AT5G39800

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006293
Physical Location & Seq
Forward (+)
15935453 .. 15937201
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39800.1

Sequence Viewer

Length: 285 bp
ATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGAAGAAAGAGATCTTCTTCTCTTGACATTCTCTCTCCCAAAAGAGCTCCAAGAGACTTTTACAAGGGCAAAAACTGCAAACCTACTGGTTTCCACACGAGAAAAGGAGGATATGTTGTGCAGCCAGATAAGTTGCCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAACCATATGTATCTCAATGCCCGATACAAGTCAACACAAACGAGTCAACTGAAGCTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-L27

Protein Analysis

94

Amino Acids

10.48

Weight (kDa)

10.13

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L27 PF09809 26 - 80 1.3e-17 Mitochondrial ribosomal protein L27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 3 cut(s) 92, 217, 275
AluI AGCT 3 cut(s) 92, 217, 275
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 196
BanII GRGCYC 1 cut(s) 94
BauI CACGAG 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 93
BglII AGATCT 1 cut(s) 56
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 38, 56, 199
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 3 cut(s) 38, 56, 199
BssSI CACGAG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 190
BstKTI GATC 3 cut(s) 41, 59, 202
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 38, 56, 199
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 206
CviJI RGCY 5 cut(s) 92, 169, 210, 217, 275
CviKI_1 RGCY 5 cut(s) 92, 169, 210, 217, 275
DpnI GATC 3 cut(s) 40, 58, 201
DpnII GATC 3 cut(s) 38, 56, 199
Ecl136II GAGCTC 1 cut(s) 92
Eco105I TACGTA 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 94
FaiI YATR 3 cut(s) 159, 226, 228
FaqI GGGAC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 167
HapII CCGG 1 cut(s) 207
HincII GTYRAC 2 cut(s) 253, 267
HindII GTYRAC 2 cut(s) 253, 267
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 253, 267
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 253, 267
Hpy99I CGWCG 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 123, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 189
Kzo9I GATC 3 cut(s) 38, 56, 199
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 117, 183, 210, 220
Lsp1109I GCAGC 1 cut(s) 178
MaeII ACGT 1 cut(s) 189
MalI GATC 3 cut(s) 40, 58, 201
MboI GATC 3 cut(s) 38, 56, 199
MboII GAAGA 4 cut(s) 48, 51, 54, 60
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 2 cut(s) 8, 146
MseI TTAA 2 cut(s) 23, 213
MspI CCGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 226
NdeII GATC 3 cut(s) 38, 56, 199
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 56
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 23, 213
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 3 cut(s) 38, 56, 199
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 1 cut(s) 94
SetI ASST 5 cut(s) 94, 130, 192, 219, 277
SnaBI TACGTA 1 cut(s) 190
Sse9I AATT 1 cut(s) 184
SstI GAGCTC 1 cut(s) 94
TaiI ACGT 1 cut(s) 192
TasI AATT 1 cut(s) 184
Tru1I TTAA 2 cut(s) 23, 213
Tru9I TTAA 2 cut(s) 23, 213
TseI GCWGC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.