AT5G41460

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
16589390 .. 16592381
2992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41460.1

Sequence Viewer

Length: 1575 bp
ATGAAGCTGAATAACCAGAAAGATCCAGCAGAGAAGCTAATGTGGGAACGGACTTTATCCGGATCCGGTTCACCGACCCGACCCGTATCCAAACTTATGGTAACGCTCCTCCTCCTCGTCTCCGCCACTTACGTTGTCTACACACTAAAGCTTATCTCAAACTCACGTGCTTGTCAAGTGGAGCCATTCTCCGCCGTTGTTCGTCGTCTCAACGACATTGTCAACTCATCTCAACCGTTGATTCTCTTCCACACAAATCAAACGGCTGTAATCAAATCATACGCCTCTCCACCACCTTCACCACCACCACCACCTCCGCCACCGCAAACCGGTTTCCAACACGTGGTTTTCGGTATCGCCGCGTCGGCAAGACTATGGAAACAGAGAAAAGAGTACATCAAGATTTGGTACAAACCAAACCAAATGCGTAGTTATGTCTGGTTAGAAAAACCAGTTACTGAAGAAGACGAAGAAGACGAAATTAGCCTCCCGCCGGTGAAAATCTCCGGCGATACATCGAAGTTTCCGTATAAAAACAAACAAGGACACAGATCGGCGATTAGAATTTCAAGAATCGTTACGGAGACACTTAAATTAGGACTCAAAGATGTGAGATGGTTCGTTATGGGAGACGATGATACAGTCTTTGTCGCCGAGAATCTAATCAGAGTTTTGAGAAAATACGATCATAATCAAATGTATTACATCGGCAGTTTATCGGAGAGTCATCTTCAGAACATTTATTTCTCTTATGGAATGGCTTATGGCGGTGGAGGATTTGCTATAAGTTATCCATTAGCGGTGGCTTTGAGCAAAATGCAAGATCGGTGTATTAAAAGGTATCCGGCGTTGTACGGTTCCGATGATCGGATGCAAGCTTGCATGGCTGAACTCGGTGTTCCACTCACTAAAGAACTCGGTTTTCACCAGTACGATGTGTATGGCAATCTCTTTGGATTACTAGCGGCTCACCCGGTGGCTCCACTGGTTACGCTTCATCACCTCGACGTGGTCGAACCGATTTTCCCAAACATGACACGTGTTGATGCCTTGAAGCATCTACAAGTCCCGGCAAAGCTAGACTCTGCTGGACTTATGCAACAGTCGATATGCTATGACAAACGCCGCAAATGGACTGTTTCCGTCTCTTGGGGATTCGCGGTTCAGATTTTCCGCGGAATCTTTTCGGCTCGAGAGATTGAAATGCCGTCGAGAACTTTCTTAAATTGGTATCGACGGGCGGATTACACGGCATACGCTTTCAACACCCGACCCGTGAGTCGTCATCCGTGCCAGAAACCGTTTGTGTTCTATATGACATCAACCAGAGTTCATCGGGTGACAAATATGACAGTGAGCCGTTATGAAATCCACCGCGTGGCTCATCCCGAGTGTCGGTGGAAGATGGCTAATCCCAGCGACATTAAGACAGTCATTGTTTACAAGAAACCGGACCCTCATCTTTGGGACAGGTCTCCTAGAAGAAATTGTTGTAGGGTGAAATCAAAGAAGAACAATACTTTGGAGATTAGTGTTGCAGTTTGCAAAGAAGGTGAAGTGGTTGAAGTCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

524

Amino Acids

60.01

Weight (kDa)

