AT5G40080

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006293
Physical Location & Seq
Reverse (-)
16039927 .. 16041714
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40080.1

Sequence Viewer

Length: 285 bp
ATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGAAGAAAGAGAGCTTCTTCTCTTGATATCCTCTCCCCAAAACGAGCTCCTAGAGACTTCTACAAGGGCAAAAACTGCAAACCTACTGGTTTCCACACGAGAAAAGGAGGATATGTTGTGCAGCCAGATAAGTTACCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAGCCATATGTATCTCAGTGCCCTCTACAAGTCAACACAAACGAGTCAACTGAAGCTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-L27

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

10.13

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L27 PF09809 26 - 80 1.2e-17 Mitochondrial ribosomal protein L27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 239
AluBI AGCT 4 cut(s) 59, 92, 217, 275
AluI AGCT 4 cut(s) 59, 92, 217, 275
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 94
BauI CACGAG 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 94, 242
Bsp143I GATC 2 cut(s) 38, 199
BspCNI CTCAG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 2 cut(s) 38, 199
BssSI CACGAG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 2 cut(s) 41, 202
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 38, 199
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 242
BstSNI TACGTA 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 206
CviJI RGCY 7 cut(s) 59, 92, 169, 210, 217, 223, 275
CviKI_1 RGCY 7 cut(s) 59, 92, 169, 210, 217, 223, 275
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 40, 201
DpnII GATC 2 cut(s) 38, 199
Ecl136II GAGCTC 1 cut(s) 92
Eco105I TACGTA 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 94
FaiI YATR 3 cut(s) 159, 226, 228
FaqI GGGAC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 167
HapII CCGG 1 cut(s) 207
HincII GTYRAC 2 cut(s) 253, 267
HindII GTYRAC 2 cut(s) 253, 267
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 253, 267
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 253, 267
Hpy99I CGWCG 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 123, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 189
Kzo9I GATC 2 cut(s) 38, 199
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 117, 183, 210, 220
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 177
MalI GATC 2 cut(s) 40, 201
MboI GATC 2 cut(s) 38, 199
MboII GAAGA 3 cut(s) 48, 54, 60
MhlI GDGCHC 2 cut(s) 94, 242
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 4 cut(s) 8, 86, 146, 252
MseI TTAA 2 cut(s) 23, 213
MspI CCGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 226
NdeII GATC 2 cut(s) 38, 199
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 94
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 23, 213
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 2 cut(s) 38, 199
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 2 cut(s) 94, 242
SetI ASST 6 cut(s) 61, 94, 130, 192, 219, 277
SnaBI TACGTA 1 cut(s) 190
Sse9I AATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 96
SstI GAGCTC 1 cut(s) 94
TaiI ACGT 1 cut(s) 192
TasI AATT 1 cut(s) 184
Tru1I TTAA 2 cut(s) 23, 213
Tru9I TTAA 2 cut(s) 23, 213
TscAI CASTG 1 cut(s) 242
TseI GCWGC 1 cut(s) 166
TspRI CASTG 1 cut(s) 242
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.