pycom08g16210

39S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006293
Physical Location & Seq
Reverse (-)
16082128 .. 16083148
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16210.1

Sequence Viewer

Length: 279 bp
ATGCCATTGGGACTAATATTAGGGTTAGGAAGGGCATTTCGTCGAAAGCGAACATCATCACTTGACATTCTTTCTTCCAAACGTGCCCCAAGGGATTACTACAAGGGGAAGAATTGCAAGCCGACTGGTTTCCACACCCGAAAAGCTAAGTATGTCGTGCAGCAGGAGAAATTACCTAACTATGTAGTCCCTGATTTAACTGCCTTCAAGCTCAAACCATATGTATCTCAGTGCCCCAGAGAGGTCAAGAATACTCAGTCTGCTGAACCAACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-L27

Protein Analysis

93

Amino Acids

10.51

Weight (kDa)

10.26

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L27 PF09809 24 - 85 1.1e-18 Mitochondrial ribosomal protein L27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 146, 211
AluI AGCT 2 cut(s) 146, 211
ApeKI GCWGC 1 cut(s) 160
BaeGI GKGCMC 2 cut(s) 88, 236
BbvI GCAGC 1 cut(s) 172
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 242, 269
BseNI ACTGG 1 cut(s) 130
BseSI GKGCMC 2 cut(s) 88, 236
BseXI GCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 24, 173
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 2 cut(s) 24, 173
Bsp1286I GDGCHC 2 cut(s) 88, 236
BspCNI CTCAG 2 cut(s) 241, 268
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 147, 228, 255
BstSLI GKGCMC 2 cut(s) 88, 236
BstV1I GCAGC 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 119
CviJI RGCY 3 cut(s) 121, 146, 211
CviKI_1 RGCY 3 cut(s) 121, 146, 211
DdeI CTNAG 3 cut(s) 147, 228, 255
Eco130I CCWWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaiI YATR 4 cut(s) 153, 183, 220, 222
FaqI GGGAC 2 cut(s) 24, 173
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 24, 214
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 117, 160
HpyF3I CTNAG 3 cut(s) 147, 228, 255
HpySE526I ACGT 1 cut(s) 82
LpnPI CCDG 4 cut(s) 111, 149, 204, 250
Lsp1109I GCAGC 1 cut(s) 172
MaeII ACGT 1 cut(s) 82
MboII GAAGA 2 cut(s) 66, 121
MhlI GDGCHC 2 cut(s) 88, 236
MluCI AATT 2 cut(s) 112, 170
MnlI CCTC 1 cut(s) 235
MseI TTAA 1 cut(s) 197
NdeI CATATG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PkrI GCNGC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 161
SduI GDGCHC 2 cut(s) 88, 236
SetI ASST 5 cut(s) 85, 148, 178, 213, 246
Sse9I AATT 2 cut(s) 112, 170
SspI AATATT 1 cut(s) 18
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 112, 170
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 236
TseI GCWGC 1 cut(s) 160
TspRI CASTG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.