FvH4_5g36580

39S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006293
Physical Location & Seq
Forward (+)
26824407 .. 26826792
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36580.t1

Sequence Viewer

Length: 279 bp
ATGCCACTCGGGCTAATAATGGGGTTAGGAAGGGCATTTCGACGAAAGCGAACGGCATCCCTTGACATTCTTTCTCCCAAACGAGCCCCAAGGAATTTTTACAAGGGGAAGAACTGCAAGCCCACTGGTTTCCACACCCGAAAAGGAGGATACGTTGTGGTGCAGGACAAACTACCCAACTATGTAGTCCCTGATTTAACTGACTTCAAGCTCAAACCATATGTATCTCAGTGCCCCAAAGAGGTCAAGGCTGCAGAGTCAGCCGGAGCAACTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-L27

Protein Analysis

93

Amino Acids

10.22

Weight (kDa)

10.22

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L27 PF09809 24 - 84 8.2e-18 Mitochondrial ribosomal protein L27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 69
BciVI GTATCC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 252
BfuI GTATCC 1 cut(s) 143
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 8
BmsI GCATC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 88, 236
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 256
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 10, 260
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 238
BsuI GTATCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 123, 236
Cac8I GCNNGC 1 cut(s) 119
CviJI RGCY 6 cut(s) 13, 86, 121, 211, 251, 263
CviKI_1 RGCY 6 cut(s) 13, 86, 121, 211, 251, 263
DdeI CTNAG 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 89
FaiI YATR 3 cut(s) 183, 220, 222
FaqI GGGAC 1 cut(s) 173
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
HapII CCGG 1 cut(s) 264
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 117, 163, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 260
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 153
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 3 cut(s) 111, 149, 204
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 65
MaeII ACGT 1 cut(s) 153
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 88, 236
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 2 cut(s) 140, 235
MseI TTAA 1 cut(s) 197
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 10, 260
NdeI CATATG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 252
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 2 cut(s) 88, 236
SetI ASST 3 cut(s) 156, 213, 246
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 94
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 94
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 2 cut(s) 130, 236
TseI GCWGC 1 cut(s) 251
TspRI CASTG 2 cut(s) 130, 236
XapI RAATTY 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.