut(s) 273, 754, 1168
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 739, 1174, 1499, 1500
Bse118I RCCGGY 2 cut(s) 262, 935
Bse1I ACTGG 2 cut(s) 1209, 1357
Bse3DI GCAATG 2 cut(s) 239, 1386
Bse8I GATNNNNATC 1 cut(s) 1422
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 3 cut(s) 273, 754, 1168
BseGI GGATG 7 cut(s) 143, 244, 746, 935, 1095, 1131, 1179
BseJI GATNNNNATC 1 cut(s) 1422
BseLI CCNNNNNNNGG 5 cut(s) 53, 739, 1174, 1499, 1500
BseMI GCAATG 2 cut(s) 239, 1386
BseNI ACTGG 2 cut(s) 1209, 1357
BseRI GAGGAG 7 cut(s) 89, 222, 225, 276, 890, 1472, 1475
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 5 cut(s) 164, 603, 809, 1043, 1303
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 4 cut(s) 5, 401, 1395, 1484
BshNI GGYRCC 2 cut(s) 378, 1177
BshTI ACCGGT 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 1118
BsiSI CCGG 3 cut(s) 263, 936, 1295
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 5 cut(s) 53, 739, 1174, 1499, 1500
BsmAI GTCTC 3 cut(s) 288, 830, 1343
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 4 cut(s) 5, 401, 1395, 1484
BsoBI CYCGRG 1 cut(s) 1118
Bsp1286I GDGCHC 1 cut(s) 1125
Bsp143I GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 1 cut(s) 939
BspANI GGCC 4 cut(s) 5, 401, 1395, 1484
BspLI GGNNCC 5 cut(s) 380, 744, 946, 1179, 1299
BspMAI CTGCAG 2 cut(s) 496, 1033
BspMI ACCTGC 2 cut(s) 710, 1036
BspPI GGATC 6 cut(s) 161, 481, 737, 750, 939, 952
BspT107I GGYRCC 2 cut(s) 378, 1177
BsrDI GCAATG 2 cut(s) 239, 1386
BsrFI RCCGGY 2 cut(s) 262, 935
BsrI ACTGG 2 cut(s) 1209, 1357
BssAI RCCGGY 2 cut(s) 262, 935
BssECI CCNNGG 3 cut(s) 273, 754, 1168
BssMI GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
BssNAI GTATAC 2 cut(s) 367, 1060
BssNI GRCGYC 1 cut(s) 379
BssT1I CCWWGG 2 cut(s) 273, 1168
Bst1107I GTATAC 2 cut(s) 367, 1060
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 3 cut(s) 41, 824, 865
BstACI GRCGYC 1 cut(s) 379
BstC8I GCNNGC 7 cut(s) 59, 322, 432, 589, 630, 1036, 1410
BstDEI CTNAG 1 cut(s) 962
BstDSI CCRYGG 1 cut(s) 1168
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 7 cut(s) 143, 244, 746, 935, 1095, 1131, 1179
BstH2I RGCGCY 2 cut(s) 382, 1295
BstHHI GCGC 3 cut(s) 381, 1164, 1294
BstKTI GATC 8 cut(s) 169, 176, 217, 476, 643, 745, 947, 1274
BstMAI GTCTC 3 cut(s) 288, 830, 1343
BstMBI GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
BstMWI GCNNNNNNNGC 6 cut(s) 152, 161, 806, 1316, 1435, 1481
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 3 cut(s) 591, 1038, 1196
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 2 cut(s) 492, 1029
BstSLI GKGCMC 1 cut(s) 1125
BstV1I GCAGC 5 cut(s) 164, 603, 809, 1043, 1303
BstX2I RGATCY 3 cut(s) 214, 742, 944
BstXI CCANNNNNNTGG 2 cut(s) 409, 507
BstYI RGATCY 3 cut(s) 214, 742, 944
BstZ17I GTATAC 2 cut(s) 367, 1060
BsuRI GGCC 4 cut(s) 5, 401, 1395, 1484
