FvH4_2g10720

39S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006293
Physical Location & Seq
Forward (+)
9450306 .. 9452876
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10720.t1

Sequence Viewer

Length: 279 bp
ATGCCGCTTGGGCTAATAATGGGACTAGGAAGGGCATTTCGTCAAAAGCGAACGGCATCTCTTGACATTCTTTCCCCCAAACGAGCCCCAAGGAATTTTTACAAGGGCAAGAACTGCAAGCCCACTGGTTTCCACACCCGAAAAGGTGGATACGTTGTGGTGCAGGACAAACTACCCAACTATGTAGTCCCTGATTTAACTGACTTCAAGCTCAAACCATATGTATCTCAGTGCCCCAAAGAGGTTAAGACAGCAGAATCAGCCGGAGCAACTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-L27

Protein Analysis

93

Amino Acids

10.23

Weight (kDa)

10.12

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L27 PF09809 24 - 83 8.7e-18 Mitochondrial ribosomal protein L27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
ApoI RAATTY 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 69
BciVI GTATCC 1 cut(s) 143
BfaI CTAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 143
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmsI GCATC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 2 cut(s) 36, 173
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 2 cut(s) 36, 173
Bsp1286I GDGCHC 2 cut(s) 88, 236
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 228
BstMWI GCNNNNNNNGC 3 cut(s) 10, 114, 260
BstSLI GKGCMC 1 cut(s) 236
BsuI GTATCC 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 123, 236
Cac8I GCNNGC 1 cut(s) 119
CviJI RGCY 5 cut(s) 13, 86, 121, 211, 263
CviKI_1 RGCY 5 cut(s) 13, 86, 121, 211, 263
DdeI CTNAG 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 89
FaiI YATR 3 cut(s) 183, 220, 222
FaqI GGGAC 2 cut(s) 36, 173
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 264
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 117, 163
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 114, 260
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 153
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 3 cut(s) 111, 149, 204
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 88, 236
MluCI AATT 1 cut(s) 94
MnlI CCTC 1 cut(s) 235
MseI TTAA 2 cut(s) 197, 246
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 10, 114, 260
NdeI CATATG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 197, 246
SatI GCNGC 1 cut(s) 5
SduI GDGCHC 2 cut(s) 88, 236
SetI ASST 4 cut(s) 148, 156, 213, 246
SfaNI GCATC 1 cut(s) 65
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 1 cut(s) 156
TasI AATT 1 cut(s) 94
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 197, 246
Tru9I TTAA 2 cut(s) 197, 246
TscAI CASTG 2 cut(s) 130, 236
TspRI CASTG 2 cut(s) 130, 236
XapI RAATTY 1 cut(s) 94
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.