Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021983.1

Orthogroup ID

OG0006293

Physical Location & Seq

Genomic Coordinates Forward (+)

1253 .. 1833

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgccactggggctaataatggggctaggaagggcatttcgtcgaaagcgaacggcatcccttgacattctttcccccaaacgagccccaaggaacttttacaaggggaagaactgcaaacccactggtttccacacccgaaaaggtggatatgttgtggtgcaggacaaactacccaactatgtagtccctgatttagctgacttcaagctcaaaccatatgtatctcagtgccccaaagaggtcaagactgcagagacagccgaatcaactaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L27

Protein Analysis

92

Amino Acids

10.33

Weight (kDa)

10.12

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39800 AT5G40080
fragaria_vesca	FvH4_2g10720 FvH4_5g36580 FvH4_5g36580
malus_domestica	MD02G1257900.v1.1 MD08G1188400.v1.1
prunus_persica	Prupe.1G522900_v2.0.a1 Prupe.1G522900_v2.0.a1 Prupe.6G102500_v2.0.a1
pyrus_communis	pycom02g21900 pycom08g16210
rosa_chinensis	RchiOBHm_Chr3g0492081 RchiOBHm_Chr7g0242281
rosa_multiflora	Rmu_sc0021983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222810 Rroxscaffold_6G00392550
rosa_rugosa	Rorug03G0251800
rosa_samantha	Rh3AG301900 Rh3BG337800 Rh3CG335300 Rh3DG337400 Rh7BG439700 Rh7CG486500 Rh7DG454900
rosa_wichuraiana	Rw0G009490 Rw3G026650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	2 cut(s)	200, 211
AluI	AGCT	2 cut(s)	200, 211
Alw26I	GTCTC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	10
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	12, 130
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	12, 130
BseSI	GKGCMC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	88, 236
BspCNI	CTCAG	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	12, 130
BssECI	CCNNGG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	56
BstMAI	GTCTC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 260
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	3 cut(s)	5, 123, 236
CviJI	RGCY	6 cut(s)	13, 25, 86, 200, 211, 263
CviKI_1	RGCY	6 cut(s)	13, 25, 86, 200, 211, 263
DdeI	CTNAG	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	89
FaiI	YATR	4 cut(s)	153, 183, 220, 222
FaqI	GGGAC	1 cut(s)	173
FauNDI	CATATG	1 cut(s)	220
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	26
HinfI	GANTC	1 cut(s)	266
Hpy188III	TCNNGA	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	117, 163, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 260
HpyF3I	CTNAG	1 cut(s)	228
LpnPI	CCDG	3 cut(s)	111, 149, 204
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	26
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	88, 236
MnlI	CCTC	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	10, 260
NdeI	CATATG	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	88, 236
SetI	ASST	4 cut(s)	148, 202, 213, 246
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	252
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	89
TaqI	TCGA	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	3 cut(s)	12, 130, 236
TspRI	CASTG	3 cut(s)	12, 130, 236
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.