BtgI CCRYGG 1 cut(s) 1168
BtsCI GGATG 7 cut(s) 143, 244, 746, 935, 1095, 1131, 1179
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
BveI ACCTGC 2 cut(s) 710, 1036
Cac8I GCNNGC 7 cut(s) 59, 322, 432, 589, 630, 1036, 1410
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 3 cut(s) 381, 1164, 1294
Cfr10I RCCGGY 2 cut(s) 262, 935
Cfr13I GGNCC 1 cut(s) 399
Csp6I GTAC 4 cut(s) 199, 689, 933, 1198
CspAI ACCGGT 1 cut(s) 262
CviQI GTAC 4 cut(s) 199, 689, 933, 1198
DdeI CTNAG 1 cut(s) 962
DinI GGCGCC 1 cut(s) 380
DpnI GATC 8 cut(s) 168, 175, 216, 475, 642, 744, 946, 1273
DpnII GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
EaeI YGGCCR 3 cut(s) 3, 1393, 1482
EciI GGCGGA 1 cut(s) 954
Eco130I CCWWGG 2 cut(s) 273, 1168
Eco57I CTGAAG 1 cut(s) 801
Eco88I CYCGRG 1 cut(s) 1118
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 2 cut(s) 273, 1168
EcoT22I ATGCAT 1 cut(s) 1113
EgeI GGCGCC 1 cut(s) 380
EheI GGCGCC 1 cut(s) 380
ErhI CCWWGG 2 cut(s) 273, 1168
FaqI GGGAC 1 cut(s) 370
FauNDI CATATG 1 cut(s) 1066
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 2 cut(s) 366, 1059
Fnu4HI GCNGC 5 cut(s) 153, 592, 798, 1032, 1317
FokI GGATG 7 cut(s) 150, 231, 733, 942, 1102, 1118, 1186
Fsp4HI GCNGC 5 cut(s) 153, 592, 798, 1032, 1317
FspBI CTAG 1 cut(s) 1269
GlaI GCGC 3 cut(s) 380, 1163, 1293
GluI GCNGC 5 cut(s) 153, 592, 798, 1032, 1317
GsuI CTGGAG 2 cut(s) 1173, 1374
HaeII RGCGCY 2 cut(s) 382, 1295
HaeIII GGCC 4 cut(s) 5, 401, 1395, 1484
HapII CCGG 3 cut(s) 263, 936, 1295
HhaI GCGC 3 cut(s) 381, 1164, 1294
Hin1I GRCGYC 1 cut(s) 379
Hin6I GCGC 3 cut(s) 379, 1162, 1292
HinP1I GCGC 3 cut(s) 379, 1162, 1292
HincII GTYRAC 1 cut(s) 1444
HindII GTYRAC 1 cut(s) 1444
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 2 cut(s) 333, 1003
HpaII CCGG 3 cut(s) 263, 936, 1295
HphI GGTGA 4 cut(s) 848, 884, 917, 1088
Hpy166II GTNNAC 7 cut(s) 44, 367, 691, 1060, 1198, 1388, 1444
Hpy188I TCNGA 5 cut(s) 123, 781, 830, 1276, 1338
Hpy188III TCNNGA 6 cut(s) 296, 347, 359, 422, 532, 605
Hpy8I GTNNAC 7 cut(s) 44, 367, 691, 1060, 1198, 1388, 1444
HpyAV CCTTC 6 cut(s) 57, 449, 529, 1050, 1244, 1271
HpyCH4III ACNGT 3 cut(s) 41, 824, 865
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 161, 806, 1316, 1435, 1481
HpyF3I CTNAG 1 cut(s) 962
Hsp92I GRCGYC 1 cut(s) 379
HspAI GCGC 3 cut(s) 379, 1162, 1292
KasI GGCGCC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
LmnI GCTCC 2 cut(s) 554, 1297
Lsp1109I GCAGC 5 cut(s) 164, 603, 809, 1043, 1303
LweI GCATC 7 cut(s) 127, 253, 537, 657, 862, 1098, 1484
MaeI CTAG 1 cut(s) 1269
MaeIII GTNAC 2 cut(s) 541, 1208
MalI GATC 8 cut(s) 168, 175, 216, 475, 642, 744, 946, 1273
MboI GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
MboII GAAGA 3 cut(s) 209, 1117, 1477
MfeI CAATTG 2 cut(s) 177, 1221
MflI RGATCY 3 cut(s) 214, 742, 944
MhlI GDGCHC 1 cut(s) 1125
