Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006293

Physical Location & Seq

Genomic Coordinates Forward (+)

23791316 .. 23794686

Gene Structure 3371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0251800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTTCCTGAGGCCTCCAACAGCATCCTCTACTTTGTGGGAACCGTCTCCGAAAGGTGCTTGCCTCAGTACCATAGATTTCAAGCCGCCTCAATTATCAACTGCGAGTTCATATAATCTTGGCTTGAAGTTTGAGCATGGAAAGCTTCGTAAAGGGGGAAGTACATGCAGAACCATCTACTCTGTCAGTAGGAAGCCCAGTGTAGAACCAACTTTCAGGAAGCGAGATGCATCTCCCCAAAATGAGGATCTTCCAGCTGTACTACCTAAGCAAAAGAAAAAACCATATCCCATTCCCTTAAAGAAGATTAAGCAGGCTGCAAAGGTGAACAAAAAACTTGCAGAAAAGGGTATAGAAAAGCCGCTCGACCCTCCAAAAAATGGATTACTTGACCCTGATCTAATTCCTGTTGCTCATCAAGTACTGCATGCCTGGAAAGCTTTGATTAAAGGCCTTGCACAGCTGTTGCATGTTATTCCAGTATATGGTTGCCTTGAATGCTCTGAGGTCCATGTAGCCCATTCTGGCCATCACATTCAGGACTGTCTTGATGCAATCCATCCTGCTGATGTTGGACTTAAAGAGGAAAATCCAGATGATGATCGAGGGCTTGGTTTTTTCAGAGACAATCTAAATAGAGTTTCTCGATGGACTCAACCAATAACATACTTCAATTTATATGAAGGTGATAGTTTTACGATGTGTATATTCTGTTTTCCTACTTCCTCAGTCATTCCACTTCATGATCACCTTGGCATGACTGTTTTTAGCAAAGTTCTGTATGGTTCTTTGCATGTGAGAGCTTACGATTGGGTGGAGCCTTCCCACGAAAGCAAGGGATCAAATTACTTTCCAGGAGATGAGATGACTCGAATTTTCTGGAAATCAATCAAGGATAAGCTTATTCTCCCCTTTTTGGATTTGGACATTAAGTACTTTGACCTTGGTCTTCCTCACCGTGATACCACTGATGATAAAGTTACCGTTGAAAGTTCAGAGGCTACTCTTAAGCAGCAGCTGTGGTTGATAGTCTGGCCATCTTTTAGAAGTGAAGGTGCTGCTGCAGTGCTGTTGTTTTGGCTTACTCTTGATTGCTGCTTGGTTATAGATGATGGGTTTCATATTGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L27

Protein Analysis

377

Amino Acids

42.5

Weight (kDa)