9.56

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 112 - 310 1.8e-15 Fringe-like
DUF604 PF04646 245 - 498 2.7e-117 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1278
AccB7I CCANNNNNTGG 2 cut(s) 343, 1378
AccI GTMKAC 1 cut(s) 138
AccII CGCG 4 cut(s) 362, 1160, 1176, 1377
AccIII TCCGGA 1 cut(s) 59
AclWI GGATC 3 cut(s) 17, 57, 70
AcsI RAATTY 1 cut(s) 564
AcuI CTGAAG 2 cut(s) 480, 716
AcvI CACGTG 3 cut(s) 167, 343, 1040
AdeI CACNNNGTG 2 cut(s) 976, 1378
AfaI GTAC 4 cut(s) 395, 410, 854, 932
AfiI CCNNNNNNNGG 8 cut(s) 329, 343, 493, 867, 1009, 1149, 1378, 1395
AflIII ACRYGT 3 cut(s) 340, 1037, 1039
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 5 cut(s) 570, 1054, 1202, 1264, 1565
AjiI CACGTC 1 cut(s) 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 1505, 1537
AloI GAACNNNNNNTCC 4 cut(s) 1008, 1040, 1146, 1178
AluBI AGCT 5 cut(s) 7, 37, 151, 878, 1078
AluI AGCT 5 cut(s) 7, 37, 151, 878, 1078
Alw26I GTCTC 6 cut(s) 124, 212, 578, 624, 1150, 1479
AlwI GGATC 3 cut(s) 17, 57, 70
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 2 cut(s) 1191, 1388
Aor13HI TCCGGA 1 cut(s) 59
ApoI RAATTY 1 cut(s) 564
AsiGI ACCGGT 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 1183
AspS9I GGNCC 1 cut(s) 1453
AsuC2I CCSGG 2 cut(s) 974, 1070
AsuHPI GGTGA 9 cut(s) 63, 291, 508, 917, 962, 992, 1351, 1510, 1565
AvaI CYCGRG 2 cut(s) 1191, 1388
AvaII GGWCC 1 cut(s) 1453
BamHI GGATCC 1 cut(s) 62
BbrPI CACGTG 3 cut(s) 167, 343, 1040
BbsI GAAGAC 2 cut(s) 471, 480
BccI CCATC 2 cut(s) 609, 1399
BceAI ACGGC 5 cut(s) 179, 279, 1192, 1266, 1344
BciVI GTATCC 2 cut(s) 97, 852
BcnI CCSGG 2 cut(s) 974, 1070
BcoDI GTCTC 6 cut(s) 124, 212, 578, 624, 1150, 1479
BfaI CTAG 3 cut(s) 962, 1079, 1479
BfuI GTATCC 2 cut(s) 97, 852
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 3 cut(s) 360, 966, 1126
BlsI GCNGC 3 cut(s) 361, 967, 1127
Bme1390I CCNGG 2 cut(s) 974, 1070
Bme18I GGWCC 1 cut(s) 1453
BmeT110I CYCGRG 2 cut(s) 1191, 1388
BmgBI CACGTC 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 1453
BmiI GGNNCC 5 cut(s) 64, 183, 859, 981, 1455
BmrFI CCNGG 2 cut(s) 974, 1070
BmsI GCATC 3 cut(s) 861, 1036, 1066
BpiI GAAGAC 2 cut(s) 471, 480
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuMI CCSGG 2 cut(s) 974, 1070
BsaAI YACGTR 3 cut(s) 167, 343, 1040
BsaBI GATNNNNATC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 1479
BsaJI CCNNGG 1 cut(s) 1174
BsaWI WCCGGW 4 cut(s) 59, 65, 329, 1450
Bsc4I CCNNNNNNNGG 8 cut(s) 329, 343, 493, 867, 1009, 1149, 1378, 1395
Bse118I RCCGGY 2 cut(s) 329, 493
Bse1I ACTGG 3 cut(s) 452, 928, 990
