Rw0G009490

39S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00371
OG0006293
Physical Location & Seq
Forward (+)
102142 .. 104075
1934 bp
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UTR
Exon/CDS
Intron
Rw0G009490.1

Sequence Viewer

Length: 279 bp
ATGCCACTCGGGCTAATAATGGGGCTAGGAAGGGCATTTCGTCGAAAGCGAACGGCATCCCTTGACATTCTTTCCCCAAAACGAGCCCCAAGGAATTTTTACAAGGGGAAGAACTGCAAGCCCACTGGTTTCCACACCCGAAAAGGTGGATATGTTGTGGTGCAGGACAAACTACCCAACTATGTAGTCCCCGATTTAACTGACTTCAAGCTCAAACCATATGTATCTCAGTGCCCCGAAGAGGTCAAGACTGCAGAGTCAGCGGAATCAACTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-L27

Protein Analysis

92

Amino Acids

10.34

Weight (kDa)

9.96

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L27 PF09809 24 - 84 6.1e-18 Mitochondrial ribosomal protein L27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 256
AciI CCGC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 8
ApoI RAATTY 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 69
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 8
BmsI GCATC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 88, 236
BspACI CCGC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 256
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 10, 260
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 123, 236
Cac8I GCNNGC 1 cut(s) 119
CviJI RGCY 5 cut(s) 13, 25, 86, 121, 211
CviKI_1 RGCY 5 cut(s) 13, 25, 86, 121, 211
DdeI CTNAG 1 cut(s) 228
DrdI GACNNNNNNGTC 1 cut(s) 256
DseDI GACNNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 89
FaiI YATR 4 cut(s) 153, 183, 220, 222
FaqI GGGAC 1 cut(s) 173
FauNDI CATATG 1 cut(s) 220
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 88
FspBI CTAG 1 cut(s) 26
HinfI GANTC 2 cut(s) 257, 266
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 117, 163, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 260
HpyF3I CTNAG 1 cut(s) 228
LpnPI CCDG 2 cut(s) 111, 149
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 26
MboII GAAGA 2 cut(s) 121, 251
MhlI GDGCHC 2 cut(s) 88, 236
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 1 cut(s) 235
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 10, 260
NdeI CATATG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 1 cut(s) 266
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 197
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 2 cut(s) 88, 236
SetI ASST 3 cut(s) 148, 213, 246
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 89
TaqI TCGA 1 cut(s) 43
TasI AATT 1 cut(s) 94
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 2 cut(s) 130, 236
TspRI CASTG 2 cut(s) 130, 236
XapI RAATTY 1 cut(s) 94
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.