7.63

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	71 - 183	8e-48	APO RNA-binding
PCO_ADO	PF07847	183 - 281	8.8e-32	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39800 AT5G40080
fragaria_vesca	FvH4_2g10720 FvH4_5g36580 FvH4_5g36580
malus_domestica	MD02G1257900.v1.1 MD08G1188400.v1.1
prunus_persica	Prupe.1G522900_v2.0.a1 Prupe.1G522900_v2.0.a1 Prupe.6G102500_v2.0.a1
pyrus_communis	pycom02g21900 pycom08g16210
rosa_chinensis	RchiOBHm_Chr3g0492081 RchiOBHm_Chr7g0242281
rosa_multiflora	Rmu_sc0021983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222810 Rroxscaffold_6G00392550
rosa_rugosa	Rorug03G0251800
rosa_samantha	Rh3AG301900 Rh3BG337800 Rh3CG335300 Rh3DG337400 Rh7BG439700 Rh7CG486500 Rh7DG454900
rosa_wichuraiana	Rw0G009490 Rw3G026650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	380, 485
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	2 cut(s)	86, 362
AclWI	GGATC	2 cut(s)	255, 847
AcoI	YGGCCR	2 cut(s)	526, 1034
AcsI	RAATTY	1 cut(s)	873
AfaI	GTAC	5 cut(s)	70, 163, 261, 423, 935
AfiI	CCNNNNNNNGG	4 cut(s)	244, 380, 485, 916
AflII	CTTAAG	1 cut(s)	1007
AgsI	TTSAA	5 cut(s)	82, 127, 497, 673, 989
AjnI	CCWGG	2 cut(s)	431, 853
AluBI	AGCT	7 cut(s)	145, 257, 440, 463, 803, 901, 1018
AluI	AGCT	7 cut(s)	145, 257, 440, 463, 803, 901, 1018
Alw26I	GTCTC	2 cut(s)	51, 618
AlwI	GGATC	2 cut(s)	255, 847
AlwNI	CAGNNNCTG	1 cut(s)	1018
AoxI	GGCC	4 cut(s)	11, 451, 526, 1034
ApeKI	GCWGC	6 cut(s)	317, 1012, 1015, 1058, 1061, 1095
ApoI	RAATTY	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	4 cut(s)	337, 698, 740, 947
AvaII	GGWCC	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	8
BalI	TGGCCA	2 cut(s)	528, 1036
BbsI	GAAGAC	1 cut(s)	941
BbvI	GCAGC	6 cut(s)	304, 1024, 1027, 1045, 1048, 1082
BccI	CCATC	6 cut(s)	182, 537, 567, 642, 1045, 1106
BciT130I	CCWGG	2 cut(s)	433, 855
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	51, 618
BfmI	CTRYAG	1 cut(s)	1062
BfrI	CTTAAG	1 cut(s)	1007
BisI	GCNGC	8 cut(s)	86, 318, 362, 1013, 1016, 1059, 1062, 1096
BlsI	GCNGC	8 cut(s)	87, 319, 363, 1014, 1017, 1060, 1063, 1097
BmcAI	AGTACT	2 cut(s)	423, 935
Bme1390I	CCNGG	2 cut(s)	433, 855
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	2 cut(s)	42, 819
BmrFI	CCNGG	2 cut(s)	433, 855
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	4 cut(s)	32, 217, 239, 541
BmuI	ACTGGG	1 cut(s)	192
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	941
Bpu10I	CCTNAGC	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	751, 943
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 380, 485, 916
Bse1I	ACTGG	2 cut(s)	198, 479
Bse21I	CCTNAGG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	433, 855
BseDI	CCNNGG	2 cut(s)	751, 943
BseGI	GGATG	2 cut(s)	23, 559
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	4 cut(s)	244, 380, 485, 916
BseMII	CTCAG	3 cut(s)	79, 495, 741
BseNI	ACTGG	2 cut(s)	198, 479
BseXI	GCAGC	6 cut(s)	304, 1024, 1027, 1045, 1048, 1082
BshFI	GGCC	4 cut(s)	13, 453, 528, 1036
BslI	CCNNNNNNNGG	4 cut(s)	244, 380, 485, 916
BsmAI	GTCTC	2 cut(s)	51, 618
BsmBI	CGTCTC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	4 cut(s)	13, 453, 528, 1036
Bsp143I	GATC	5 cut(s)	247, 397, 601, 745, 839