Bse8I GATNNNNATC 1 cut(s) 690
BseAI TCCGGA 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 1174
BseGI GGATG 3 cut(s) 876, 1285, 1384
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 8 cut(s) 329, 343, 493, 867, 1009, 1149, 1378, 1395
BseNI ACTGG 3 cut(s) 452, 928, 990
BseRI GAGGAG 3 cut(s) 98, 101, 104
BseYI CCCAGC 1 cut(s) 1415
Bsh1236I CGCG 4 cut(s) 362, 1160, 1176, 1377
BshTI ACCGGT 1 cut(s) 329
BsiHKCI CYCGRG 2 cut(s) 1191, 1388
BsiSI CCGG 9 cut(s) 60, 66, 330, 494, 507, 845, 974, 1070, 1451
BslFI GGGAC 2 cut(s) 1052, 1481
BslI CCNNNNNNNGG 8 cut(s) 329, 343, 493, 867, 1009, 1149, 1378, 1395
BsmAI GTCTC 6 cut(s) 124, 212, 578, 624, 1150, 1479
BsmBI CGTCTC 4 cut(s) 124, 212, 624, 1150
BsmFI GGGAC 2 cut(s) 1052, 1481
Bso31I GGTCTC 1 cut(s) 1479
BsoBI CYCGRG 2 cut(s) 1191, 1388
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 6 cut(s) 22, 62, 551, 685, 823, 865
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 4 cut(s) 362, 1160, 1176, 1377
BspLI GGNNCC 5 cut(s) 64, 183, 859, 981, 1455
BspPI GGATC 3 cut(s) 17, 57, 70
BspTNI GGTCTC 1 cut(s) 1479
BsrFI RCCGGY 2 cut(s) 329, 493
BsrI ACTGG 3 cut(s) 452, 928, 990
BssAI RCCGGY 2 cut(s) 329, 493
BssECI CCNNGG 1 cut(s) 1174
BssMI GATC 6 cut(s) 22, 62, 551, 685, 823, 865
Bst4CI ACNGT 8 cut(s) 237, 643, 857, 1104, 1138, 1302, 1354, 1432
Bst6I CTCTTC 1 cut(s) 251
BstBAI YACGTR 3 cut(s) 167, 343, 1040
BstC8I GCNNGC 2 cut(s) 876, 880
BstDSI CCRYGG 1 cut(s) 1174
BstF5I GGATG 3 cut(s) 876, 1285, 1384
BstFNI CGCG 4 cut(s) 362, 1160, 1176, 1377
BstKTI GATC 6 cut(s) 25, 65, 554, 688, 826, 868
BstMAI GTCTC 6 cut(s) 124, 212, 578, 624, 1150, 1479
BstMBI GATC 6 cut(s) 22, 62, 551, 685, 823, 865
BstMWI GCNNNNNNNGC 2 cut(s) 365, 884
BstSCI CCNGG 2 cut(s) 972, 1068
BstUI CGCG 4 cut(s) 362, 1160, 1176, 1377
BstV2I GAAGAC 2 cut(s) 471, 480
BstX2I RGATCY 2 cut(s) 22, 62
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 2 cut(s) 22, 62
BsuI GTATCC 2 cut(s) 97, 852
BtgI CCRYGG 1 cut(s) 1174
BtrI CACGTC 1 cut(s) 1009
BtsCI GGATG 3 cut(s) 876, 1285, 1384
BtsIMutI CAGTG 2 cut(s) 983, 1359
Cac8I GCNNGC 2 cut(s) 876, 880
CaiI CAGNNNCTG 1 cut(s) 458
Cfr10I RCCGGY 2 cut(s) 329, 493
Cfr13I GGNCC 1 cut(s) 1453
Cfr42I CCGCGG 1 cut(s) 1177
CseI GACGC 1 cut(s) 351
Csp6I GTAC 4 cut(s) 394, 409, 853, 931
CspAI ACCGGT 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 2 cut(s) 883, 1033
CviQI GTAC 4 cut(s) 394, 409, 853, 931
DpnI GATC 6 cut(s) 24, 64, 553, 687, 825, 867
DpnII GATC 6 cut(s) 22, 62, 551, 685, 823, 865
DraIII CACNNNGTG 2 cut(s) 976, 1378
DrdI GACNNNNNNGTC 1 cut(s) 1278
DseDI GACNNNNNNGTC 1 cut(s) 1278