MlsI TGGCCA 3 cut(s) 5, 1395, 1484
MluCI AATT 9 cut(s) 28, 177, 438, 949, 1143, 1221, 1227, 1262, 1339
MluNI TGGCCA 3 cut(s) 5, 1395, 1484
Mly113I GGCGCC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 390
Mox20I TGGCCA 3 cut(s) 5, 1395, 1484
Mph1103I ATGCAT 1 cut(s) 1113
MscI TGGCCA 3 cut(s) 5, 1395, 1484
MseI TTAA 2 cut(s) 309, 710
MslI CAYNNNNRTG 2 cut(s) 505, 1379
Msp20I TGGCCA 3 cut(s) 5, 1395, 1484
MspI CCGG 3 cut(s) 263, 936, 1295
MspR9I CCNGG 1 cut(s) 756
MunI CAATTG 2 cut(s) 177, 1221
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 6 cut(s) 152, 161, 806, 1316, 1435, 1481
NarI GGCGCC 1 cut(s) 379
NcoI CCATGG 1 cut(s) 1168
NdeI CATATG 1 cut(s) 1066
NdeII GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
NlaIV GGNNCC 5 cut(s) 380, 744, 946, 1179, 1299
NmuCI GTSAC 1 cut(s) 541
NsiI ATGCAT 1 cut(s) 1113
NspI RCATGY 3 cut(s) 591, 1038, 1196
OliI CACNNNNGTG 1 cut(s) 505
PaeI GCATGC 2 cut(s) 591, 1038
PciI ACATGT 1 cut(s) 1192
PctI GAATGC 1 cut(s) 811
PfeI GAWTC 2 cut(s) 333, 1003
PflMI CCANNNNNTGG 1 cut(s) 1174
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 5 cut(s) 154, 593, 799, 1033, 1318
PluTI GGCGCC 1 cut(s) 382
PscI ACATGT 1 cut(s) 1192
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 5 cut(s) 380, 744, 946, 1179, 1299
PspPI GGNCC 1 cut(s) 399
PstI CTGCAG 2 cut(s) 496, 1033
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 3 cut(s) 214, 742, 944
RsaI GTAC 4 cut(s) 200, 690, 934, 1199
RsaNI GTAC 4 cut(s) 199, 689, 933, 1198
RseI CAYNNNNRTG 2 cut(s) 505, 1379
SaqAI TTAA 2 cut(s) 309, 710
SatI GCNGC 5 cut(s) 153, 592, 798, 1032, 1317
Sau3AI GATC 8 cut(s) 166, 173, 214, 473, 640, 742, 944, 1271
Sau96I GGNCC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 1 cut(s) 1125
SfaNI GCATC 7 cut(s) 127, 253, 537, 657, 862, 1098, 1484
SfcI CTRYAG 2 cut(s) 492, 1029
SfoI GGCGCC 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 505, 1379
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SphI GCATGC 2 cut(s) 591, 1038
Sse9I AATT 9 cut(s) 28, 177, 438, 949, 1143, 1221, 1227, 1262, 1339
SsiI CCGC 1 cut(s) 939
SspDI GGCGCC 1 cut(s) 378
SspMI CTAG 1 cut(s) 1269
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 2 cut(s) 273, 1168
TaaI ACNGT 3 cut(s) 41, 824, 865
TasI AATT 9 cut(s) 28, 177, 438, 949, 1143, 1221, 1227, 1262, 1339
TfiI GAWTC 2 cut(s) 333, 1003
Tru1I TTAA 2 cut(s) 309, 710
Tru9I TTAA 2 cut(s) 309, 710
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 5 cut(s) 152, 591, 797, 1031, 1316
Tsp45I GTSAC 1 cut(s) 541
TspRI CASTG 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 1174
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 2 cut(s) 28, 438
XceI RCATGY 3 cut(s) 591, 1038, 1196
XmiI GTMKAC 2 cut(s) 366, 1059
XspI CTAG 1 cut(s) 1269
Zsp2I ATGCAT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.