BspACI	CCGC	2 cut(s)	86, 362
BspANI	GGCC	4 cut(s)	13, 453, 528, 1036
BspCNI	CTCAG	3 cut(s)	78, 496, 740
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	2 cut(s)	42, 819
BspMAI	CTGCAG	1 cut(s)	1066
BspPI	GGATC	2 cut(s)	255, 847
BspTI	CTTAAG	1 cut(s)	1007
BsrBI	CCGCTC	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	198, 479
BssECI	CCNNGG	2 cut(s)	751, 943
BssMI	GATC	5 cut(s)	247, 397, 601, 745, 839
BssT1I	CCWWGG	2 cut(s)	751, 943
Bst2UI	CCWGG	2 cut(s)	433, 855
Bst4CI	ACNGT	5 cut(s)	45, 545, 763, 959, 985
BstAFI	CTTAAG	1 cut(s)	1007
BstC8I	GCNNGC	3 cut(s)	61, 315, 429
BstDEI	CTNAG	5 cut(s)	8, 65, 267, 504, 727
BstF5I	GGATG	2 cut(s)	23, 559
BstKTI	GATC	5 cut(s)	250, 400, 604, 748, 842
BstMAI	GTCTC	2 cut(s)	51, 618
BstMBI	GATC	5 cut(s)	247, 397, 601, 745, 839
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 437, 498
BstNI	CCWGG	2 cut(s)	433, 855
BstNSI	RCATGY	4 cut(s)	168, 431, 473, 797
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	2 cut(s)	431, 853
BstSFI	CTRYAG	1 cut(s)	1062
BstV1I	GCAGC	6 cut(s)	304, 1024, 1027, 1045, 1048, 1082
BstV2I	GAAGAC	1 cut(s)	941
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	4 cut(s)	13, 453, 528, 1036
BtsCI	GGATG	2 cut(s)	23, 559
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	3 cut(s)	205, 966, 1071
Cac8I	GCNNGC	3 cut(s)	61, 315, 429
CaiI	CAGNNNCTG	1 cut(s)	1018
CciI	TCATGA	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	5 cut(s)	69, 162, 260, 422, 934
CviAII	CATG	8 cut(s)	137, 165, 428, 470, 512, 743, 757, 794
CviQI	GTAC	5 cut(s)	69, 162, 260, 422, 934
DdeI	CTNAG	5 cut(s)	8, 65, 267, 504, 727
DpnI	GATC	5 cut(s)	249, 399, 603, 747, 841
DpnII	GATC	5 cut(s)	247, 397, 601, 745, 839
EaeI	YGGCCR	2 cut(s)	526, 1034
Eco130I	CCWWGG	2 cut(s)	751, 943
Eco147I	AGGCCT	2 cut(s)	13, 453
Eco47I	GGWCC	1 cut(s)	508
Eco81I	CCTNAGG	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	431, 853
EcoT14I	CCWWGG	2 cut(s)	751, 943
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	751, 943
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	8 cut(s)	140, 168, 431, 473, 515, 746, 760, 797
FatI	CATG	8 cut(s)	136, 164, 427, 469, 511, 742, 756, 793
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	8 cut(s)	86, 318, 362, 1013, 1016, 1059, 1062, 1096
FokI	GGATG	2 cut(s)	10, 546
Fsp4HI	GCNGC	8 cut(s)	86, 318, 362, 1013, 1016, 1059, 1062, 1096
GluI	GCNGC	8 cut(s)	86, 318, 362, 1013, 1016, 1059, 1062, 1096
HaeIII	GGCC	4 cut(s)	13, 453, 528, 1036
Hin1II	CATG	8 cut(s)	140, 168, 431, 473, 515, 746, 760, 797
HindIII	AAGCTT	3 cut(s)	143, 438, 899
HinfI	GANTC	2 cut(s)	652, 868
HphI	GGTGA	4 cut(s)	337, 698, 740, 947
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	4 cut(s)	51, 505, 623, 997
Hpy188III	TCNNGA	9 cut(s)	7, 217, 539, 548, 593, 645, 743, 880, 1088
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	677, 831, 1046
HpyCH4III	ACNGT	5 cut(s)	45, 545, 763, 959, 985
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 437, 498
HpyF3I	CTNAG	5 cut(s)	8, 65, 267, 504, 727
Hsp92II	CATG	8 cut(s)	140, 168, 431, 473, 515, 746, 760, 797
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	5 cut(s)	247, 397, 601, 745, 839