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 4 cut(s) 112, 181, 306, 1256
Eco31I GGTCTC 1 cut(s) 1479
Eco47I GGWCC 1 cut(s) 1453
Eco57I CTGAAG 2 cut(s) 480, 716
Eco72I CACGTG 3 cut(s) 167, 343, 1040
Eco88I CYCGRG 2 cut(s) 1191, 1388
Esp3I CGTCTC 4 cut(s) 124, 212, 624, 1150
FaeI CATG 2 cut(s) 886, 1036
FaqI GGGAC 2 cut(s) 1052, 1481
FatI CATG 2 cut(s) 882, 1032
FauI CCCGC 1 cut(s) 498
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 360, 966, 1126
FokI GGATG 3 cut(s) 883, 1272, 1371
Fsp4HI GCNGC 3 cut(s) 360, 966, 1126
FspBI CTAG 3 cut(s) 962, 1079, 1479
GluI GCNGC 3 cut(s) 360, 966, 1126
GsaI CCCAGC 1 cut(s) 1419
HapII CCGG 9 cut(s) 60, 66, 330, 494, 507, 845, 974, 1070, 1451
HgaI GACGC 1 cut(s) 351
Hin1II CATG 2 cut(s) 886, 1036
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 2 cut(s) 149, 876
HinfI GANTC 9 cut(s) 241, 573, 600, 658, 724, 1082, 1155, 1179, 1279
HpaII CCGG 9 cut(s) 60, 66, 330, 494, 507, 845, 974, 1070, 1451
HphI GGTGA 9 cut(s) 63, 291, 508, 917, 962, 992, 1351, 1510, 1565
Hpy166II GTNNAC 4 cut(s) 71, 139, 223, 1441
Hpy188I TCNGA 6 cut(s) 668, 721, 735, 862, 870, 1167
Hpy188III TCNNGA 6 cut(s) 60, 400, 570, 1193, 1212, 1388
Hpy8I GTNNAC 4 cut(s) 71, 139, 223, 1441
Hpy99I CGWCG 5 cut(s) 207, 367, 1010, 1213, 1239
HpyAV CCTTC 2 cut(s) 306, 1544
HpyCH4III ACNGT 8 cut(s) 237, 643, 857, 1104, 1138, 1302, 1354, 1432
HpyCH4IV ACGT 5 cut(s) 132, 166, 342, 1008, 1039
HpyCH4V TGCA 6 cut(s) 820, 874, 882, 1099, 1538, 1545
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 884
HpySE526I ACGT 5 cut(s) 132, 166, 342, 1008, 1039
Hsp92II CATG 2 cut(s) 886, 1036
Kpn2I TCCGGA 1 cut(s) 59
KspI CCGCGG 1 cut(s) 1177
Kzo9I GATC 6 cut(s) 22, 62, 551, 685, 823, 865
LmnI GCTCC 3 cut(s) 111, 181, 985
LweI GCATC 3 cut(s) 861, 1036, 1066
MaeI CTAG 3 cut(s) 962, 1079, 1479
MaeII ACGT 5 cut(s) 132, 166, 342, 1008, 1039
MaeIII GTNAC 5 cut(s) 100, 454, 577, 988, 1339
MalI GATC 6 cut(s) 24, 64, 553, 687, 825, 867
MboI GATC 6 cut(s) 22, 62, 551, 685, 823, 865
MboII GAAGA 9 cut(s) 238, 473, 476, 482, 485, 722, 1414, 1494, 1522
MflI RGATCY 2 cut(s) 22, 62
MluCI AATT 5 cut(s) 480, 564, 593, 1225, 1486
MlyI GAGTC 4 cut(s) 594, 733, 1076, 1288
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 9 cut(s) 119, 122, 125, 295, 324, 497, 767, 1013, 1467
MroI TCCGGA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 1183
MseI TTAA 4 cut(s) 591, 834, 1223, 1425
MspA1I CMGCKG 1 cut(s) 1176
MspI CCGG 9 cut(s) 60, 66, 330, 494, 507, 845, 974, 1070, 1451
MspR9I CCNGG 2 cut(s) 974, 1070
MvnI CGCG 4 cut(s) 362, 1160, 1176, 1377
MwoI GCNNNNNNNGC 2 cut(s) 365, 884
NciI CCSGG 2 cut(s) 974, 1070
NdeII GATC 6 cut(s) 22, 62, 551, 685, 823, 865
NlaIII CATG 2 cut(s) 886, 1036
NlaIV GGNNCC 5 cut(s) 64, 183, 859, 981, 1455
NmeAIII GCCGAG 1 cut(s) 679
NmuCI GTSAC 1 cut(s) 1339
PaeR7I CTCGAG 1 cut(s) 1191
PcsI WCGNNNNNNNCGW 3 cut(s) 474, 524, 1011
PdmI GAANNNNTTC 1 cut(s) 1183
PfeI GAWTC 5 cut(s) 241, 573, 658, 1155, 1179
PflFI GACNNNGTC 2 cut(s) 218, 1010
PflMI CCANNNNNTGG 2 cut(s) 343, 1378
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 3 cut(s) 361, 967, 1127
PleI GAGTC 4 cut(s) 594, 732, 1076, 1287
PmaCI CACGTG 3 cut(s) 167, 343, 1040
PmlI CACGTG 3 cut(s) 167, 343, 1040
PpsI GAGTC 4 cut(s) 594, 732, 1076, 1287
Ppu21I YACGTR 3 cut(s) 167, 343, 1040
PspCI CACGTG 3 cut(s) 167, 343, 1040
PspFI CCCAGC 1 cut(s) 1415
PspN4I GGNNCC 5 cut(s) 64, 183, 859, 981, 1455
PspPI GGNCC 1 cut(s) 1453
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 22, 62
PsyI GACNNNGTC 2 cut(s) 218, 1010
RsaI GTAC 4 cut(s) 395, 410, 854, 932
RsaNI GTAC 4 cut(s) 394, 409, 853, 931
SacII CCGCGG 1 cut(s) 1177
SaqAI TTAA 4 cut(s) 591, 834, 1223, 1425
SatI GCNGC 3 cut(s) 360, 966, 1126
Sau3AI GATC 6 cut(s) 22, 62, 551, 685, 823, 865
Sau96I GGNCC 1 cut(s) 1453
SchI GAGTC 4 cut(s) 594, 733, 1076, 1288
ScrFI CCNGG 2 cut(s) 974, 1070
SfaNI GCATC 3 cut(s) 861, 1036, 1066
Sfr274I CTCGAG 1 cut(s) 1191
Sfr303I CCGCGG 1 cut(s) 1177
SgrAI CRCCGGYG 1 cut(s) 493
SgrBI CCGCGG 1 cut(s) 1177
SinI GGWCC 1 cut(s) 1453
SlaI CTCGAG 1 cut(s) 1191
SmlI CTYRAG 1 cut(s) 1191
SmoI CTYRAG 1 cut(s) 1191
Sse9I AATT 5 cut(s) 480, 564, 593, 1225, 1486
SspMI CTAG 3 cut(s) 962, 1079, 1479
StyD4I CCNGG 2 cut(s) 972, 1068
TaaI ACNGT 8 cut(s) 237, 643, 857, 1104, 1138, 1302, 1354, 1432
TaiI ACGT 5 cut(s) 135, 169, 345, 1011, 1042
TaqI TCGA 7 cut(s) 518, 1005, 1014, 1106, 1192, 1211, 1234
TasI AATT 5 cut(s) 480, 564, 593, 1225, 1486
TatI WGTACW 1 cut(s) 393
TauI GCSGC 3 cut(s) 362, 968, 1128
TfiI GAWTC 5 cut(s) 241, 573, 658, 1155, 1179
Tru1I TTAA 4 cut(s) 591, 834, 1223, 1425
Tru9I TTAA 4 cut(s) 591, 834, 1223, 1425
TscAI CASTG 2 cut(s) 990, 1359
TseFI GTSAC 1 cut(s) 1339
Tsp45I GTSAC 1 cut(s) 1339
TspDTI ATGAA 4 cut(s) 17, 986, 1322, 1380
TspGWI ACGGA 5 cut(s) 64, 516, 596, 1132, 1278
TspRI CASTG 2 cut(s) 990, 1359
Tth111I GACNNNGTC 2 cut(s) 218, 1010
Van91I CCANNNNNTGG 2 cut(s) 343, 1378
VpaK11BI GGWCC 1 cut(s) 1453
XapI RAATTY 1 cut(s) 564
XhoI CTCGAG 1 cut(s) 1191
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 1183
XspI CTAG 3 cut(s) 962, 1079, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.