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	6 cut(s)	304, 1024, 1027, 1045, 1048, 1082
LweI	GCATC	4 cut(s)	32, 217, 239, 541
MaeIII	GTNAC	1 cut(s)	979
MalI	GATC	5 cut(s)	249, 399, 603, 747, 841
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	5 cut(s)	247, 397, 601, 745, 839
MboII	GAAGA	3 cut(s)	242, 316, 941
MflI	RGATCY	1 cut(s)	247
MlsI	TGGCCA	2 cut(s)	528, 1036
MluCI	AATT	6 cut(s)	92, 402, 673, 844, 873, 1128
MluNI	TGGCCA	2 cut(s)	528, 1036
MlyI	GAGTC	2 cut(s)	646, 862
MmeI	TCCRAC	2 cut(s)	41, 553
Mox20I	TGGCCA	2 cut(s)	528, 1036
Mph1103I	ATGCAT	1 cut(s)	232
MscI	TGGCCA	2 cut(s)	528, 1036
MseI	TTAA	6 cut(s)	299, 309, 447, 579, 930, 1008
Msp20I	TGGCCA	2 cut(s)	528, 1036
MspA1I	CMGCKG	3 cut(s)	257, 463, 1018
MspCI	CTTAAG	1 cut(s)	1007
MspR9I	CCNGG	2 cut(s)	433, 855
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	433, 855
MwoI	GCNNNNNNNGC	3 cut(s)	142, 437, 498
NdeII	GATC	5 cut(s)	247, 397, 601, 745, 839
NlaIII	CATG	8 cut(s)	140, 168, 431, 473, 515, 746, 760, 797
NlaIV	GGNNCC	2 cut(s)	42, 819
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	4 cut(s)	168, 431, 473, 797
PaeI	GCATGC	1 cut(s)	431
PagI	TCATGA	1 cut(s)	742
PceI	AGGCCT	2 cut(s)	13, 453
PctI	GAATGC	1 cut(s)	503
PflMI	CCANNNNNTGG	2 cut(s)	380, 485
PfoI	TCCNGGA	1 cut(s)	853
PkrI	GCNGC	8 cut(s)	87, 319, 363, 1014, 1017, 1060, 1063, 1097
PleI	GAGTC	2 cut(s)	646, 862
PpsI	GAGTC	2 cut(s)	646, 862
PshAI	GACNNNNGTC	1 cut(s)	945
Psp6I	CCWGG	2 cut(s)	431, 853
PspGI	CCWGG	2 cut(s)	431, 853
PspN4I	GGNNCC	2 cut(s)	42, 819
PspPI	GGNCC	1 cut(s)	508
PstI	CTGCAG	1 cut(s)	1066
PstNI	CAGNNNCTG	1 cut(s)	1018
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	3 cut(s)	257, 463, 1018
RsaI	GTAC	5 cut(s)	70, 163, 261, 423, 935
RsaNI	GTAC	5 cut(s)	69, 162, 260, 422, 934
SaqAI	TTAA	6 cut(s)	299, 309, 447, 579, 930, 1008
SatI	GCNGC	8 cut(s)	86, 318, 362, 1013, 1016, 1059, 1062, 1096
Sau3AI	GATC	5 cut(s)	247, 397, 601, 745, 839
Sau96I	GGNCC	1 cut(s)	508
ScaI	AGTACT	2 cut(s)	423, 935
SchI	GAGTC	2 cut(s)	646, 862
ScrFI	CCNGG	2 cut(s)	433, 855
SfaNI	GCATC	4 cut(s)	32, 217, 239, 541
SfcI	CTRYAG	1 cut(s)	1062
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	1007
SmoI	CTYRAG	1 cut(s)	1007
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	6 cut(s)	92, 402, 673, 844, 873, 1128
SseBI	AGGCCT	2 cut(s)	13, 453
SsiI	CCGC	2 cut(s)	86, 362
StuI	AGGCCT	2 cut(s)	13, 453
StyD4I	CCNGG	2 cut(s)	431, 853
StyI	CCWWGG	2 cut(s)	751, 943
TaaI	ACNGT	5 cut(s)	45, 545, 763, 959, 985
TaqI	TCGA	4 cut(s)	366, 604, 646, 871
TasI	AATT	6 cut(s)	92, 402, 673, 844, 873, 1128
TatI	WGTACW	4 cut(s)	161, 259, 421, 933
TauI	GCSGC	2 cut(s)	88, 364
Tru1I	TTAA	6 cut(s)	299, 309, 447, 579, 930, 1008
Tru9I	TTAA	6 cut(s)	299, 309, 447, 579, 930, 1008
TscAI	CASTG	3 cut(s)	205, 973, 1071
TseI	GCWGC	6 cut(s)	317, 1012, 1015, 1058, 1061, 1095
TspDTI	ATGAA	4 cut(s)	99, 696, 731, 1109
TspRI	CASTG	3 cut(s)	205, 973, 1071
Van91I	CCANNNNNTGG	2 cut(s)	380, 485
Vha464I	CTTAAG	1 cut(s)	1007
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	873
XceI	RCATGY	4 cut(s)	168, 431, 473, 797
ZrmI	AGTACT	2 cut(s)	423, 935
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.